Search results for the GEO ID: GSE41559  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM1019098 | GPL570 |
|
PC-3_basalhTERT_ShortTelomeres_mock_1
|
Human prostate cancer cell line
|
cell line: prostate cancer cell line PC-3
telomere status: Short
exogenous htert: absent
|
mock
|
| Sample_geo_accession | GSM1019098
| | Sample_status | Public on May 31 2013
| | Sample_submission_date | Oct 12 2012
| | Sample_last_update_date | May 31 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | no treatment.
| | Sample_growth_protocol_ch1 | 1x10^6 cells were subcutaneously injected into five-week-old female nude mice with a BALB/c genetic background. When the tumor size reached at least 5 mm in diameter, mice were euthanized and tumor tissue was collected.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA extraction from tumor xenografts were performed by using the RNeasy kit and Tissue Lyser (Qiagen) according to the manufacturer’s protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 100ng total RNA.
| | Sample_hyb_protocol | Standard Affymetrix protocol.
| | Sample_scan_protocol | Standard Affymetrix protocol.
| | Sample_data_processing | Gene-level expression signals were obtained by processing of raw data with the RMA procedure using GeneSpring GX (Agilent Technologies).
| | Sample_platform_id | GPL570
| | Sample_contact_name | kyotaro,,HIRASHIMA
| | Sample_contact_laboratory | Division of Molecular Biotherapy
| | Sample_contact_department | Cancer Chemotherapy Center
| | Sample_contact_institute | The JFCR-Cancer Inst.
| | Sample_contact_address | 3-8-31 Ariake
| | Sample_contact_city | Koto-ku
| | Sample_contact_state | Tokyo
| | Sample_contact_zip/postal_code | 135-8550
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1019nnn/GSM1019098/suppl/GSM1019098_mock_1.CEL.gz
| | Sample_series_id | GSE41559
| | Sample_data_row_count | 54675
| | |
|
GSM1019099 | GPL570 |
|
PC-3_basalhTERT_ShortTelomeres_mock_2
|
Human prostate cancer cell line
|
cell line: prostate cancer cell line PC-3
telomere status: Short
exogenous htert: absent
|
mock
|
| Sample_geo_accession | GSM1019099
| | Sample_status | Public on May 31 2013
| | Sample_submission_date | Oct 12 2012
| | Sample_last_update_date | May 31 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | no treatment.
| | Sample_growth_protocol_ch1 | 1x10^6 cells were subcutaneously injected into five-week-old female nude mice with a BALB/c genetic background. When the tumor size reached at least 5 mm in diameter, mice were euthanized and tumor tissue was collected.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA extraction from tumor xenografts were performed by using the RNeasy kit and Tissue Lyser (Qiagen) according to the manufacturer’s protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 100ng total RNA.
| | Sample_hyb_protocol | Standard Affymetrix protocol.
| | Sample_scan_protocol | Standard Affymetrix protocol.
| | Sample_data_processing | Gene-level expression signals were obtained by processing of raw data with the RMA procedure using GeneSpring GX (Agilent Technologies).
| | Sample_platform_id | GPL570
| | Sample_contact_name | kyotaro,,HIRASHIMA
| | Sample_contact_laboratory | Division of Molecular Biotherapy
| | Sample_contact_department | Cancer Chemotherapy Center
| | Sample_contact_institute | The JFCR-Cancer Inst.
| | Sample_contact_address | 3-8-31 Ariake
| | Sample_contact_city | Koto-ku
| | Sample_contact_state | Tokyo
| | Sample_contact_zip/postal_code | 135-8550
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1019nnn/GSM1019099/suppl/GSM1019099_mock_2.CEL.gz
| | Sample_series_id | GSE41559
| | Sample_data_row_count | 54675
| | |
|
GSM1019100 | GPL570 |
|
PC-3_basalhTERT_ShortTelomeres_mock_3
|
Human prostate cancer cell line
|
cell line: prostate cancer cell line PC-3
telomere status: Short
exogenous htert: absent
|
mock
|
| Sample_geo_accession | GSM1019100
| | Sample_status | Public on May 31 2013
| | Sample_submission_date | Oct 12 2012
| | Sample_last_update_date | May 31 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | no treatment.
