Search results for the GEO ID: GSE41307  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM1014374 | GPL1261 |
|
Shn2_Mutant_1
|
Shn2_mutant
|
strain background: (BALB/c x C57BL/6J) F1 obtained by breeding heterozygote mice(+/-) with a C57BL/6J and BALB/cA background
genotype/variation: Shn2 deficient
age: adult
gender: male
tissue: hippocampus
|
|
| Sample_geo_accession | GSM1014374
| | Sample_status | Public on Aug 13 2013
| | Sample_submission_date | Oct 03 2012
| | Sample_last_update_date | Aug 14 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 100ng total RNA
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Mouse Genome 430 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using Affymetrix GeneChip Scanner 3000 (GCS3000)
| | Sample_data_processing | The data were analyzed with Affymetrix Expression Cosole (v.1.1). The normalization used in RMA is quantile normalization.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Juzoh,,Umemori
| | Sample_contact_email | jumemori@fujita-hu.ac.jp
| | Sample_contact_institute | Fujita Health University
| | Sample_contact_address | 1-98 Kutsukakecho, Dengakugakubo
| | Sample_contact_city | Toyoake
| | Sample_contact_zip/postal_code | 470-1192
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1014nnn/GSM1014374/suppl/GSM1014374_Shn2_KO1.CEL.gz
| | Sample_series_id | GSE41307
| | Sample_data_row_count | 45101
| | |
|
GSM1014375 | GPL1261 |
|
Shn2_Mutant_2
|
Shn2_mutant
|
strain background: (BALB/c x C57BL/6J) F1 obtained by breeding heterozygote mice(+/-) with a C57BL/6J and BALB/cA background
genotype/variation: Shn2 deficient
age: adult
gender: male
tissue: hippocampus
|
|
| Sample_geo_accession | GSM1014375
| | Sample_status | Public on Aug 13 2013
| | Sample_submission_date | Oct 03 2012
| | Sample_last_update_date | Aug 14 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 100ng total RNA
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Mouse Genome 430 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using Affymetrix GeneChip Scanner 3000 (GCS3000)
| | Sample_data_processing | The data were analyzed with Affymetrix Expression Cosole (v.1.1). The normalization used in RMA is quantile normalization.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Juzoh,,Umemori
| | Sample_contact_email | jumemori@fujita-hu.ac.jp
| | Sample_contact_institute | Fujita Health University
| | Sample_contact_address | 1-98 Kutsukakecho, Dengakugakubo
| | Sample_contact_city | Toyoake
| | Sample_contact_zip/postal_code | 470-1192
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1014nnn/GSM1014375/suppl/GSM1014375_Shn2_KO2.CEL.gz
| | Sample_series_id | GSE41307
| | Sample_data_row_count | 45101
| | |
|
GSM1014376 | GPL1261 |
|
Shn2_Mutant_3
|
Shn2_mutant
|
strain background: (BALB/c x C57BL/6J) F1 obtained by breeding heterozygote mice(+/-) with a C57BL/6J and BALB/cA background
genotype/variation: Shn2 deficient
age: adult
gender: male
tissue: hippocampus
|
|
| Sample_geo_accession | GSM1014376
| | Sample_status | Public on Aug 13 2013
| | Sample_submission_date | Oct 03 2012
| | Sample_last_update_date | Aug 14 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 100ng total RNA
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Mouse Genome 430 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using Affymetrix GeneChip Scanner 3000 (GCS3000)
| | Sample_data_processing | The data were analyzed with Affymetrix Expression Cosole (v.1.1). The normalization used in RMA is quantile normalization.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Juzoh,,Umemori
| | Sample_contact_email | jumemori@fujita-hu.ac.jp
| | Sample_contact_institute | Fujita Health University
| | Sample_contact_address | 1-98 Kutsukakecho, Dengakugakubo
| | Sample_contact_city | Toyoake
| | Sample_contact_zip/postal_code | 470-1192
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1014nnn/GSM1014376/suppl/GSM1014376_Shn2_KO3.CEL.gz
| | Sample_series_id | GSE41307
| | Sample_data_row_count | 45101
| | |
|
GSM1014377 | GPL1261 |
|
Shn2_Mutant_4
|
Shn2_mutant
|
strain background: (BALB/c x C57BL/6J) F1 obtained by breeding heterozygote mice(+/-) with a C57BL/6J and BALB/cA background
genotype/variation: Shn2 deficient
age: adult
gender: male
tissue: hippocampus
|
|
| Sample_geo_accession | GSM1014377
| | Sample_status | Public on Aug 13 2013
| | Sample_submission_date | Oct 03 2012
| | Sample_last_update_date | Aug 14 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 100ng total RNA
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Mouse Genome 430 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using Affymetrix GeneChip Scanner 3000 (GCS3000)
| | Sample_data_processing | The data were analyzed with Affymetrix Expression Cosole (v.1.1). The normalization used in RMA is quantile normalization.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Juzoh,,Umemori
| | Sample_contact_email | jumemori@fujita-hu.ac.jp
| | Sample_contact_institute | Fujita Health University
| | Sample_contact_address | 1-98 Kutsukakecho, Dengakugakubo
| | Sample_contact_city | Toyoake
| | Sample_contact_zip/postal_code | 470-1192
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1014nnn/GSM1014377/suppl/GSM1014377_Shn2_KO4.CEL.gz
| | Sample_series_id | GSE41307
| | Sample_data_row_count | 45101
