Search results for the GEO ID: GSE41599  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM1019930 | GPL96 |
|
Subject C1, E cells
|
Bone marrow
|
subject id: C1
Sex: Female
age: between 25 and 40 years old
cell type: erythroid E, CD34+, CD71 hi, CD45RA−
disease status: Control
|
|
| Sample_geo_accession | GSM1019930
| | Sample_status | Public on Oct 16 2012
| | Sample_submission_date | Oct 15 2012
| | Sample_last_update_date | Oct 16 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated from FACS sorted (described in accompanying PMID 16741228) bone marrow cells from DBA patients and control individuals using an RNA isolation kit (Qiagen) according to the manufacturer's instructions. The mRNA fractions were reverse transcribed into cDNA and amplified by One-step reverse transcription-polymerase chain reaction (RT-PCR) kit (Qiagen) using primers that flanked the beginning and the end of the coding region.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol.
| | Sample_hyb_protocol | Standard Affymetrix protocol.
| | Sample_scan_protocol | Standard Affymetrix protocol.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Alvin,T.,Kho
| | Sample_contact_email | alvin_kho@hms.harvard.edu
| | Sample_contact_phone | 617-355-6393
| | Sample_contact_department | Informatics Program
| | Sample_contact_institute | Boston Children's Hospital
| | Sample_contact_address | 320 Longwood Avenue
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1019nnn/GSM1019930/suppl/GSM1019930_NBM4-E.CEL.gz
| | Sample_series_id | GSE41599
| | Sample_data_row_count | 22283
| | |
|
GSM1019931 | GPL96 |
|
Subject C1, M cells
|
Bone marrow
|
subject id: C1
Sex: Female
age: between 25 and 40 years old
cell type: myeloid M, CD34+, CD71 low, CD45RA+
disease status: Control
|
|
| Sample_geo_accession | GSM1019931
| | Sample_status | Public on Oct 16 2012
| | Sample_submission_date | Oct 15 2012
| | Sample_last_update_date | Oct 16 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated from FACS sorted (described in accompanying PMID 16741228) bone marrow cells from DBA patients and control individuals using an RNA isolation kit (Qiagen) according to the manufacturer's instructions. The mRNA fractions were reverse transcribed into cDNA and amplified by One-step reverse transcription-polymerase chain reaction (RT-PCR) kit (Qiagen) using primers that flanked the beginning and the end of the coding region.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol.
| | Sample_hyb_protocol | Standard Affymetrix protocol.
| | Sample_scan_protocol | Standard Affymetrix protocol.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Alvin,T.,Kho
| | Sample_contact_email | alvin_kho@hms.harvard.edu
| | Sample_contact_phone | 617-355-6393
| | Sample_contact_department | Informatics Program
| | Sample_contact_institute | Boston Children's Hospital
| | Sample_contact_address | 320 Longwood Avenue
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1019nnn/GSM1019931/suppl/GSM1019931_NBM4-L.CEL.gz
| | Sample_series_id | GSE41599
| | Sample_data_row_count | 22283
| | |
|
GSM1019932 | GPL96 |
|
Subject C1, P cells
|
Bone marrow
|
subject id: C1
Sex: Female
age: between 25 and 40 years old
cell type: multipotential P, CD34+, CD71−, CD45RA−
disease status: Control
|
|
| Sample_geo_accession | GSM1019932
| | Sample_status | Public on Oct 16 2012
| | Sample_submission_date | Oct 15 2012
| | Sample_last_update_date | Oct 16 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated from FACS sorted (described in accompanying PMID 16741228) bone marrow cells from DBA patients and control individuals using an RNA isolation kit (Qiagen) according to the manufacturer's instructions. The mRNA fractions were reverse transcribed into cDNA and amplified by One-step reverse transcription-polymerase chain reaction (RT-PCR) kit (Qiagen) using primers that flanked the beginning and the end of the coding region.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol.
| | Sample_hyb_protocol | Standard Affymetrix protocol.
| | Sample_scan_protocol | Standard Affymetrix protocol.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Alvin,T.,Kho
| | Sample_contact_email | alvin_kho@hms.harvard.edu
| | Sample_contact_phone | 617-355-6393
| | Sample_contact_department | Informatics Program
| | Sample_contact_institute | Boston Children's Hospital
| | Sample_contact_address | 320 Longwood Avenue
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1019nnn/GSM1019932/suppl/GSM1019932_NBM4-P.CEL.gz
| | Sample_series_id | GSE41599
| | Sample_data_row_count | 22283
| | |
|
GSM1019933 | GPL96 |
|
Subject C2, E cells
|
Bone marrow
|
subject id: C2
Sex: Male
age: between 25 and 40 years old
cell type: erythroid E, CD34+, CD71 hi, CD45RA−
disease status: Control
|
|
| Sample_geo_accession | GSM1019933
| | Sample_status | Public on Oct 16 2012
| | Sample_submission_date | Oct 15 2012
| | Sample_last_update_date | Oct 16 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated from FACS sorted (described in accompanying PMID 16741228) bone marrow cells from DBA patients and control individuals using an RNA isolation kit (Qiagen) according to the manufacturer's instructions. The mRNA fractions were reverse transcribed into cDNA and amplified by One-step reverse transcription-polymerase chain reaction (RT-PCR) kit (Qiagen) using primers that flanked the beginning and the end of the coding region.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol.
