Search results for the GEO ID: GSE41662  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM1021248 | GPL570 |
|
1134 lesional
|
Lesional skin biopsy from psoriasis patient
|
tissue type: Lesional skin
|
|
| Sample_geo_accession | GSM1021248
| | Sample_status | Public on Jan 28 2013
| | Sample_submission_date | Oct 17 2012
| | Sample_last_update_date | Jan 29 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The frozen biopsies were homogenized using a TissueRuptor and RNA extracted using the mirVana™ kit with on-column DNase treatment
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Total RNA was reverse-transcribed and amplified using the NuGen Ovation™ RNA amplification system V2 with Ovation™WB reagent. Amplified RNA was fragmented and labeled using the NuGen FL-Ovation™ cDNA Biotin Module V2. Amplification and labeling were performed on a Beckman-Coulter ArrayPlex.
| | Sample_hyb_protocol | Procedure used standard Affymetrix protocol.
| | Sample_scan_protocol | Procedure used standard Affymetrix protocol.
| | Sample_data_processing | Scans were imported into Rosetta Resolver and pre-processed using the 'Resolver Affymetrix Rosetta Intensity Profile Builder (saves reporters)' pipeline
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jeannette,,Bigler
| | Sample_contact_email | jbigler@amgen.com
| | Sample_contact_institute | Amgen, Inc.
| | Sample_contact_address | 1201 Amgen Court West
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98119
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1021nnn/GSM1021248/suppl/GSM1021248_skn47470.CEL.gz
| | Sample_series_id | GSE41662
| | Sample_series_id | GSE41664
| | Sample_data_row_count | 54675
| | |
|
GSM1021249 | GPL570 |
|
1134 non-lesional
|
Non-lesional skin biopsy from psoriasis patient
|
tissue type: Non-lesional skin
|
|
| Sample_geo_accession | GSM1021249
| | Sample_status | Public on Jan 28 2013
| | Sample_submission_date | Oct 17 2012
| | Sample_last_update_date | Jan 29 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The frozen biopsies were homogenized using a TissueRuptor and RNA extracted using the mirVana™ kit with on-column DNase treatment
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Total RNA was reverse-transcribed and amplified using the NuGen Ovation™ RNA amplification system V2 with Ovation™WB reagent. Amplified RNA was fragmented and labeled using the NuGen FL-Ovation™ cDNA Biotin Module V2. Amplification and labeling were performed on a Beckman-Coulter ArrayPlex.
| | Sample_hyb_protocol | Procedure used standard Affymetrix protocol.
| | Sample_scan_protocol | Procedure used standard Affymetrix protocol.
| | Sample_data_processing | Scans were imported into Rosetta Resolver and pre-processed using the 'Resolver Affymetrix Rosetta Intensity Profile Builder (saves reporters)' pipeline
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jeannette,,Bigler
| | Sample_contact_email | jbigler@amgen.com
| | Sample_contact_institute | Amgen, Inc.
| | Sample_contact_address | 1201 Amgen Court West
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98119
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1021nnn/GSM1021249/suppl/GSM1021249_skn47471.CEL.gz
| | Sample_series_id | GSE41662
| | Sample_series_id | GSE41664
| | Sample_data_row_count | 54675
| | |
|
GSM1021250 | GPL570 |
|
1135 lesional
|
Lesional skin biopsy from psoriasis patient
|
tissue type: Lesional skin
|
|
| Sample_geo_accession | GSM1021250
| | Sample_status | Public on Jan 28 2013
| | Sample_submission_date | Oct 17 2012
| | Sample_last_update_date | Jan 29 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The frozen biopsies were homogenized using a TissueRuptor and RNA extracted using the mirVana™ kit with on-column DNase treatment
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Total RNA was reverse-transcribed and amplified using the NuGen Ovation™ RNA amplification system V2 with Ovation™WB reagent. Amplified RNA was fragmented and labeled using the NuGen FL-Ovation™ cDNA Biotin Module V2. Amplification and labeling were performed on a Beckman-Coulter ArrayPlex.
| | Sample_hyb_protocol | Procedure used standard Affymetrix protocol.
| | Sample_scan_protocol | Procedure used standard Affymetrix protocol.
| | Sample_data_processing | Scans were imported into Rosetta Resolver and pre-processed using the 'Resolver Affymetrix Rosetta Intensity Profile Builder (saves reporters)' pipeline
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jeannette,,Bigler
| | Sample_contact_email | jbigler@amgen.com
| | Sample_contact_institute | Amgen, Inc.
| | Sample_contact_address | 1201 Amgen Court West
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98119
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1021nnn/GSM1021250/suppl/GSM1021250_skn47474.CEL.gz
| | Sample_series_id | GSE41662
| | Sample_series_id | GSE41664
| | Sample_data_row_count | 54675
| | |
|
GSM1021251 | GPL570 |
|
1135 non-lesional
|
Non-lesional skin biopsy from psoriasis patient
|
tissue type: Non-lesional skin
|
|
| Sample_geo_accession | GSM1021251
| | Sample_status | Public on Jan 28 2013
| | Sample_submission_date | Oct 17 2012
| | Sample_last_update_date | Jan 29 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The frozen biopsies were homogenized using a TissueRuptor and RNA extracted using the mirVana™ kit with on-column DNase treatment
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Total RNA was reverse-transcribed and amplified using the NuGen Ovation™ RNA amplification system V2 with Ovation™WB reagent. Amplified RNA was fragmented and labeled using the NuGen FL-Ovation™ cDNA Biotin Module V2. Amplification and labeling were performed on a Beckman-Coulter ArrayPlex.
