Search results for the GEO ID: GSE41418 |
(Click on the check boxes provided under "Select for analysis", to initiate grouping) |
(Once the selection is made, click on "Add groups" in "Make groups for comparison", to make a group. Scroll down) |
|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM1016804 | GPL1261 |
|
Harlan mice, cerulein treated, biological rep1
|
Pancreas, chronic pancreatitis
|
tissue: Pancreas
strain: C57BL6/NHsd
age: 8 week
disease state: cerulein induced chronic pancreatitis
|
Gene expression data from pancreas of C57BL6/NHsd mice with cerulein induced chronic pancreatitis
|
Sample_geo_accession | GSM1016804
| Sample_status | Public on Oct 10 2012
| Sample_submission_date | Oct 09 2012
| Sample_last_update_date | Oct 10 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted with Trizol reagent according to manufacturer's instructions and further purified by Rneasy Kit (Qiagen)
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 100 ng total RNA (3_ivt_express_kit_manual, 2008, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse Genome 430 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 7G.
| Sample_data_processing | The prelimainary data analysis was performed R/Bioconductor using gcRMA normalization method (which outputs log2-transformed expression values) and statistical analysiswas performed with Partek Genomics Suite software.
| Sample_platform_id | GPL1261
| Sample_contact_name | Audrey,,Watson
| Sample_contact_email | awatso21@slu.edu
| Sample_contact_institute | Saint Louis University
| Sample_contact_address | 1100 South Grand
| Sample_contact_city | Saint Louis
| Sample_contact_state | Missouri
| Sample_contact_zip/postal_code | 63104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1016nnn/GSM1016804/suppl/GSM1016804_Harlan_cerulein_1.CEL.gz
| Sample_series_id | GSE41418
| Sample_data_row_count | 45101
| |
|
GSM1016805 | GPL1261 |
|
Harlan mice, cerulein treated, biological rep 2
|
Pancreas, chronic pancreatitis
|
tissue: Pancreas
strain: C57BL6/NHsd
age: 8 week
disease state: cerulein induced chronic pancreatitis
|
Gene expression data from pancreas of C57BL6/NHsd mice with cerulein induced chronic pancreatitis
|
Sample_geo_accession | GSM1016805
| Sample_status | Public on Oct 10 2012
| Sample_submission_date | Oct 09 2012
| Sample_last_update_date | Oct 10 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted with Trizol reagent according to manufacturer's instructions and further purified by Rneasy Kit (Qiagen)
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 100 ng total RNA (3_ivt_express_kit_manual, 2008, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse Genome 430 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 7G.
| Sample_data_processing | The prelimainary data analysis was performed R/Bioconductor using gcRMA normalization method (which outputs log2-transformed expression values) and statistical analysiswas performed with Partek Genomics Suite software.
| Sample_platform_id | GPL1261
| Sample_contact_name | Audrey,,Watson
| Sample_contact_email | awatso21@slu.edu
| Sample_contact_institute | Saint Louis University
| Sample_contact_address | 1100 South Grand
| Sample_contact_city | Saint Louis
| Sample_contact_state | Missouri
| Sample_contact_zip/postal_code | 63104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1016nnn/GSM1016805/suppl/GSM1016805_Harlan_cerulein_2.CEL.gz
| Sample_series_id | GSE41418
| Sample_data_row_count | 45101
| |
|
GSM1016806 | GPL1261 |
|
Harlan mice, cerulein treated, biological rep 3
|
Pancreas, chronic pancreatitis
|
tissue: Pancreas
strain: C57BL6/NHsd
age: 8 week
disease state: cerulein induced chronic pancreatitis
|
Gene expression data from pancreas of C57BL6/NHsd mice with cerulein induced chronic pancreatitis
|
Sample_geo_accession | GSM1016806
| Sample_status | Public on Oct 10 2012
| Sample_submission_date | Oct 09 2012
| Sample_last_update_date | Oct 10 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted with Trizol reagent according to manufacturer's instructions and further purified by Rneasy Kit (Qiagen)
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 100 ng total RNA (3_ivt_express_kit_manual, 2008, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse Genome 430 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 7G.
| Sample_data_processing | The prelimainary data analysis was performed R/Bioconductor using gcRMA normalization method (which outputs log2-transformed expression values) and statistical analysiswas performed with Partek Genomics Suite software.