| | Sample_hyb_protocol | Standard Affymetrix protocol.
| | Sample_scan_protocol | Standard Affymetrix protocol.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Alvin,T.,Kho
| | Sample_contact_email | alvin_kho@hms.harvard.edu
| | Sample_contact_phone | 617-355-6393
| | Sample_contact_department | Informatics Program
| | Sample_contact_institute | Boston Children's Hospital
| | Sample_contact_address | 320 Longwood Avenue
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1019nnn/GSM1019933/suppl/GSM1019933_NBM5-E.CEL.gz
| | Sample_series_id | GSE41599
| | Sample_data_row_count | 22283
| | |
|
GSM1019934 | GPL96 |
|
Subject C2, M cells
|
Bone marrow
|
subject id: C2
Sex: Male
age: between 25 and 40 years old
cell type: myeloid M, CD34+, CD71 low, CD45RA+
disease status: Control
|
|
| Sample_geo_accession | GSM1019934
| | Sample_status | Public on Oct 16 2012
| | Sample_submission_date | Oct 15 2012
| | Sample_last_update_date | Oct 16 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated from FACS sorted (described in accompanying PMID 16741228) bone marrow cells from DBA patients and control individuals using an RNA isolation kit (Qiagen) according to the manufacturer's instructions. The mRNA fractions were reverse transcribed into cDNA and amplified by One-step reverse transcription-polymerase chain reaction (RT-PCR) kit (Qiagen) using primers that flanked the beginning and the end of the coding region.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol.
| | Sample_hyb_protocol | Standard Affymetrix protocol.
| | Sample_scan_protocol | Standard Affymetrix protocol.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Alvin,T.,Kho
| | Sample_contact_email | alvin_kho@hms.harvard.edu
| | Sample_contact_phone | 617-355-6393
| | Sample_contact_department | Informatics Program
| | Sample_contact_institute | Boston Children's Hospital
| | Sample_contact_address | 320 Longwood Avenue
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1019nnn/GSM1019934/suppl/GSM1019934_NBM5-L.CEL.gz
| | Sample_series_id | GSE41599
| | Sample_data_row_count | 22283
| | |
|
GSM1019935 | GPL96 |
|
Subject C2, P cells
|
Bone marrow
|
subject id: C2
Sex: Male
age: between 25 and 40 years old
cell type: multipotential P, CD34+, CD71−, CD45RA−
disease status: Control
|
|
| Sample_geo_accession | GSM1019935
| | Sample_status | Public on Oct 16 2012
| | Sample_submission_date | Oct 15 2012
| | Sample_last_update_date | Oct 16 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated from FACS sorted (described in accompanying PMID 16741228) bone marrow cells from DBA patients and control individuals using an RNA isolation kit (Qiagen) according to the manufacturer's instructions. The mRNA fractions were reverse transcribed into cDNA and amplified by One-step reverse transcription-polymerase chain reaction (RT-PCR) kit (Qiagen) using primers that flanked the beginning and the end of the coding region.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol.
| | Sample_hyb_protocol | Standard Affymetrix protocol.
| | Sample_scan_protocol | Standard Affymetrix protocol.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Alvin,T.,Kho
| | Sample_contact_email | alvin_kho@hms.harvard.edu
| | Sample_contact_phone | 617-355-6393
| | Sample_contact_department | Informatics Program
| | Sample_contact_institute | Boston Children's Hospital
| | Sample_contact_address | 320 Longwood Avenue
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1019nnn/GSM1019935/suppl/GSM1019935_NBM5-P.CEL.gz
| | Sample_series_id | GSE41599
| | Sample_data_row_count | 22283
| | |
|
GSM1019936 | GPL96 |
|
Subject C3, E cells
|
Bone marrow
|
subject id: C3
Sex: Female
age: between 25 and 40 years old
cell type: erythroid E, CD34+, CD71 hi, CD45RA−
disease status: Control
|
|
| Sample_geo_accession | GSM1019936
| | Sample_status | Public on Oct 16 2012
| | Sample_submission_date | Oct 15 2012
| | Sample_last_update_date | Oct 16 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated from FACS sorted (described in accompanying PMID 16741228) bone marrow cells from DBA patients and control individuals using an RNA isolation kit (Qiagen) according to the manufacturer's instructions. The mRNA fractions were reverse transcribed into cDNA and amplified by One-step reverse transcription-polymerase chain reaction (RT-PCR) kit (Qiagen) using primers that flanked the beginning and the end of the coding region.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol.
| | Sample_hyb_protocol | Standard Affymetrix protocol.
