Search results for the GEO ID: GSE41414  |
(Click on the check boxes provided under "Select for analysis", to initiate grouping) |
(Once the selection is made, click on "Add groups" in "Make groups for comparison", to make a group. Scroll down) |
|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM1016766 | GPL201 |
|
control_1
|
deltoid
|
Sex: male
tissue: deltoid
disease status: control
|
Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
|
| Sample_geo_accession | GSM1016766
| | Sample_status | Public on Feb 28 2013
| | Sample_submission_date | Oct 09 2012
| | Sample_last_update_date | Feb 28 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions. Tot RNA was further purified using the RNAeasy mini purification kit (QIAGEN) according to the RNA cleanup protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at 45C on HG 133A Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with oneChannelGui using rma as probeset summarization algoritm
| | Sample_platform_id | GPL201
| | Sample_contact_name | camilla,,bernardini
| | Sample_contact_email | camilla.bernardini@rm.unicatt.it
| | Sample_contact_phone | +390630154711
| | Sample_contact_department | Human Anatomy
| | Sample_contact_institute | UCSC
| | Sample_contact_address | L.go F.Vito 1
| | Sample_contact_city | Rome
| | Sample_contact_zip/postal_code | 00186
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1016nnn/GSM1016766/suppl/GSM1016766_c1.CEL.gz
| | Sample_series_id | GSE41414
| | Sample_data_row_count | 8793
| | |
|
GSM1016767 | GPL201 |
|
control_2
|
deltoid
|
Sex: male
tissue: deltoid
disease status: control
|
Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
|
| Sample_geo_accession | GSM1016767
| | Sample_status | Public on Feb 28 2013
| | Sample_submission_date | Oct 09 2012
| | Sample_last_update_date | Feb 28 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions. Tot RNA was further purified using the RNAeasy mini purification kit (QIAGEN) according to the RNA cleanup protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at 45C on HG 133A Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with oneChannelGui using rma as probeset summarization algoritm
| | Sample_platform_id | GPL201
| | Sample_contact_name | camilla,,bernardini
| | Sample_contact_email | camilla.bernardini@rm.unicatt.it
| | Sample_contact_phone | +390630154711
| | Sample_contact_department | Human Anatomy
| | Sample_contact_institute | UCSC
| | Sample_contact_address | L.go F.Vito 1
| | Sample_contact_city | Rome
| | Sample_contact_zip/postal_code | 00186
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1016nnn/GSM1016767/suppl/GSM1016767_c2.CEL.gz
| | Sample_series_id | GSE41414
| | Sample_data_row_count | 8793
| | |
|
GSM1016768 | GPL201 |
|
control_3
|
deltoid
|
Sex: male
tissue: deltoid
disease status: control
|
Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
|
| Sample_geo_accession | GSM1016768
| | Sample_status | Public on Feb 28 2013
| | Sample_submission_date | Oct 09 2012
| | Sample_last_update_date | Feb 28 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions. Tot RNA was further purified using the RNAeasy mini purification kit (QIAGEN) according to the RNA cleanup protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at 45C on HG 133A Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with oneChannelGui using rma as probeset summarization algoritm
| | Sample_platform_id | GPL201
| | Sample_contact_name | camilla,,bernardini
| | Sample_contact_email | camilla.bernardini@rm.unicatt.it
| | Sample_contact_phone | +390630154711
| | Sample_contact_department | Human Anatomy
| | Sample_contact_institute | UCSC
| | Sample_contact_address | L.go F.Vito 1
| | Sample_contact_city | Rome
| | Sample_contact_zip/postal_code | 00186
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1016nnn/GSM1016768/suppl/GSM1016768_c3.CEL.gz
| | Sample_series_id | GSE41414
| | Sample_data_row_count | 8793
| | |
|
GSM1016769 | GPL201 |
|
control_4
|
deltoid
|
Sex: female
tissue: deltoid
disease status: control
|
Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
|
| Sample_geo_accession | GSM1016769
| | Sample_status | Public on Feb 28 2013
| | Sample_submission_date | Oct 09 2012