| | Sample_growth_protocol_ch1 | 1x10^6 cells were subcutaneously injected into five-week-old female nude mice with a BALB/c genetic background. When the tumor size reached at least 5 mm in diameter, mice were euthanized and tumor tissue was collected.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA extraction from tumor xenografts were performed by using the RNeasy kit and Tissue Lyser (Qiagen) according to the manufacturer’s protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 100ng total RNA.
| | Sample_hyb_protocol | Standard Affymetrix protocol.
| | Sample_scan_protocol | Standard Affymetrix protocol.
| | Sample_data_processing | Gene-level expression signals were obtained by processing of raw data with the RMA procedure using GeneSpring GX (Agilent Technologies).
| | Sample_platform_id | GPL570
| | Sample_contact_name | kyotaro,,HIRASHIMA
| | Sample_contact_laboratory | Division of Molecular Biotherapy
| | Sample_contact_department | Cancer Chemotherapy Center
| | Sample_contact_institute | The JFCR-Cancer Inst.
| | Sample_contact_address | 3-8-31 Ariake
| | Sample_contact_city | Koto-ku
| | Sample_contact_state | Tokyo
| | Sample_contact_zip/postal_code | 135-8550
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1019nnn/GSM1019100/suppl/GSM1019100_mock_3.CEL.gz
| | Sample_series_id | GSE41559
| | Sample_data_row_count | 54675
| | |
|
GSM1019101 | GPL570 |
|
PC-3_basalhTERT_ShortTelomeres_mock_4
|
Human prostate cancer cell line
|
cell line: prostate cancer cell line PC-3
telomere status: Short
exogenous htert: absent
|
mock
|
| Sample_geo_accession | GSM1019101
| | Sample_status | Public on May 31 2013
| | Sample_submission_date | Oct 12 2012
| | Sample_last_update_date | May 31 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | no treatment.
| | Sample_growth_protocol_ch1 | 1x10^6 cells were subcutaneously injected into five-week-old female nude mice with a BALB/c genetic background. When the tumor size reached at least 5 mm in diameter, mice were euthanized and tumor tissue was collected.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA extraction from tumor xenografts were performed by using the RNeasy kit and Tissue Lyser (Qiagen) according to the manufacturer’s protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 100ng total RNA.
| | Sample_hyb_protocol | Standard Affymetrix protocol.
| | Sample_scan_protocol | Standard Affymetrix protocol.
| | Sample_data_processing | Gene-level expression signals were obtained by processing of raw data with the RMA procedure using GeneSpring GX (Agilent Technologies).
| | Sample_platform_id | GPL570
| | Sample_contact_name | kyotaro,,HIRASHIMA
| | Sample_contact_laboratory | Division of Molecular Biotherapy
| | Sample_contact_department | Cancer Chemotherapy Center
| | Sample_contact_institute | The JFCR-Cancer Inst.
| | Sample_contact_address | 3-8-31 Ariake
| | Sample_contact_city | Koto-ku
| | Sample_contact_state | Tokyo
| | Sample_contact_zip/postal_code | 135-8550
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1019nnn/GSM1019101/suppl/GSM1019101_mock_4.CEL.gz
| | Sample_series_id | GSE41559
| | Sample_data_row_count | 54675
| | |
|
GSM1019102 | GPL570 |
|
PC-3_overexpresshTERT_LongTelomeres_LhTERTL_1
|
Human prostate cancer cell line
|
cell line: prostate cancer cell line PC-3
telomere status: Long
exogenous htert: present
|
LhTERTL
|
| Sample_geo_accession | GSM1019102
| | Sample_status | Public on May 31 2013
| | Sample_submission_date | Oct 12 2012
| | Sample_last_update_date | May 31 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | no treatment.
| | Sample_growth_protocol_ch1 | 1x10^6 cells were subcutaneously injected into five-week-old female nude mice with a BALB/c genetic background. When the tumor size reached at least 5 mm in diameter, mice were euthanized and tumor tissue was collected.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA extraction from tumor xenografts were performed by using the RNeasy kit and Tissue Lyser (Qiagen) according to the manufacturer’s protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 100ng total RNA.
| | Sample_hyb_protocol | Standard Affymetrix protocol.
| | Sample_scan_protocol | Standard Affymetrix protocol.
| | Sample_data_processing | Gene-level expression signals were obtained by processing of raw data with the RMA procedure using GeneSpring GX (Agilent Technologies).