| | Sample_scan_protocol | Standard Affymetrix protocol.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Alvin,T.,Kho
| | Sample_contact_email | alvin_kho@hms.harvard.edu
| | Sample_contact_phone | 617-355-6393
| | Sample_contact_department | Informatics Program
| | Sample_contact_institute | Boston Children's Hospital
| | Sample_contact_address | 320 Longwood Avenue
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1019nnn/GSM1019936/suppl/GSM1019936_NBM6-E.CEL.gz
| | Sample_series_id | GSE41599
| | Sample_data_row_count | 22283
| | |
|
GSM1019937 | GPL96 |
|
Subject C3, M cells
|
Bone marrow
|
subject id: C3
Sex: Female
age: between 25 and 40 years old
cell type: myeloid M, CD34+, CD71 low, CD45RA+
disease status: Control
|
|
| Sample_geo_accession | GSM1019937
| | Sample_status | Public on Oct 16 2012
| | Sample_submission_date | Oct 15 2012
| | Sample_last_update_date | Oct 16 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated from FACS sorted (described in accompanying PMID 16741228) bone marrow cells from DBA patients and control individuals using an RNA isolation kit (Qiagen) according to the manufacturer's instructions. The mRNA fractions were reverse transcribed into cDNA and amplified by One-step reverse transcription-polymerase chain reaction (RT-PCR) kit (Qiagen) using primers that flanked the beginning and the end of the coding region.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol.
| | Sample_hyb_protocol | Standard Affymetrix protocol.
| | Sample_scan_protocol | Standard Affymetrix protocol.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Alvin,T.,Kho
| | Sample_contact_email | alvin_kho@hms.harvard.edu
| | Sample_contact_phone | 617-355-6393
| | Sample_contact_department | Informatics Program
| | Sample_contact_institute | Boston Children's Hospital
| | Sample_contact_address | 320 Longwood Avenue
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1019nnn/GSM1019937/suppl/GSM1019937_NBM6-L.CEL.gz
| | Sample_series_id | GSE41599
| | Sample_data_row_count | 22283
| | |
|
GSM1019938 | GPL96 |
|
Subject C3, P cells
|
Bone marrow
|
subject id: C3
Sex: Female
age: between 25 and 40 years old
cell type: multipotential P, CD34+, CD71−, CD45RA−
disease status: Control
|
|
| Sample_geo_accession | GSM1019938
| | Sample_status | Public on Oct 16 2012
| | Sample_submission_date | Oct 15 2012
| | Sample_last_update_date | Oct 16 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated from FACS sorted (described in accompanying PMID 16741228) bone marrow cells from DBA patients and control individuals using an RNA isolation kit (Qiagen) according to the manufacturer's instructions. The mRNA fractions were reverse transcribed into cDNA and amplified by One-step reverse transcription-polymerase chain reaction (RT-PCR) kit (Qiagen) using primers that flanked the beginning and the end of the coding region.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol.
| | Sample_hyb_protocol | Standard Affymetrix protocol.
| | Sample_scan_protocol | Standard Affymetrix protocol.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Alvin,T.,Kho
| | Sample_contact_email | alvin_kho@hms.harvard.edu
| | Sample_contact_phone | 617-355-6393
| | Sample_contact_department | Informatics Program
| | Sample_contact_institute | Boston Children's Hospital
| | Sample_contact_address | 320 Longwood Avenue
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1019nnn/GSM1019938/suppl/GSM1019938_NBM6-P.CEL.gz
| | Sample_series_id | GSE41599
| | Sample_data_row_count | 22283
| | |
|
GSM1019939 | GPL96 |
|
Subject C4, E cells
|
Bone marrow
|
subject id: C4
Sex: Female
age: between 25 and 40 years old
cell type: erythroid E, CD34+, CD71 hi, CD45RA−
disease status: Control
|
|
| Sample_geo_accession | GSM1019939
| | Sample_status | Public on Oct 16 2012
| | Sample_submission_date | Oct 15 2012
| | Sample_last_update_date | Oct 16 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated from FACS sorted (described in accompanying PMID 16741228) bone marrow cells from DBA patients and control individuals using an RNA isolation kit (Qiagen) according to the manufacturer's instructions. The mRNA fractions were reverse transcribed into cDNA and amplified by One-step reverse transcription-polymerase chain reaction (RT-PCR) kit (Qiagen) using primers that flanked the beginning and the end of the coding region.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol.
| | Sample_hyb_protocol | Standard Affymetrix protocol.
| | Sample_scan_protocol | Standard Affymetrix protocol.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Alvin,T.,Kho
| | Sample_contact_email | alvin_kho@hms.harvard.edu
| | Sample_contact_phone | 617-355-6393
| | Sample_contact_department | Informatics Program
| | Sample_contact_institute | Boston Children's Hospital
| | Sample_contact_address | 320 Longwood Avenue
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1019nnn/GSM1019939/suppl/GSM1019939_NBM7E.CEL.gz
| | Sample_series_id | GSE41599
| | Sample_data_row_count | 22283
| | |
|
GSM1019940 | GPL96 |
|
Subject C4, M cells
|
Bone marrow
|
subject id: C4
Sex: Female
age: between 25 and 40 years old
cell type: myeloid M, CD34+, CD71 low, CD45RA+
disease status: Control
|
|
| Sample_geo_accession | GSM1019940
| | Sample_status | Public on Oct 16 2012
| | Sample_submission_date | Oct 15 2012
| | Sample_last_update_date | Oct 16 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated from FACS sorted (described in accompanying PMID 16741228) bone marrow cells from DBA patients and control individuals using an RNA isolation kit (Qiagen) according to the manufacturer's instructions. The mRNA fractions were reverse transcribed into cDNA and amplified by One-step reverse transcription-polymerase chain reaction (RT-PCR) kit (Qiagen) using primers that flanked the beginning and the end of the coding region.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol.