| | Sample_last_update_date | Feb 28 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions. Tot RNA was further purified using the RNAeasy mini purification kit (QIAGEN) according to the RNA cleanup protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at 45C on HG 133A Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with oneChannelGui using rma as probeset summarization algoritm
| | Sample_platform_id | GPL201
| | Sample_contact_name | camilla,,bernardini
| | Sample_contact_email | camilla.bernardini@rm.unicatt.it
| | Sample_contact_phone | +390630154711
| | Sample_contact_department | Human Anatomy
| | Sample_contact_institute | UCSC
| | Sample_contact_address | L.go F.Vito 1
| | Sample_contact_city | Rome
| | Sample_contact_zip/postal_code | 00186
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1016nnn/GSM1016769/suppl/GSM1016769_c4.CEL.gz
| | Sample_series_id | GSE41414
| | Sample_data_row_count | 8793
| | |
|
GSM1016770 | GPL201 |
|
control_5
|
deltoid
|
Sex: female
tissue: deltoid
disease status: control
|
Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
|
| Sample_geo_accession | GSM1016770
| | Sample_status | Public on Feb 28 2013
| | Sample_submission_date | Oct 09 2012
| | Sample_last_update_date | Feb 28 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions. Tot RNA was further purified using the RNAeasy mini purification kit (QIAGEN) according to the RNA cleanup protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at 45C on HG 133A Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with oneChannelGui using rma as probeset summarization algoritm
| | Sample_platform_id | GPL201
| | Sample_contact_name | camilla,,bernardini
| | Sample_contact_email | camilla.bernardini@rm.unicatt.it
| | Sample_contact_phone | +390630154711
| | Sample_contact_department | Human Anatomy
| | Sample_contact_institute | UCSC
| | Sample_contact_address | L.go F.Vito 1
| | Sample_contact_city | Rome
| | Sample_contact_zip/postal_code | 00186
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1016nnn/GSM1016770/suppl/GSM1016770_c5.CEL.gz
| | Sample_series_id | GSE41414
| | Sample_data_row_count | 8793
| | |
|
GSM1016771 | GPL201 |
|
control_6
|
deltoid
|
Sex: female
tissue: deltoid
disease status: control
|
Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
|
| Sample_geo_accession | GSM1016771
| | Sample_status | Public on Feb 28 2013
| | Sample_submission_date | Oct 09 2012
| | Sample_last_update_date | Feb 28 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions. Tot RNA was further purified using the RNAeasy mini purification kit (QIAGEN) according to the RNA cleanup protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at 45C on HG 133A Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with oneChannelGui using rma as probeset summarization algoritm
| | Sample_platform_id | GPL201
| | Sample_contact_name | camilla,,bernardini
| | Sample_contact_email | camilla.bernardini@rm.unicatt.it
| | Sample_contact_phone | +390630154711
| | Sample_contact_department | Human Anatomy
| | Sample_contact_institute | UCSC
| | Sample_contact_address | L.go F.Vito 1
| | Sample_contact_city | Rome
| | Sample_contact_zip/postal_code | 00186
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1016nnn/GSM1016771/suppl/GSM1016771_c6.CEL.gz
| | Sample_series_id | GSE41414
| | Sample_data_row_count | 8793
| | |
|
GSM1016772 | GPL201 |
|
control_7
|
deltoid
|
Sex: male
tissue: deltoid
disease status: control
|
Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
|
| Sample_geo_accession | GSM1016772
| | Sample_status | Public on Feb 28 2013
| | Sample_submission_date | Oct 09 2012
| | Sample_last_update_date | Feb 28 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions. Tot RNA was further purified using the RNAeasy mini purification kit (QIAGEN) according to the RNA cleanup protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at 45C on HG 133A Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with oneChannelGui using rma as probeset summarization algoritm
| | Sample_platform_id | GPL201
| | Sample_contact_name | camilla,,bernardini
| | Sample_contact_email | camilla.bernardini@rm.unicatt.it
| | Sample_contact_phone | +390630154711
| | Sample_contact_department | Human Anatomy
| | Sample_contact_institute | UCSC
| | Sample_contact_address | L.go F.Vito 1
| | Sample_contact_city | Rome
| | Sample_contact_zip/postal_code | 00186