| | Sample_platform_id | GPL570
| | Sample_contact_name | kyotaro,,HIRASHIMA
| | Sample_contact_laboratory | Division of Molecular Biotherapy
| | Sample_contact_department | Cancer Chemotherapy Center
| | Sample_contact_institute | The JFCR-Cancer Inst.
| | Sample_contact_address | 3-8-31 Ariake
| | Sample_contact_city | Koto-ku
| | Sample_contact_state | Tokyo
| | Sample_contact_zip/postal_code | 135-8550
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1019nnn/GSM1019102/suppl/GSM1019102_LhTERTL_1.CEL.gz
| | Sample_series_id | GSE41559
| | Sample_data_row_count | 54675
| | |
|
GSM1019103 | GPL570 |
|
PC-3_overexpresshTERT_LongTelomeres_LhTERTL_2
|
Human prostate cancer cell line
|
cell line: prostate cancer cell line PC-3
telomere status: Long
exogenous htert: present
|
LhTERTL
|
| Sample_geo_accession | GSM1019103
| | Sample_status | Public on May 31 2013
| | Sample_submission_date | Oct 12 2012
| | Sample_last_update_date | May 31 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | no treatment.
| | Sample_growth_protocol_ch1 | 1x10^6 cells were subcutaneously injected into five-week-old female nude mice with a BALB/c genetic background. When the tumor size reached at least 5 mm in diameter, mice were euthanized and tumor tissue was collected.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA extraction from tumor xenografts were performed by using the RNeasy kit and Tissue Lyser (Qiagen) according to the manufacturer’s protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 100ng total RNA.
| | Sample_hyb_protocol | Standard Affymetrix protocol.
| | Sample_scan_protocol | Standard Affymetrix protocol.
| | Sample_data_processing | Gene-level expression signals were obtained by processing of raw data with the RMA procedure using GeneSpring GX (Agilent Technologies).
| | Sample_platform_id | GPL570
| | Sample_contact_name | kyotaro,,HIRASHIMA
| | Sample_contact_laboratory | Division of Molecular Biotherapy
| | Sample_contact_department | Cancer Chemotherapy Center
| | Sample_contact_institute | The JFCR-Cancer Inst.
| | Sample_contact_address | 3-8-31 Ariake
| | Sample_contact_city | Koto-ku
| | Sample_contact_state | Tokyo
| | Sample_contact_zip/postal_code | 135-8550
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1019nnn/GSM1019103/suppl/GSM1019103_LhTERTL_2.CEL.gz
| | Sample_series_id | GSE41559
| | Sample_data_row_count | 54675
| | |
|
GSM1019104 | GPL570 |
|
PC-3_overexpresshTERT_LongTelomeres_LhTERTL_3
|
Human prostate cancer cell line
|
cell line: prostate cancer cell line PC-3
telomere status: Long
exogenous htert: present
|
LhTERTL
|
| Sample_geo_accession | GSM1019104
| | Sample_status | Public on May 31 2013
| | Sample_submission_date | Oct 12 2012
| | Sample_last_update_date | May 31 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | no treatment.
| | Sample_growth_protocol_ch1 | 1x10^6 cells were subcutaneously injected into five-week-old female nude mice with a BALB/c genetic background. When the tumor size reached at least 5 mm in diameter, mice were euthanized and tumor tissue was collected.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA extraction from tumor xenografts were performed by using the RNeasy kit and Tissue Lyser (Qiagen) according to the manufacturer’s protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 100ng total RNA.
| | Sample_hyb_protocol | Standard Affymetrix protocol.
| | Sample_scan_protocol | Standard Affymetrix protocol.
| | Sample_data_processing | Gene-level expression signals were obtained by processing of raw data with the RMA procedure using GeneSpring GX (Agilent Technologies).
| | Sample_platform_id | GPL570
| | Sample_contact_name | kyotaro,,HIRASHIMA
| | Sample_contact_laboratory | Division of Molecular Biotherapy
| | Sample_contact_department | Cancer Chemotherapy Center
| | Sample_contact_institute | The JFCR-Cancer Inst.