| | Sample_hyb_protocol | Standard Affymetrix protocol.
| | Sample_scan_protocol | Standard Affymetrix protocol.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Alvin,T.,Kho
| | Sample_contact_email | alvin_kho@hms.harvard.edu
| | Sample_contact_phone | 617-355-6393
| | Sample_contact_department | Informatics Program
| | Sample_contact_institute | Boston Children's Hospital
| | Sample_contact_address | 320 Longwood Avenue
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1019nnn/GSM1019940/suppl/GSM1019940_NBM7L.CEL.gz
| | Sample_series_id | GSE41599
| | Sample_data_row_count | 22283
| | |
|
GSM1019941 | GPL96 |
|
Subject C4, P cells
|
Bone marrow
|
subject id: C4
Sex: Female
age: between 25 and 40 years old
cell type: multipotential P, CD34+, CD71−, CD45RA−
disease status: Control
|
|
| Sample_geo_accession | GSM1019941
| | Sample_status | Public on Oct 16 2012
| | Sample_submission_date | Oct 15 2012
| | Sample_last_update_date | Oct 16 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated from FACS sorted (described in accompanying PMID 16741228) bone marrow cells from DBA patients and control individuals using an RNA isolation kit (Qiagen) according to the manufacturer's instructions. The mRNA fractions were reverse transcribed into cDNA and amplified by One-step reverse transcription-polymerase chain reaction (RT-PCR) kit (Qiagen) using primers that flanked the beginning and the end of the coding region.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol.
| | Sample_hyb_protocol | Standard Affymetrix protocol.
| | Sample_scan_protocol | Standard Affymetrix protocol.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Alvin,T.,Kho
| | Sample_contact_email | alvin_kho@hms.harvard.edu
| | Sample_contact_phone | 617-355-6393
| | Sample_contact_department | Informatics Program
| | Sample_contact_institute | Boston Children's Hospital
| | Sample_contact_address | 320 Longwood Avenue
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1019nnn/GSM1019941/suppl/GSM1019941_NBM7P.CEL.gz
| | Sample_series_id | GSE41599
| | Sample_data_row_count | 22283
| | |
|
GSM1019942 | GPL96 |
|
Subject C5, E cells
|
Bone marrow
|
subject id: C5
Sex: Female
age: between 25 and 40 years old
cell type: erythroid E, CD34+, CD71 hi, CD45RA−
disease status: Control
|
|
| Sample_geo_accession | GSM1019942
| | Sample_status | Public on Oct 16 2012
| | Sample_submission_date | Oct 15 2012
| | Sample_last_update_date | Oct 16 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated from FACS sorted (described in accompanying PMID 16741228) bone marrow cells from DBA patients and control individuals using an RNA isolation kit (Qiagen) according to the manufacturer's instructions. The mRNA fractions were reverse transcribed into cDNA and amplified by One-step reverse transcription-polymerase chain reaction (RT-PCR) kit (Qiagen) using primers that flanked the beginning and the end of the coding region.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol.
| | Sample_hyb_protocol | Standard Affymetrix protocol.
| | Sample_scan_protocol | Standard Affymetrix protocol.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Alvin,T.,Kho
| | Sample_contact_email | alvin_kho@hms.harvard.edu
| | Sample_contact_phone | 617-355-6393
| | Sample_contact_department | Informatics Program
| | Sample_contact_institute | Boston Children's Hospital
| | Sample_contact_address | 320 Longwood Avenue
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1019nnn/GSM1019942/suppl/GSM1019942_2NBM8-E.CEL.gz
| | Sample_series_id | GSE41599
| | Sample_data_row_count | 22283
| | |
|
GSM1019943 | GPL96 |
|
Subject C5, M cells
|
Bone marrow
|
subject id: C5
Sex: Female
age: between 25 and 40 years old
cell type: myeloid M, CD34+, CD71 low, CD45RA+
disease status: Control
|
|
| Sample_geo_accession | GSM1019943
| | Sample_status | Public on Oct 16 2012
| | Sample_submission_date | Oct 15 2012
| | Sample_last_update_date | Oct 16 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated from FACS sorted (described in accompanying PMID 16741228) bone marrow cells from DBA patients and control individuals using an RNA isolation kit (Qiagen) according to the manufacturer's instructions. The mRNA fractions were reverse transcribed into cDNA and amplified by One-step reverse transcription-polymerase chain reaction (RT-PCR) kit (Qiagen) using primers that flanked the beginning and the end of the coding region.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol.