| Sample_platform_id | GPL1261
| Sample_contact_name | Audrey,,Watson
| Sample_contact_email | awatso21@slu.edu
| Sample_contact_institute | Saint Louis University
| Sample_contact_address | 1100 South Grand
| Sample_contact_city | Saint Louis
| Sample_contact_state | Missouri
| Sample_contact_zip/postal_code | 63104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1016nnn/GSM1016806/suppl/GSM1016806_Harlan_cerulein_3.CEL.gz
| Sample_series_id | GSE41418
| Sample_data_row_count | 45101
| |
|
GSM1016807 | GPL1261 |
|
Jackson mice, cerulein treated, biological rep1
|
Pancreas, chronic pancreatitis
|
tissue: Pancreas
strain: C57BL6/J
age: 8 week
disease state: cerulein induced chronic pancreatitis
|
Gene expression data from pancreas of C57BL6/J mice with cerulein induced chronic pancreatitis
|
Sample_geo_accession | GSM1016807
| Sample_status | Public on Oct 10 2012
| Sample_submission_date | Oct 09 2012
| Sample_last_update_date | Oct 10 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted with Trizol reagent according to manufacturer's instructions and further purified by Rneasy Kit (Qiagen)
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 100 ng total RNA (3_ivt_express_kit_manual, 2008, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse Genome 430 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 7G.
| Sample_data_processing | The prelimainary data analysis was performed R/Bioconductor using gcRMA normalization method (which outputs log2-transformed expression values) and statistical analysiswas performed with Partek Genomics Suite software.
| Sample_platform_id | GPL1261
| Sample_contact_name | Audrey,,Watson
| Sample_contact_email | awatso21@slu.edu
| Sample_contact_institute | Saint Louis University
| Sample_contact_address | 1100 South Grand
| Sample_contact_city | Saint Louis
| Sample_contact_state | Missouri
| Sample_contact_zip/postal_code | 63104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1016nnn/GSM1016807/suppl/GSM1016807_Jackson_cerulein_9.CEL.gz
| Sample_series_id | GSE41418
| Sample_data_row_count | 45101
| |
|
GSM1016808 | GPL1261 |
|
Jackson mice, cerulein treated, biological rep 2
|
Pancreas, chronic pancreatitis
|
tissue: Pancreas
strain: C57BL6/J
age: 8 week
disease state: cerulein induced chronic pancreatitis
|
Gene expression data from pancreas of C57BL6/J mice with cerulein induced chronic pancreatitis
|
Sample_geo_accession | GSM1016808
| Sample_status | Public on Oct 10 2012
| Sample_submission_date | Oct 09 2012
| Sample_last_update_date | Oct 10 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted with Trizol reagent according to manufacturer's instructions and further purified by Rneasy Kit (Qiagen)
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 100 ng total RNA (3_ivt_express_kit_manual, 2008, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse Genome 430 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 7G.
| Sample_data_processing | The prelimainary data analysis was performed R/Bioconductor using gcRMA normalization method (which outputs log2-transformed expression values) and statistical analysiswas performed with Partek Genomics Suite software.
| Sample_platform_id | GPL1261
| Sample_contact_name | Audrey,,Watson
| Sample_contact_email | awatso21@slu.edu
| Sample_contact_institute | Saint Louis University
| Sample_contact_address | 1100 South Grand
| Sample_contact_city | Saint Louis
| Sample_contact_state | Missouri
| Sample_contact_zip/postal_code | 63104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1016nnn/GSM1016808/suppl/GSM1016808_Jackson_cerulein_10.CEL.gz
| Sample_series_id | GSE41418
| Sample_data_row_count | 45101
| |
|
GSM1016809 | GPL1261 |
|
Jackson mice, cerulein treated, biological rep 3
|
Pancreas, chronic pancreatitis
|
tissue: Pancreas
strain: C57BL6/J
age: 8 week
disease state: cerulein induced chronic pancreatitis
|
Gene expression data from pancreas of C57BL6/J mice with cerulein induced chronic pancreatitis
|
Sample_geo_accession | GSM1016809
| Sample_status | Public on Oct 10 2012
| Sample_submission_date | Oct 09 2012
| Sample_last_update_date | Oct 10 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted with Trizol reagent according to manufacturer's instructions and further purified by Rneasy Kit (Qiagen)
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 100 ng total RNA (3_ivt_express_kit_manual, 2008, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse Genome 430 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 7G.
| Sample_data_processing | The prelimainary data analysis was performed R/Bioconductor using gcRMA normalization method (which outputs log2-transformed expression values) and statistical analysiswas performed with Partek Genomics Suite software.