| | Sample_contact_address | 3-8-31 Ariake
| | Sample_contact_city | Koto-ku
| | Sample_contact_state | Tokyo
| | Sample_contact_zip/postal_code | 135-8550
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1019nnn/GSM1019104/suppl/GSM1019104_LhTERTL_3.CEL.gz
| | Sample_series_id | GSE41559
| | Sample_data_row_count | 54675
| | |
|
GSM1019105 | GPL570 |
|
PC-3_overexpresshTERT_LongTelomeres_LhTERTL_4
|
Human prostate cancer cell line
|
cell line: prostate cancer cell line PC-3
telomere status: Long
exogenous htert: present
|
LhTERTL
|
| Sample_geo_accession | GSM1019105
| | Sample_status | Public on May 31 2013
| | Sample_submission_date | Oct 12 2012
| | Sample_last_update_date | May 31 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | no treatment.
| | Sample_growth_protocol_ch1 | 1x10^6 cells were subcutaneously injected into five-week-old female nude mice with a BALB/c genetic background. When the tumor size reached at least 5 mm in diameter, mice were euthanized and tumor tissue was collected.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA extraction from tumor xenografts were performed by using the RNeasy kit and Tissue Lyser (Qiagen) according to the manufacturer’s protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 100ng total RNA.
| | Sample_hyb_protocol | Standard Affymetrix protocol.
| | Sample_scan_protocol | Standard Affymetrix protocol.
| | Sample_data_processing | Gene-level expression signals were obtained by processing of raw data with the RMA procedure using GeneSpring GX (Agilent Technologies).
| | Sample_platform_id | GPL570
| | Sample_contact_name | kyotaro,,HIRASHIMA
| | Sample_contact_laboratory | Division of Molecular Biotherapy
| | Sample_contact_department | Cancer Chemotherapy Center
| | Sample_contact_institute | The JFCR-Cancer Inst.
| | Sample_contact_address | 3-8-31 Ariake
| | Sample_contact_city | Koto-ku
| | Sample_contact_state | Tokyo
| | Sample_contact_zip/postal_code | 135-8550
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1019nnn/GSM1019105/suppl/GSM1019105_LhTERTL_4.CEL.gz
| | Sample_series_id | GSE41559
| | Sample_data_row_count | 54675
| | |
|
GSM1019106 | GPL570 |
|
PC-3_basalhTERT_ShortTelomeres_mockcre_1
|
Human prostate cancer cell line
|
cell line: prostate cancer cell line PC-3
telomere status: Short
exogenous htert: absent
|
mock/cre+
|
| Sample_geo_accession | GSM1019106
| | Sample_status | Public on May 31 2013
| | Sample_submission_date | Oct 12 2012
| | Sample_last_update_date | May 31 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | no treatment.
| | Sample_growth_protocol_ch1 | 1x10^6 cells were subcutaneously injected into five-week-old female nude mice with a BALB/c genetic background. When the tumor size reached at least 5 mm in diameter, mice were euthanized and tumor tissue was collected.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA extraction from tumor xenografts were performed by using the RNeasy kit and Tissue Lyser (Qiagen) according to the manufacturer’s protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 100ng total RNA.
| | Sample_hyb_protocol | Standard Affymetrix protocol.
| | Sample_scan_protocol | Standard Affymetrix protocol.
| | Sample_data_processing | Gene-level expression signals were obtained by processing of raw data with the RMA procedure using GeneSpring GX (Agilent Technologies).
| | Sample_platform_id | GPL570
| | Sample_contact_name | kyotaro,,HIRASHIMA
| | Sample_contact_laboratory | Division of Molecular Biotherapy
| | Sample_contact_department | Cancer Chemotherapy Center
| | Sample_contact_institute | The JFCR-Cancer Inst.
| | Sample_contact_address | 3-8-31 Ariake
| | Sample_contact_city | Koto-ku
| | Sample_contact_state | Tokyo
| | Sample_contact_zip/postal_code | 135-8550
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1019nnn/GSM1019106/suppl/GSM1019106_mockcre_1.CEL.gz
| | Sample_series_id | GSE41559
| | Sample_data_row_count | 54675
| | |
|
GSM1019107 | GPL570 |
|
PC-3_basalhTERT_ShortTelomeres_mockcre_2
|
Human prostate cancer cell line
|
cell line: prostate cancer cell line PC-3
telomere status: Short
exogenous htert: absent
|
mock/cre+
|
| Sample_geo_accession | GSM1019107
| | Sample_status | Public on May 31 2013
| | Sample_submission_date | Oct 12 2012
| | Sample_last_update_date | May 31 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | no treatment.