| | Sample_hyb_protocol | Standard Affymetrix protocol.
| | Sample_scan_protocol | Standard Affymetrix protocol.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Alvin,T.,Kho
| | Sample_contact_email | alvin_kho@hms.harvard.edu
| | Sample_contact_phone | 617-355-6393
| | Sample_contact_department | Informatics Program
| | Sample_contact_institute | Boston Children's Hospital
| | Sample_contact_address | 320 Longwood Avenue
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1019nnn/GSM1019943/suppl/GSM1019943_2NBM8-L.CEL.gz
| | Sample_series_id | GSE41599
| | Sample_data_row_count | 22283
| | |
|
GSM1019944 | GPL96 |
|
Subject C5, P cells
|
Bone marrow
|
subject id: C5
Sex: Female
age: between 25 and 40 years old
cell type: multipotential P, CD34+, CD71−, CD45RA−
disease status: Control
|
|
| Sample_geo_accession | GSM1019944
| | Sample_status | Public on Oct 16 2012
| | Sample_submission_date | Oct 15 2012
| | Sample_last_update_date | Oct 16 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated from FACS sorted (described in accompanying PMID 16741228) bone marrow cells from DBA patients and control individuals using an RNA isolation kit (Qiagen) according to the manufacturer's instructions. The mRNA fractions were reverse transcribed into cDNA and amplified by One-step reverse transcription-polymerase chain reaction (RT-PCR) kit (Qiagen) using primers that flanked the beginning and the end of the coding region.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol.
| | Sample_hyb_protocol | Standard Affymetrix protocol.
| | Sample_scan_protocol | Standard Affymetrix protocol.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Alvin,T.,Kho
| | Sample_contact_email | alvin_kho@hms.harvard.edu
| | Sample_contact_phone | 617-355-6393
| | Sample_contact_department | Informatics Program
| | Sample_contact_institute | Boston Children's Hospital
| | Sample_contact_address | 320 Longwood Avenue
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1019nnn/GSM1019944/suppl/GSM1019944_2NBM8-P.CEL.gz
| | Sample_series_id | GSE41599
| | Sample_data_row_count | 22283
| | |
|
GSM1019945 | GPL96 |
|
Subject C6, E cells
|
Bone marrow
|
subject id: C6
Sex: Female
age: between 25 and 40 years old
cell type: erythroid E, CD34+, CD71 hi, CD45RA−
disease status: Control
|
|
| Sample_geo_accession | GSM1019945
| | Sample_status | Public on Oct 16 2012
| | Sample_submission_date | Oct 15 2012
| | Sample_last_update_date | Oct 16 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated from FACS sorted (described in accompanying PMID 16741228) bone marrow cells from DBA patients and control individuals using an RNA isolation kit (Qiagen) according to the manufacturer's instructions. The mRNA fractions were reverse transcribed into cDNA and amplified by One-step reverse transcription-polymerase chain reaction (RT-PCR) kit (Qiagen) using primers that flanked the beginning and the end of the coding region.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol.
| | Sample_hyb_protocol | Standard Affymetrix protocol.
| | Sample_scan_protocol | Standard Affymetrix protocol.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Alvin,T.,Kho
| | Sample_contact_email | alvin_kho@hms.harvard.edu
| | Sample_contact_phone | 617-355-6393
| | Sample_contact_department | Informatics Program
| | Sample_contact_institute | Boston Children's Hospital
| | Sample_contact_address | 320 Longwood Avenue
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1019nnn/GSM1019945/suppl/GSM1019945_2NBM19-E.CEL.gz
| | Sample_series_id | GSE41599
| | Sample_data_row_count | 22283
| | |
|
GSM1019946 | GPL96 |
|
Subject C6, M cells
|
Bone marrow
|
subject id: C6
Sex: Female
age: between 25 and 40 years old
cell type: myeloid M, CD34+, CD71 low, CD45RA+
disease status: Control
|
|
| Sample_geo_accession | GSM1019946
| | Sample_status | Public on Oct 16 2012
| | Sample_submission_date | Oct 15 2012
| | Sample_last_update_date | Oct 16 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated from FACS sorted (described in accompanying PMID 16741228) bone marrow cells from DBA patients and control individuals using an RNA isolation kit (Qiagen) according to the manufacturer's instructions. The mRNA fractions were reverse transcribed into cDNA and amplified by One-step reverse transcription-polymerase chain reaction (RT-PCR) kit (Qiagen) using primers that flanked the beginning and the end of the coding region.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol.
| | Sample_hyb_protocol | Standard Affymetrix protocol.