| | |
|
GSM1014378 | GPL1261 |
|
Shn2_Wildtype_1
|
Shn2_wild type
|
strain background: (BALB/c x C57BL/6J) F1 obtained by breeding heterozygote mice(+/-) with a C57BL/6J and BALB/cA background
genotype/variation: wild type
age: adult
gender: male
tissue: hippocampus
|
|
| Sample_geo_accession | GSM1014378
| | Sample_status | Public on Aug 13 2013
| | Sample_submission_date | Oct 03 2012
| | Sample_last_update_date | Aug 14 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 100ng total RNA
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Mouse Genome 430 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using Affymetrix GeneChip Scanner 3000 (GCS3000)
| | Sample_data_processing | The data were analyzed with Affymetrix Expression Cosole (v.1.1). The normalization used in RMA is quantile normalization.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Juzoh,,Umemori
| | Sample_contact_email | jumemori@fujita-hu.ac.jp
| | Sample_contact_institute | Fujita Health University
| | Sample_contact_address | 1-98 Kutsukakecho, Dengakugakubo
| | Sample_contact_city | Toyoake
| | Sample_contact_zip/postal_code | 470-1192
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1014nnn/GSM1014378/suppl/GSM1014378_Shn2_WT1.CEL.gz
| | Sample_series_id | GSE41307
| | Sample_data_row_count | 45101
| | |
|
GSM1014379 | GPL1261 |
|
Shn2_Wildtype_2
|
Shn2_wild type
|
strain background: (BALB/c x C57BL/6J) F1 obtained by breeding heterozygote mice(+/-) with a C57BL/6J and BALB/cA background
genotype/variation: wild type
age: adult
gender: male
tissue: hippocampus
|
|
| Sample_geo_accession | GSM1014379
| | Sample_status | Public on Aug 13 2013
| | Sample_submission_date | Oct 03 2012
| | Sample_last_update_date | Aug 14 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 100ng total RNA
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Mouse Genome 430 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using Affymetrix GeneChip Scanner 3000 (GCS3000)
| | Sample_data_processing | The data were analyzed with Affymetrix Expression Cosole (v.1.1). The normalization used in RMA is quantile normalization.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Juzoh,,Umemori
| | Sample_contact_email | jumemori@fujita-hu.ac.jp
| | Sample_contact_institute | Fujita Health University
| | Sample_contact_address | 1-98 Kutsukakecho, Dengakugakubo
| | Sample_contact_city | Toyoake
| | Sample_contact_zip/postal_code | 470-1192
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1014nnn/GSM1014379/suppl/GSM1014379_Shn2_WT2.CEL.gz
| | Sample_series_id | GSE41307
| | Sample_data_row_count | 45101
| | |
|
GSM1014380 | GPL1261 |
|
Shn2_Wildtype_3
|
Shn2_wild type
|
strain background: (BALB/c x C57BL/6J) F1 obtained by breeding heterozygote mice(+/-) with a C57BL/6J and BALB/cA background
genotype/variation: wild type
age: adult
gender: male
tissue: hippocampus
|
|
| Sample_geo_accession | GSM1014380
| | Sample_status | Public on Aug 13 2013
| | Sample_submission_date | Oct 03 2012
| | Sample_last_update_date | Aug 14 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 100ng total RNA
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Mouse Genome 430 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using Affymetrix GeneChip Scanner 3000 (GCS3000)
| | Sample_data_processing | The data were analyzed with Affymetrix Expression Cosole (v.1.1). The normalization used in RMA is quantile normalization.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Juzoh,,Umemori
| | Sample_contact_email | jumemori@fujita-hu.ac.jp
| | Sample_contact_institute | Fujita Health University
| | Sample_contact_address | 1-98 Kutsukakecho, Dengakugakubo
| | Sample_contact_city | Toyoake
| | Sample_contact_zip/postal_code | 470-1192
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1014nnn/GSM1014380/suppl/GSM1014380_Shn2_WT3.CEL.gz
| | Sample_series_id | GSE41307
| | Sample_data_row_count | 45101
| | |
|
GSM1014381 | GPL1261 |
|
Shn2_Wildtype_4
|
Shn2_wild type
|
strain background: (BALB/c x C57BL/6J) F1 obtained by breeding heterozygote mice(+/-) with a C57BL/6J and BALB/cA background
genotype/variation: wild type
age: adult
gender: male
tissue: hippocampus
|
|
| Sample_geo_accession | GSM1014381
| | Sample_status | Public on Aug 13 2013
| | Sample_submission_date | Oct 03 2012
| | Sample_last_update_date | Aug 14 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 100ng total RNA
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Mouse Genome 430 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using Affymetrix GeneChip Scanner 3000 (GCS3000)
| | Sample_data_processing | The data were analyzed with Affymetrix Expression Cosole (v.1.1). The normalization used in RMA is quantile normalization.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Juzoh,,Umemori
| | Sample_contact_email | jumemori@fujita-hu.ac.jp
| | Sample_contact_institute | Fujita Health University
| | Sample_contact_address | 1-98 Kutsukakecho, Dengakugakubo
| | Sample_contact_city | Toyoake
| | Sample_contact_zip/postal_code | 470-1192
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1014nnn/GSM1014381/suppl/GSM1014381_Shn2_WT4.CEL.gz
| | Sample_series_id | GSE41307
| | Sample_data_row_count | 45101
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