| | Sample_growth_protocol_ch1 | 1x10^6 cells were subcutaneously injected into five-week-old female nude mice with a BALB/c genetic background. When the tumor size reached at least 5 mm in diameter, mice were euthanized and tumor tissue was collected.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA extraction from tumor xenografts were performed by using the RNeasy kit and Tissue Lyser (Qiagen) according to the manufacturer’s protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 100ng total RNA.
| | Sample_hyb_protocol | Standard Affymetrix protocol.
| | Sample_scan_protocol | Standard Affymetrix protocol.
| | Sample_data_processing | Gene-level expression signals were obtained by processing of raw data with the RMA procedure using GeneSpring GX (Agilent Technologies).
| | Sample_platform_id | GPL570
| | Sample_contact_name | kyotaro,,HIRASHIMA
| | Sample_contact_laboratory | Division of Molecular Biotherapy
| | Sample_contact_department | Cancer Chemotherapy Center
| | Sample_contact_institute | The JFCR-Cancer Inst.
| | Sample_contact_address | 3-8-31 Ariake
| | Sample_contact_city | Koto-ku
| | Sample_contact_state | Tokyo
| | Sample_contact_zip/postal_code | 135-8550
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1019nnn/GSM1019107/suppl/GSM1019107_mockcre_2.CEL.gz
| | Sample_series_id | GSE41559
| | Sample_data_row_count | 54675
| | |
|
GSM1019108 | GPL570 |
|
PC-3_basalhTERT_ShortTelomeres_mockcre_3
|
Human prostate cancer cell line
|
cell line: prostate cancer cell line PC-3
telomere status: Short
exogenous htert: absent
|
mock/cre+
|
| Sample_geo_accession | GSM1019108
| | Sample_status | Public on May 31 2013
| | Sample_submission_date | Oct 12 2012
| | Sample_last_update_date | May 31 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | no treatment.
| | Sample_growth_protocol_ch1 | 1x10^6 cells were subcutaneously injected into five-week-old female nude mice with a BALB/c genetic background. When the tumor size reached at least 5 mm in diameter, mice were euthanized and tumor tissue was collected.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA extraction from tumor xenografts were performed by using the RNeasy kit and Tissue Lyser (Qiagen) according to the manufacturer’s protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 100ng total RNA.
| | Sample_hyb_protocol | Standard Affymetrix protocol.
| | Sample_scan_protocol | Standard Affymetrix protocol.
| | Sample_data_processing | Gene-level expression signals were obtained by processing of raw data with the RMA procedure using GeneSpring GX (Agilent Technologies).
| | Sample_platform_id | GPL570
| | Sample_contact_name | kyotaro,,HIRASHIMA
| | Sample_contact_laboratory | Division of Molecular Biotherapy
| | Sample_contact_department | Cancer Chemotherapy Center
| | Sample_contact_institute | The JFCR-Cancer Inst.
| | Sample_contact_address | 3-8-31 Ariake
| | Sample_contact_city | Koto-ku
| | Sample_contact_state | Tokyo
| | Sample_contact_zip/postal_code | 135-8550
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1019nnn/GSM1019108/suppl/GSM1019108_mockcre_3.CEL.gz
| | Sample_series_id | GSE41559
| | Sample_data_row_count | 54675
| | |
|
GSM1019109 | GPL570 |
|
PC-3_basalhTERT_ShortTelomeres_mockcre_4
|
Human prostate cancer cell line
|
cell line: prostate cancer cell line PC-3
telomere status: Short
exogenous htert: absent
|
mock/cre+
|
| Sample_geo_accession | GSM1019109
| | Sample_status | Public on May 31 2013
| | Sample_submission_date | Oct 12 2012
| | Sample_last_update_date | May 31 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | no treatment.
| | Sample_growth_protocol_ch1 | 1x10^6 cells were subcutaneously injected into five-week-old female nude mice with a BALB/c genetic background. When the tumor size reached at least 5 mm in diameter, mice were euthanized and tumor tissue was collected.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA extraction from tumor xenografts were performed by using the RNeasy kit and Tissue Lyser (Qiagen) according to the manufacturer’s protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 100ng total RNA.