| | Sample_scan_protocol | Standard Affymetrix protocol.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Alvin,T.,Kho
| | Sample_contact_email | alvin_kho@hms.harvard.edu
| | Sample_contact_phone | 617-355-6393
| | Sample_contact_department | Informatics Program
| | Sample_contact_institute | Boston Children's Hospital
| | Sample_contact_address | 320 Longwood Avenue
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1019nnn/GSM1019946/suppl/GSM1019946_2NBM19-L.CEL.gz
| | Sample_series_id | GSE41599
| | Sample_data_row_count | 22283
| | |
|
GSM1019947 | GPL96 |
|
Subject C6, P cells
|
Bone marrow
|
subject id: C6
Sex: Female
age: between 25 and 40 years old
cell type: multipotential P, CD34+, CD71−, CD45RA−
disease status: Control
|
|
| Sample_geo_accession | GSM1019947
| | Sample_status | Public on Oct 16 2012
| | Sample_submission_date | Oct 15 2012
| | Sample_last_update_date | Oct 16 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated from FACS sorted (described in accompanying PMID 16741228) bone marrow cells from DBA patients and control individuals using an RNA isolation kit (Qiagen) according to the manufacturer's instructions. The mRNA fractions were reverse transcribed into cDNA and amplified by One-step reverse transcription-polymerase chain reaction (RT-PCR) kit (Qiagen) using primers that flanked the beginning and the end of the coding region.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol.
| | Sample_hyb_protocol | Standard Affymetrix protocol.
| | Sample_scan_protocol | Standard Affymetrix protocol.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Alvin,T.,Kho
| | Sample_contact_email | alvin_kho@hms.harvard.edu
| | Sample_contact_phone | 617-355-6393
| | Sample_contact_department | Informatics Program
| | Sample_contact_institute | Boston Children's Hospital
| | Sample_contact_address | 320 Longwood Avenue
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1019nnn/GSM1019947/suppl/GSM1019947_2NBM19-P.CEL.gz
| | Sample_series_id | GSE41599
| | Sample_data_row_count | 22283
| | |
|
GSM1019948 | GPL96 |
|
Subject D1, E cells
|
Bone marrow
|
subject id: D1
Sex: Female
age: 46 year old
cell type: erythroid E, CD34+, CD71 hi, CD45RA−
disease status: Diamond Blackfan anemia
|
|
| Sample_geo_accession | GSM1019948
| | Sample_status | Public on Oct 16 2012
| | Sample_submission_date | Oct 15 2012
| | Sample_last_update_date | Oct 16 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated from FACS sorted (described in accompanying PMID 16741228) bone marrow cells from DBA patients and control individuals using an RNA isolation kit (Qiagen) according to the manufacturer's instructions. The mRNA fractions were reverse transcribed into cDNA and amplified by One-step reverse transcription-polymerase chain reaction (RT-PCR) kit (Qiagen) using primers that flanked the beginning and the end of the coding region.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol.
| | Sample_hyb_protocol | Standard Affymetrix protocol.
| | Sample_scan_protocol | Standard Affymetrix protocol.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Alvin,T.,Kho
| | Sample_contact_email | alvin_kho@hms.harvard.edu
| | Sample_contact_phone | 617-355-6393
| | Sample_contact_department | Informatics Program
| | Sample_contact_institute | Boston Children's Hospital
| | Sample_contact_address | 320 Longwood Avenue
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1019nnn/GSM1019948/suppl/GSM1019948_NT2-E.CEL.gz
| | Sample_series_id | GSE41599
| | Sample_data_row_count | 22283
| | |
|
GSM1019949 | GPL96 |
|
Subject D1, M cells
|
Bone marrow
|
subject id: D1
Sex: Female
age: 46 year old
cell type: myeloid M, CD34+, CD71 low, CD45RA+
disease status: Diamond Blackfan anemia
|
|
| Sample_geo_accession | GSM1019949
| | Sample_status | Public on Oct 16 2012
| | Sample_submission_date | Oct 15 2012
| | Sample_last_update_date | Oct 16 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated from FACS sorted (described in accompanying PMID 16741228) bone marrow cells from DBA patients and control individuals using an RNA isolation kit (Qiagen) according to the manufacturer's instructions. The mRNA fractions were reverse transcribed into cDNA and amplified by One-step reverse transcription-polymerase chain reaction (RT-PCR) kit (Qiagen) using primers that flanked the beginning and the end of the coding region.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol.
| | Sample_hyb_protocol | Standard Affymetrix protocol.
| | Sample_scan_protocol | Standard Affymetrix protocol.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Alvin,T.,Kho
| | Sample_contact_email | alvin_kho@hms.harvard.edu
| | Sample_contact_phone | 617-355-6393
| | Sample_contact_department | Informatics Program
| | Sample_contact_institute | Boston Children's Hospital
| | Sample_contact_address | 320 Longwood Avenue
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1019nnn/GSM1019949/suppl/GSM1019949_NT2-L.CEL.gz
| | Sample_series_id | GSE41599
| | Sample_data_row_count | 22283
| | |
|
GSM1019950 | GPL96 |
|
Subject D1, P cells
|
Bone marrow
|
subject id: D1
Sex: Female
age: 46 year old
cell type: multipotential P, CD34+, CD71−, CD45RA−
disease status: Diamond Blackfan anemia
|
|
| Sample_geo_accession | GSM1019950
| | Sample_status | Public on Oct 16 2012
| | Sample_submission_date | Oct 15 2012
| | Sample_last_update_date | Oct 16 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated from FACS sorted (described in accompanying PMID 16741228) bone marrow cells from DBA patients and control individuals using an RNA isolation kit (Qiagen) according to the manufacturer's instructions. The mRNA fractions were reverse transcribed into cDNA and amplified by One-step reverse transcription-polymerase chain reaction (RT-PCR) kit (Qiagen) using primers that flanked the beginning and the end of the coding region.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol.