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1016nnn/GSM1016772/suppl/GSM1016772_c7.CEL.gz
| | Sample_series_id | GSE41414
| | Sample_data_row_count | 8793
| | |
|
GSM1016773 | GPL201 |
|
als_1
|
quadriceps
|
Sex: male
tissue: quadriceps
disease status: ALS
|
Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
|
| Sample_geo_accession | GSM1016773
| | Sample_status | Public on Feb 28 2013
| | Sample_submission_date | Oct 09 2012
| | Sample_last_update_date | Feb 28 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions. Tot RNA was further purified using the RNAeasy mini purification kit (QIAGEN) according to the RNA cleanup protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at 45C on HG 133A Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with oneChannelGui using rma as probeset summarization algoritm
| | Sample_platform_id | GPL201
| | Sample_contact_name | camilla,,bernardini
| | Sample_contact_email | camilla.bernardini@rm.unicatt.it
| | Sample_contact_phone | +390630154711
| | Sample_contact_department | Human Anatomy
| | Sample_contact_institute | UCSC
| | Sample_contact_address | L.go F.Vito 1
| | Sample_contact_city | Rome
| | Sample_contact_zip/postal_code | 00186
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1016nnn/GSM1016773/suppl/GSM1016773_a8.CEL.gz
| | Sample_series_id | GSE41414
| | Sample_data_row_count | 8793
| | |
|
GSM1016774 | GPL201 |
|
als_2
|
quadriceps
|
Sex: female
tissue: quadriceps
disease status: ALS
|
Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
|
| Sample_geo_accession | GSM1016774
| | Sample_status | Public on Feb 28 2013
| | Sample_submission_date | Oct 09 2012
| | Sample_last_update_date | Feb 28 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions. Tot RNA was further purified using the RNAeasy mini purification kit (QIAGEN) according to the RNA cleanup protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at 45C on HG 133A Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with oneChannelGui using rma as probeset summarization algoritm
| | Sample_platform_id | GPL201
| | Sample_contact_name | camilla,,bernardini
| | Sample_contact_email | camilla.bernardini@rm.unicatt.it
| | Sample_contact_phone | +390630154711
| | Sample_contact_department | Human Anatomy
| | Sample_contact_institute | UCSC
| | Sample_contact_address | L.go F.Vito 1
| | Sample_contact_city | Rome
| | Sample_contact_zip/postal_code | 00186
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1016nnn/GSM1016774/suppl/GSM1016774_a9.CEL.gz
| | Sample_series_id | GSE41414
| | Sample_data_row_count | 8793
| | |
|
GSM1016775 | GPL201 |
|
als_3
|
deltoid
|
Sex: female
tissue: deltoid
disease status: ALS
|
Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
|
| Sample_geo_accession | GSM1016775
| | Sample_status | Public on Feb 28 2013
| | Sample_submission_date | Oct 09 2012
| | Sample_last_update_date | Feb 28 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions. Tot RNA was further purified using the RNAeasy mini purification kit (QIAGEN) according to the RNA cleanup protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at 45C on HG 133A Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with oneChannelGui using rma as probeset summarization algoritm
| | Sample_platform_id | GPL201
| | Sample_contact_name | camilla,,bernardini
| | Sample_contact_email | camilla.bernardini@rm.unicatt.it
| | Sample_contact_phone | +390630154711
| | Sample_contact_department | Human Anatomy
| | Sample_contact_institute | UCSC
| | Sample_contact_address | L.go F.Vito 1
| | Sample_contact_city | Rome
| | Sample_contact_zip/postal_code | 00186
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1016nnn/GSM1016775/suppl/GSM1016775_a10.CEL.gz
| | Sample_series_id | GSE41414
| | Sample_data_row_count | 8793
| | |
|
GSM1016777 | GPL201 |
|
als_4
|
deltoid
|
Sex: male
tissue: deltoid
disease status: ALS
|
Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
|
| Sample_geo_accession | GSM1016777
| | Sample_status | Public on Feb 28 2013
| | Sample_submission_date | Oct 09 2012
| | Sample_last_update_date | Feb 28 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions. Tot RNA was further purified using the RNAeasy mini purification kit (QIAGEN) according to the RNA cleanup protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at 45C on HG 133A Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with oneChannelGui using rma as probeset summarization algoritm