| Sample_platform_id | GPL1261
| Sample_contact_name | Audrey,,Watson
| Sample_contact_email | awatso21@slu.edu
| Sample_contact_institute | Saint Louis University
| Sample_contact_address | 1100 South Grand
| Sample_contact_city | Saint Louis
| Sample_contact_state | Missouri
| Sample_contact_zip/postal_code | 63104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1016nnn/GSM1016809/suppl/GSM1016809_Jackson_cerulein_11.CEL.gz
| Sample_series_id | GSE41418
| Sample_data_row_count | 45101
| |
|
GSM1016810 | GPL1261 |
|
Harlan mice, control, biological rep1
|
Pancreas, control
|
tissue: Pancreas
strain: C57BL6/NHsd
gender: female
age: 8 week
disease state: control
|
Gene expression data from control pancreas of C57BL6/NHsd mice
|
Sample_geo_accession | GSM1016810
| Sample_status | Public on Oct 10 2012
| Sample_submission_date | Oct 09 2012
| Sample_last_update_date | Oct 10 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted with Trizol reagent according to manufacturer's instructions and further purified by Rneasy Kit (Qiagen)
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 100 ng total RNA (3_ivt_express_kit_manual, 2008, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse Genome 430 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 7G.
| Sample_data_processing | The prelimainary data analysis was performed R/Bioconductor using gcRMA normalization method (which outputs log2-transformed expression values) and statistical analysiswas performed with Partek Genomics Suite software.
| Sample_platform_id | GPL1261
| Sample_contact_name | Audrey,,Watson
| Sample_contact_email | awatso21@slu.edu
| Sample_contact_institute | Saint Louis University
| Sample_contact_address | 1100 South Grand
| Sample_contact_city | Saint Louis
| Sample_contact_state | Missouri
| Sample_contact_zip/postal_code | 63104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1016nnn/GSM1016810/suppl/GSM1016810_Harlan_Control_29.CEL.gz
| Sample_series_id | GSE41418
| Sample_data_row_count | 45101
| |
|
GSM1016811 | GPL1261 |
|
Harlan mice, control, biological rep 2
|
Pancreas, control
|
tissue: Pancreas
strain: C57BL6/NHsd
gender: female
age: 8 week
disease state: control
|
Gene expression data from control pancreas of C57BL6/NHsd mice
|
Sample_geo_accession | GSM1016811
| Sample_status | Public on Oct 10 2012
| Sample_submission_date | Oct 09 2012
| Sample_last_update_date | Oct 10 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted with Trizol reagent according to manufacturer's instructions and further purified by Rneasy Kit (Qiagen)
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 100 ng total RNA (3_ivt_express_kit_manual, 2008, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse Genome 430 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 7G.
| Sample_data_processing | The prelimainary data analysis was performed R/Bioconductor using gcRMA normalization method (which outputs log2-transformed expression values) and statistical analysiswas performed with Partek Genomics Suite software.
| Sample_platform_id | GPL1261
| Sample_contact_name | Audrey,,Watson
| Sample_contact_email | awatso21@slu.edu
| Sample_contact_institute | Saint Louis University
| Sample_contact_address | 1100 South Grand
| Sample_contact_city | Saint Louis
| Sample_contact_state | Missouri
| Sample_contact_zip/postal_code | 63104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1016nnn/GSM1016811/suppl/GSM1016811_Harlan_Control_30.CEL.gz
| Sample_series_id | GSE41418
| Sample_data_row_count | 45101
| |
|
GSM1016812 | GPL1261 |
|
Harlan mice, control, biological rep 3
|
Pancreas, control
|
tissue: Pancreas
strain: C57BL6/NHsd
gender: female
age: 8 week
disease state: control
|
Gene expression data from control pancreas of C57BL6/NHsd mice
|
Sample_geo_accession | GSM1016812
| Sample_status | Public on Oct 10 2012
| Sample_submission_date | Oct 09 2012
| Sample_last_update_date | Oct 10 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted with Trizol reagent according to manufacturer's instructions and further purified by Rneasy Kit (Qiagen)
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 100 ng total RNA (3_ivt_express_kit_manual, 2008, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse Genome 430 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 7G.
| Sample_data_processing | The prelimainary data analysis was performed R/Bioconductor using gcRMA normalization method (which outputs log2-transformed expression values) and statistical analysiswas performed with Partek Genomics Suite software.