| | Sample_hyb_protocol | Standard Affymetrix protocol.
| | Sample_scan_protocol | Standard Affymetrix protocol.
| | Sample_data_processing | Gene-level expression signals were obtained by processing of raw data with the RMA procedure using GeneSpring GX (Agilent Technologies).
| | Sample_platform_id | GPL570
| | Sample_contact_name | kyotaro,,HIRASHIMA
| | Sample_contact_laboratory | Division of Molecular Biotherapy
| | Sample_contact_department | Cancer Chemotherapy Center
| | Sample_contact_institute | The JFCR-Cancer Inst.
| | Sample_contact_address | 3-8-31 Ariake
| | Sample_contact_city | Koto-ku
| | Sample_contact_state | Tokyo
| | Sample_contact_zip/postal_code | 135-8550
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1019nnn/GSM1019109/suppl/GSM1019109_mockcre_4.CEL.gz
| | Sample_series_id | GSE41559
| | Sample_data_row_count | 54675
| | |
|
GSM1019110 | GPL570 |
|
PC-3_basalhTERT_LongTelomeres_LhTERTLcre_1
|
Human prostate cancer cell line
|
cell line: prostate cancer cell line PC-3
telomere status: Long
exogenous htert: absent
|
LhTERTL/cre+
|
| Sample_geo_accession | GSM1019110
| | Sample_status | Public on May 31 2013
| | Sample_submission_date | Oct 12 2012
| | Sample_last_update_date | May 31 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | no treatment.
| | Sample_growth_protocol_ch1 | 1x10^6 cells were subcutaneously injected into five-week-old female nude mice with a BALB/c genetic background. When the tumor size reached at least 5 mm in diameter, mice were euthanized and tumor tissue was collected.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA extraction from tumor xenografts were performed by using the RNeasy kit and Tissue Lyser (Qiagen) according to the manufacturer’s protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 100ng total RNA.
| | Sample_hyb_protocol | Standard Affymetrix protocol.
| | Sample_scan_protocol | Standard Affymetrix protocol.
| | Sample_data_processing | Gene-level expression signals were obtained by processing of raw data with the RMA procedure using GeneSpring GX (Agilent Technologies).
| | Sample_platform_id | GPL570
| | Sample_contact_name | kyotaro,,HIRASHIMA
| | Sample_contact_laboratory | Division of Molecular Biotherapy
| | Sample_contact_department | Cancer Chemotherapy Center
| | Sample_contact_institute | The JFCR-Cancer Inst.
| | Sample_contact_address | 3-8-31 Ariake
| | Sample_contact_city | Koto-ku
| | Sample_contact_state | Tokyo
| | Sample_contact_zip/postal_code | 135-8550
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1019nnn/GSM1019110/suppl/GSM1019110_LhTERTLcre_1.CEL.gz
| | Sample_series_id | GSE41559
| | Sample_data_row_count | 54675
| | |
|
GSM1019111 | GPL570 |
|
PC-3_basalhTERT_LongTelomeres_LhTERTLcre_2
|
Human prostate cancer cell line
|
cell line: prostate cancer cell line PC-3
telomere status: Long
exogenous htert: absent
|
LhTERTL/cre+
|
| Sample_geo_accession | GSM1019111
| | Sample_status | Public on May 31 2013
| | Sample_submission_date | Oct 12 2012
| | Sample_last_update_date | May 31 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | no treatment.
| | Sample_growth_protocol_ch1 | 1x10^6 cells were subcutaneously injected into five-week-old female nude mice with a BALB/c genetic background. When the tumor size reached at least 5 mm in diameter, mice were euthanized and tumor tissue was collected.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA extraction from tumor xenografts were performed by using the RNeasy kit and Tissue Lyser (Qiagen) according to the manufacturer’s protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 100ng total RNA.
| | Sample_hyb_protocol | Standard Affymetrix protocol.
| | Sample_scan_protocol | Standard Affymetrix protocol.
| | Sample_data_processing | Gene-level expression signals were obtained by processing of raw data with the RMA procedure using GeneSpring GX (Agilent Technologies).
| | Sample_platform_id | GPL570
| | Sample_contact_name | kyotaro,,HIRASHIMA
| | Sample_contact_laboratory | Division of Molecular Biotherapy
| | Sample_contact_department | Cancer Chemotherapy Center
| | Sample_contact_institute | The JFCR-Cancer Inst.