| | Sample_platform_id | GPL201
| | Sample_contact_name | camilla,,bernardini
| | Sample_contact_email | camilla.bernardini@rm.unicatt.it
| | Sample_contact_phone | +390630154711
| | Sample_contact_department | Human Anatomy
| | Sample_contact_institute | UCSC
| | Sample_contact_address | L.go F.Vito 1
| | Sample_contact_city | Rome
| | Sample_contact_zip/postal_code | 00186
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1016nnn/GSM1016777/suppl/GSM1016777_a11.CEL.gz
| | Sample_series_id | GSE41414
| | Sample_data_row_count | 8793
| | |
|
GSM1016778 | GPL201 |
|
als_5
|
deltoid
|
Sex: male
tissue: deltoid
disease status: ALS
|
Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
|
| Sample_geo_accession | GSM1016778
| | Sample_status | Public on Feb 28 2013
| | Sample_submission_date | Oct 09 2012
| | Sample_last_update_date | Feb 28 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions. Tot RNA was further purified using the RNAeasy mini purification kit (QIAGEN) according to the RNA cleanup protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at 45C on HG 133A Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with oneChannelGui using rma as probeset summarization algoritm
| | Sample_platform_id | GPL201
| | Sample_contact_name | camilla,,bernardini
| | Sample_contact_email | camilla.bernardini@rm.unicatt.it
| | Sample_contact_phone | +390630154711
| | Sample_contact_department | Human Anatomy
| | Sample_contact_institute | UCSC
| | Sample_contact_address | L.go F.Vito 1
| | Sample_contact_city | Rome
| | Sample_contact_zip/postal_code | 00186
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1016nnn/GSM1016778/suppl/GSM1016778_a12.CEL.gz
| | Sample_series_id | GSE41414
| | Sample_data_row_count | 8793
| | |
|
GSM1016780 | GPL201 |
|
als_6
|
deltoid
|
Sex: female
tissue: deltoid
disease status: ALS
|
Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
|
| Sample_geo_accession | GSM1016780
| | Sample_status | Public on Feb 28 2013
| | Sample_submission_date | Oct 09 2012
| | Sample_last_update_date | Feb 28 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions. Tot RNA was further purified using the RNAeasy mini purification kit (QIAGEN) according to the RNA cleanup protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at 45C on HG 133A Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with oneChannelGui using rma as probeset summarization algoritm
| | Sample_platform_id | GPL201
| | Sample_contact_name | camilla,,bernardini
| | Sample_contact_email | camilla.bernardini@rm.unicatt.it
| | Sample_contact_phone | +390630154711
| | Sample_contact_department | Human Anatomy
| | Sample_contact_institute | UCSC
| | Sample_contact_address | L.go F.Vito 1
| | Sample_contact_city | Rome
| | Sample_contact_zip/postal_code | 00186
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1016nnn/GSM1016780/suppl/GSM1016780_a13.CEL.gz
| | Sample_series_id | GSE41414
| | Sample_data_row_count | 8793
| | |
|
GSM1016782 | GPL201 |
|
als_7
|
quadriceps
|
Sex: male
tissue: quadriceps
disease status: ALS
|
Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
|
| Sample_geo_accession | GSM1016782
| | Sample_status | Public on Feb 28 2013
| | Sample_submission_date | Oct 09 2012
| | Sample_last_update_date | Feb 28 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions. Tot RNA was further purified using the RNAeasy mini purification kit (QIAGEN) according to the RNA cleanup protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at 45C on HG 133A Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with oneChannelGui using rma as probeset summarization algoritm
| | Sample_platform_id | GPL201
| | Sample_contact_name | camilla,,bernardini
| | Sample_contact_email | camilla.bernardini@rm.unicatt.it
| | Sample_contact_phone | +390630154711
| | Sample_contact_department | Human Anatomy
| | Sample_contact_institute | UCSC
| | Sample_contact_address | L.go F.Vito 1
| | Sample_contact_city | Rome
| | Sample_contact_zip/postal_code | 00186
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1016nnn/GSM1016782/suppl/GSM1016782_a14.CEL.gz
| | Sample_series_id | GSE41414
| | Sample_data_row_count | 8793
| | |
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