| Sample_platform_id | GPL1261
| Sample_contact_name | Audrey,,Watson
| Sample_contact_email | awatso21@slu.edu
| Sample_contact_institute | Saint Louis University
| Sample_contact_address | 1100 South Grand
| Sample_contact_city | Saint Louis
| Sample_contact_state | Missouri
| Sample_contact_zip/postal_code | 63104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1016nnn/GSM1016812/suppl/GSM1016812_Harlan_Control_31.CEL.gz
| Sample_series_id | GSE41418
| Sample_data_row_count | 45101
| |
|
GSM1016813 | GPL1261 |
|
Jackson mice, controls, biological rep1
|
Pancreas, control
|
tissue: Pancreas
strain: C57BL6/J
gender: female
age: 8 week
disease state: control
|
Gene expression data from control pancreas of C57BL6/J mice
|
Sample_geo_accession | GSM1016813
| Sample_status | Public on Oct 10 2012
| Sample_submission_date | Oct 09 2012
| Sample_last_update_date | Oct 10 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted with Trizol reagent according to manufacturer's instructions and further purified by Rneasy Kit (Qiagen)
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 100 ng total RNA (3_ivt_express_kit_manual, 2008, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse Genome 430 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 7G.
| Sample_data_processing | The prelimainary data analysis was performed R/Bioconductor using gcRMA normalization method (which outputs log2-transformed expression values) and statistical analysiswas performed with Partek Genomics Suite software.
| Sample_platform_id | GPL1261
| Sample_contact_name | Audrey,,Watson
| Sample_contact_email | awatso21@slu.edu
| Sample_contact_institute | Saint Louis University
| Sample_contact_address | 1100 South Grand
| Sample_contact_city | Saint Louis
| Sample_contact_state | Missouri
| Sample_contact_zip/postal_code | 63104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1016nnn/GSM1016813/suppl/GSM1016813_Jackson_Control_37.CEL.gz
| Sample_series_id | GSE41418
| Sample_data_row_count | 45101
| |
|
GSM1016814 | GPL1261 |
|
Jackson mice, control, biological rep 2
|
Pancreas, control
|
tissue: Pancreas
strain: C57BL6/J
gender: female
age: 8 week
disease state: control
|
Gene expression data from control pancreas of C57BL6/J mice
|
Sample_geo_accession | GSM1016814
| Sample_status | Public on Oct 10 2012
| Sample_submission_date | Oct 09 2012
| Sample_last_update_date | Oct 10 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted with Trizol reagent according to manufacturer's instructions and further purified by Rneasy Kit (Qiagen)
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 100 ng total RNA (3_ivt_express_kit_manual, 2008, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse Genome 430 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 7G.
| Sample_data_processing | The prelimainary data analysis was performed R/Bioconductor using gcRMA normalization method (which outputs log2-transformed expression values) and statistical analysiswas performed with Partek Genomics Suite software.
| Sample_platform_id | GPL1261
| Sample_contact_name | Audrey,,Watson
| Sample_contact_email | awatso21@slu.edu
| Sample_contact_institute | Saint Louis University
| Sample_contact_address | 1100 South Grand
| Sample_contact_city | Saint Louis
| Sample_contact_state | Missouri
| Sample_contact_zip/postal_code | 63104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1016nnn/GSM1016814/suppl/GSM1016814_Jackson_Control_38.CEL.gz
| Sample_series_id | GSE41418
| Sample_data_row_count | 45101
| |
|
GSM1016815 | GPL1261 |
|
Jackson mice, control, biological rep 3
|
Pancreas, control
|
tissue: Pancreas
strain: C57BL6/J
gender: female
age: 8 week
disease state: control
|
Gene expression data from control pancreas of C57BL6/J mice
|
Sample_geo_accession | GSM1016815
| Sample_status | Public on Oct 10 2012
| Sample_submission_date | Oct 09 2012
| Sample_last_update_date | Oct 10 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted with Trizol reagent according to manufacturer's instructions and further purified by Rneasy Kit (Qiagen)
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 100 ng total RNA (3_ivt_express_kit_manual, 2008, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse Genome 430 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 7G.
| Sample_data_processing | The prelimainary data analysis was performed R/Bioconductor using gcRMA normalization method (which outputs log2-transformed expression values) and statistical analysiswas performed with Partek Genomics Suite software.
| Sample_platform_id | GPL1261
| Sample_contact_name | Audrey,,Watson
| Sample_contact_email | awatso21@slu.edu
| Sample_contact_institute | Saint Louis University
| Sample_contact_address | 1100 South Grand
| Sample_contact_city | Saint Louis
| Sample_contact_state | Missouri
| Sample_contact_zip/postal_code | 63104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1016nnn/GSM1016815/suppl/GSM1016815_Jackson_Control_39.CEL.gz
| Sample_series_id | GSE41418
| Sample_data_row_count | 45101
| |
|
|
|
Make groups for comparisons |
(2 groups will be compared at a time) |
|
Select GSMs and click on "Add groups" |
Enter the group name here: |
|
|
|