| | Sample_contact_address | 3-8-31 Ariake
| | Sample_contact_city | Koto-ku
| | Sample_contact_state | Tokyo
| | Sample_contact_zip/postal_code | 135-8550
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1019nnn/GSM1019111/suppl/GSM1019111_LhTERTLcre_2.CEL.gz
| | Sample_series_id | GSE41559
| | Sample_data_row_count | 54675
| | |
|
GSM1019112 | GPL570 |
|
PC-3_basalhTERT_LongTelomeres_LhTERTLcre_3
|
Human prostate cancer cell line
|
cell line: prostate cancer cell line PC-3
telomere status: Long
exogenous htert: absent
|
LhTERTL/cre+
|
| Sample_geo_accession | GSM1019112
| | Sample_status | Public on May 31 2013
| | Sample_submission_date | Oct 12 2012
| | Sample_last_update_date | May 31 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | no treatment.
| | Sample_growth_protocol_ch1 | 1x10^6 cells were subcutaneously injected into five-week-old female nude mice with a BALB/c genetic background. When the tumor size reached at least 5 mm in diameter, mice were euthanized and tumor tissue was collected.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA extraction from tumor xenografts were performed by using the RNeasy kit and Tissue Lyser (Qiagen) according to the manufacturer’s protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 100ng total RNA.
| | Sample_hyb_protocol | Standard Affymetrix protocol.
| | Sample_scan_protocol | Standard Affymetrix protocol.
| | Sample_data_processing | Gene-level expression signals were obtained by processing of raw data with the RMA procedure using GeneSpring GX (Agilent Technologies).
| | Sample_platform_id | GPL570
| | Sample_contact_name | kyotaro,,HIRASHIMA
| | Sample_contact_laboratory | Division of Molecular Biotherapy
| | Sample_contact_department | Cancer Chemotherapy Center
| | Sample_contact_institute | The JFCR-Cancer Inst.
| | Sample_contact_address | 3-8-31 Ariake
| | Sample_contact_city | Koto-ku
| | Sample_contact_state | Tokyo
| | Sample_contact_zip/postal_code | 135-8550
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1019nnn/GSM1019112/suppl/GSM1019112_LhTERTLcre_3.CEL.gz
| | Sample_series_id | GSE41559
| | Sample_data_row_count | 54675
| | |
|
GSM1019113 | GPL570 |
|
PC-3_basalhTERT_LongTelomeres_LhTERTLcre_4
|
Human prostate cancer cell line
|
cell line: prostate cancer cell line PC-3
telomere status: Long
exogenous htert: absent
|
LhTERTL/cre+
|
| Sample_geo_accession | GSM1019113
| | Sample_status | Public on May 31 2013
| | Sample_submission_date | Oct 12 2012
| | Sample_last_update_date | May 31 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | no treatment.
| | Sample_growth_protocol_ch1 | 1x10^6 cells were subcutaneously injected into five-week-old female nude mice with a BALB/c genetic background. When the tumor size reached at least 5 mm in diameter, mice were euthanized and tumor tissue was collected.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA extraction from tumor xenografts were performed by using the RNeasy kit and Tissue Lyser (Qiagen) according to the manufacturer’s protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 100ng total RNA.
| | Sample_hyb_protocol | Standard Affymetrix protocol.
| | Sample_scan_protocol | Standard Affymetrix protocol.
| | Sample_data_processing | Gene-level expression signals were obtained by processing of raw data with the RMA procedure using GeneSpring GX (Agilent Technologies).
| | Sample_platform_id | GPL570
| | Sample_contact_name | kyotaro,,HIRASHIMA
| | Sample_contact_laboratory | Division of Molecular Biotherapy
| | Sample_contact_department | Cancer Chemotherapy Center
| | Sample_contact_institute | The JFCR-Cancer Inst.
| | Sample_contact_address | 3-8-31 Ariake
| | Sample_contact_city | Koto-ku
| | Sample_contact_state | Tokyo
| | Sample_contact_zip/postal_code | 135-8550
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1019nnn/GSM1019113/suppl/GSM1019113_LhTERTLcre_4.CEL.gz
| | Sample_series_id | GSE41559
| | Sample_data_row_count | 54675
| | |
|
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