| | Sample_hyb_protocol | Standard Affymetrix protocol.
| | Sample_scan_protocol | Standard Affymetrix protocol.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Alvin,T.,Kho
| | Sample_contact_email | alvin_kho@hms.harvard.edu
| | Sample_contact_phone | 617-355-6393
| | Sample_contact_department | Informatics Program
| | Sample_contact_institute | Boston Children's Hospital
| | Sample_contact_address | 320 Longwood Avenue
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1019nnn/GSM1019950/suppl/GSM1019950_NFP-2.CEL.gz
| | Sample_series_id | GSE41599
| | Sample_data_row_count | 22283
| | |
|
GSM1019951 | GPL96 |
|
Subject D2, E cells
|
Bone marrow
|
subject id: D2
Sex: Male
age: 30 year old
cell type: erythroid E, CD34+, CD71 hi, CD45RA−
disease status: Diamond Blackfan anemia
|
|
| Sample_geo_accession | GSM1019951
| | Sample_status | Public on Oct 16 2012
| | Sample_submission_date | Oct 15 2012
| | Sample_last_update_date | Oct 16 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated from FACS sorted (described in accompanying PMID 16741228) bone marrow cells from DBA patients and control individuals using an RNA isolation kit (Qiagen) according to the manufacturer's instructions. The mRNA fractions were reverse transcribed into cDNA and amplified by One-step reverse transcription-polymerase chain reaction (RT-PCR) kit (Qiagen) using primers that flanked the beginning and the end of the coding region.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol.
| | Sample_hyb_protocol | Standard Affymetrix protocol.
| | Sample_scan_protocol | Standard Affymetrix protocol.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Alvin,T.,Kho
| | Sample_contact_email | alvin_kho@hms.harvard.edu
| | Sample_contact_phone | 617-355-6393
| | Sample_contact_department | Informatics Program
| | Sample_contact_institute | Boston Children's Hospital
| | Sample_contact_address | 320 Longwood Avenue
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1019nnn/GSM1019951/suppl/GSM1019951_ZJ-E.CEL.gz
| | Sample_series_id | GSE41599
| | Sample_data_row_count | 22283
| | |
|
GSM1019952 | GPL96 |
|
Subject D2, M cells
|
Bone marrow
|
subject id: D2
Sex: Male
age: 30 year old
cell type: myeloid M, CD34+, CD71 low, CD45RA+
disease status: Diamond Blackfan anemia
|
|
| Sample_geo_accession | GSM1019952
| | Sample_status | Public on Oct 16 2012
| | Sample_submission_date | Oct 15 2012
| | Sample_last_update_date | Oct 16 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated from FACS sorted (described in accompanying PMID 16741228) bone marrow cells from DBA patients and control individuals using an RNA isolation kit (Qiagen) according to the manufacturer's instructions. The mRNA fractions were reverse transcribed into cDNA and amplified by One-step reverse transcription-polymerase chain reaction (RT-PCR) kit (Qiagen) using primers that flanked the beginning and the end of the coding region.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol.
| | Sample_hyb_protocol | Standard Affymetrix protocol.
| | Sample_scan_protocol | Standard Affymetrix protocol.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Alvin,T.,Kho
| | Sample_contact_email | alvin_kho@hms.harvard.edu
| | Sample_contact_phone | 617-355-6393
| | Sample_contact_department | Informatics Program
| | Sample_contact_institute | Boston Children's Hospital
| | Sample_contact_address | 320 Longwood Avenue
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1019nnn/GSM1019952/suppl/GSM1019952_ZJ-L-2.CEL.gz
| | Sample_series_id | GSE41599
| | Sample_data_row_count | 22283
| | |
|
GSM1019953 | GPL96 |
|
Subject D2, P cells
|
Bone marrow
|
subject id: D2
Sex: Male
age: 30 year old
cell type: multipotential P, CD34+, CD71−, CD45RA−
disease status: Diamond Blackfan anemia
|
|
| Sample_geo_accession | GSM1019953
| | Sample_status | Public on Oct 16 2012
| | Sample_submission_date | Oct 15 2012
| | Sample_last_update_date | Oct 16 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated from FACS sorted (described in accompanying PMID 16741228) bone marrow cells from DBA patients and control individuals using an RNA isolation kit (Qiagen) according to the manufacturer's instructions. The mRNA fractions were reverse transcribed into cDNA and amplified by One-step reverse transcription-polymerase chain reaction (RT-PCR) kit (Qiagen) using primers that flanked the beginning and the end of the coding region.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol.
| | Sample_hyb_protocol | Standard Affymetrix protocol.
| | Sample_scan_protocol | Standard Affymetrix protocol.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Alvin,T.,Kho
| | Sample_contact_email | alvin_kho@hms.harvard.edu
| | Sample_contact_phone | 617-355-6393
| | Sample_contact_department | Informatics Program
| | Sample_contact_institute | Boston Children's Hospital
| | Sample_contact_address | 320 Longwood Avenue
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1019nnn/GSM1019953/suppl/GSM1019953_ZJ-P.CEL.gz
| | Sample_series_id | GSE41599
| | Sample_data_row_count | 22283
| | |
|
GSM1019954 | GPL96 |
|
Subject D3, E cells
|
Bone marrow
|
subject id: D3
Sex: Male
age: 42 year old
cell type: erythroid E, CD34+, CD71 hi, CD45RA−
disease status: Diamond Blackfan anemia
|
|
| Sample_geo_accession | GSM1019954
| | Sample_status | Public on Oct 16 2012
| | Sample_submission_date | Oct 15 2012
| | Sample_last_update_date | Oct 16 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated from FACS sorted (described in accompanying PMID 16741228) bone marrow cells from DBA patients and control individuals using an RNA isolation kit (Qiagen) according to the manufacturer's instructions. The mRNA fractions were reverse transcribed into cDNA and amplified by One-step reverse transcription-polymerase chain reaction (RT-PCR) kit (Qiagen) using primers that flanked the beginning and the end of the coding region.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol.
| | Sample_hyb_protocol | Standard Affymetrix protocol.
| | Sample_scan_protocol | Standard Affymetrix protocol.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Alvin,T.,Kho
| | Sample_contact_email | alvin_kho@hms.harvard.edu
| | Sample_contact_phone | 617-355-6393
| | Sample_contact_department | Informatics Program
| | Sample_contact_institute | Boston Children's Hospital
| | Sample_contact_address | 320 Longwood Avenue
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1019nnn/GSM1019954/suppl/GSM1019954_BMRG-E.CEL.gz
| | Sample_series_id | GSE41599
| | Sample_data_row_count | 22283
| | |
|
GSM1019955 | GPL96 |
|
Subject D3, M cells
|
Bone marrow
|
subject id: D3
Sex: Male
age: 42 year old
cell type: myeloid M, CD34+, CD71 low, CD45RA+
disease status: Diamond Blackfan anemia
|
|
| Sample_geo_accession | GSM1019955
| | Sample_status | Public on Oct 16 2012
| | Sample_submission_date | Oct 15 2012
| | Sample_last_update_date | Oct 16 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated from FACS sorted (described in accompanying PMID 16741228) bone marrow cells from DBA patients and control individuals using an RNA isolation kit (Qiagen) according to the manufacturer's instructions. The mRNA fractions were reverse transcribed into cDNA and amplified by One-step reverse transcription-polymerase chain reaction (RT-PCR) kit (Qiagen) using primers that flanked the beginning and the end of the coding region.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol.
| | Sample_hyb_protocol | Standard Affymetrix protocol.
| | Sample_scan_protocol | Standard Affymetrix protocol.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Alvin,T.,Kho
| | Sample_contact_email | alvin_kho@hms.harvard.edu
| | Sample_contact_phone | 617-355-6393
| | Sample_contact_department | Informatics Program
| | Sample_contact_institute | Boston Children's Hospital
| | Sample_contact_address | 320 Longwood Avenue
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1019nnn/GSM1019955/suppl/GSM1019955_BMRG-L.CEL.gz
| | Sample_series_id | GSE41599
| | Sample_data_row_count | 22283
| | |
|
GSM1019956 | GPL96 |
|
Subject D3, P cells
|
Bone marrow
|
subject id: D3
Sex: Male
age: 42 year old
cell type: multipotential P, CD34+, CD71−, CD45RA−
disease status: Diamond Blackfan anemia
|
|
| Sample_geo_accession | GSM1019956
| | Sample_status | Public on Oct 16 2012
| | Sample_submission_date | Oct 15 2012
| | Sample_last_update_date | Oct 16 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated from FACS sorted (described in accompanying PMID 16741228) bone marrow cells from DBA patients and control individuals using an RNA isolation kit (Qiagen) according to the manufacturer's instructions. The mRNA fractions were reverse transcribed into cDNA and amplified by One-step reverse transcription-polymerase chain reaction (RT-PCR) kit (Qiagen) using primers that flanked the beginning and the end of the coding region.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol.
| | Sample_hyb_protocol | Standard Affymetrix protocol.
| | Sample_scan_protocol | Standard Affymetrix protocol.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Alvin,T.,Kho
| | Sample_contact_email | alvin_kho@hms.harvard.edu
| | Sample_contact_phone | 617-355-6393
| | Sample_contact_department | Informatics Program
| | Sample_contact_institute | Boston Children's Hospital
| | Sample_contact_address | 320 Longwood Avenue
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1019nnn/GSM1019956/suppl/GSM1019956_BMRG-P.CEL.gz
| | Sample_series_id | GSE41599
| | Sample_data_row_count | 22283
| | |
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