| | Sample_hyb_protocol | Procedure used standard Affymetrix protocol.
| | Sample_scan_protocol | Procedure used standard Affymetrix protocol.
| | Sample_data_processing | Scans were imported into Rosetta Resolver and pre-processed using the 'Resolver Affymetrix Rosetta Intensity Profile Builder (saves reporters)' pipeline
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jeannette,,Bigler
| | Sample_contact_email | jbigler@amgen.com
| | Sample_contact_institute | Amgen, Inc.
| | Sample_contact_address | 1201 Amgen Court West
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98119
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1021nnn/GSM1021251/suppl/GSM1021251_skn47475.CEL.gz
| | Sample_series_id | GSE41662
| | Sample_series_id | GSE41664
| | Sample_data_row_count | 54675
| | |
|
GSM1021252 | GPL570 |
|
1138 lesional
|
Lesional skin biopsy from psoriasis patient
|
tissue type: Lesional skin
|
|
| Sample_geo_accession | GSM1021252
| | Sample_status | Public on Jan 28 2013
| | Sample_submission_date | Oct 17 2012
| | Sample_last_update_date | Jan 29 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The frozen biopsies were homogenized using a TissueRuptor and RNA extracted using the mirVana™ kit with on-column DNase treatment
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Total RNA was reverse-transcribed and amplified using the NuGen Ovation™ RNA amplification system V2 with Ovation™WB reagent. Amplified RNA was fragmented and labeled using the NuGen FL-Ovation™ cDNA Biotin Module V2. Amplification and labeling were performed on a Beckman-Coulter ArrayPlex.
| | Sample_hyb_protocol | Procedure used standard Affymetrix protocol.
| | Sample_scan_protocol | Procedure used standard Affymetrix protocol.
| | Sample_data_processing | Scans were imported into Rosetta Resolver and pre-processed using the 'Resolver Affymetrix Rosetta Intensity Profile Builder (saves reporters)' pipeline
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jeannette,,Bigler
| | Sample_contact_email | jbigler@amgen.com
| | Sample_contact_institute | Amgen, Inc.
| | Sample_contact_address | 1201 Amgen Court West
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98119
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1021nnn/GSM1021252/suppl/GSM1021252_skn47478.CEL.gz
| | Sample_series_id | GSE41662
| | Sample_series_id | GSE41664
| | Sample_data_row_count | 54675
| | |
|
GSM1021253 | GPL570 |
|
1138 non-lesional
|
Non-lesional skin biopsy from psoriasis patient
|
tissue type: Non-lesional skin
|
|
| Sample_geo_accession | GSM1021253
| | Sample_status | Public on Jan 28 2013
| | Sample_submission_date | Oct 17 2012
| | Sample_last_update_date | Jan 29 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The frozen biopsies were homogenized using a TissueRuptor and RNA extracted using the mirVana™ kit with on-column DNase treatment
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Total RNA was reverse-transcribed and amplified using the NuGen Ovation™ RNA amplification system V2 with Ovation™WB reagent. Amplified RNA was fragmented and labeled using the NuGen FL-Ovation™ cDNA Biotin Module V2. Amplification and labeling were performed on a Beckman-Coulter ArrayPlex.
| | Sample_hyb_protocol | Procedure used standard Affymetrix protocol.
| | Sample_scan_protocol | Procedure used standard Affymetrix protocol.
| | Sample_data_processing | Scans were imported into Rosetta Resolver and pre-processed using the 'Resolver Affymetrix Rosetta Intensity Profile Builder (saves reporters)' pipeline
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jeannette,,Bigler
| | Sample_contact_email | jbigler@amgen.com
| | Sample_contact_institute | Amgen, Inc.
| | Sample_contact_address | 1201 Amgen Court West
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98119
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1021nnn/GSM1021253/suppl/GSM1021253_skn47480.CEL.gz
| | Sample_series_id | GSE41662
| | Sample_series_id | GSE41664
| | Sample_data_row_count | 54675
| | |
|
GSM1021254 | GPL570 |
|
1141 lesional
|
Lesional skin biopsy from psoriasis patient
|
tissue type: Lesional skin
|
|
| Sample_geo_accession | GSM1021254
| | Sample_status | Public on Jan 28 2013
| | Sample_submission_date | Oct 17 2012
| | Sample_last_update_date | Jan 29 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The frozen biopsies were homogenized using a TissueRuptor and RNA extracted using the mirVana™ kit with on-column DNase treatment
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Total RNA was reverse-transcribed and amplified using the NuGen Ovation™ RNA amplification system V2 with Ovation™WB reagent. Amplified RNA was fragmented and labeled using the NuGen FL-Ovation™ cDNA Biotin Module V2. Amplification and labeling were performed on a Beckman-Coulter ArrayPlex.
| | Sample_hyb_protocol | Procedure used standard Affymetrix protocol.
| | Sample_scan_protocol | Procedure used standard Affymetrix protocol.
| | Sample_data_processing | Scans were imported into Rosetta Resolver and pre-processed using the 'Resolver Affymetrix Rosetta Intensity Profile Builder (saves reporters)' pipeline
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jeannette,,Bigler
| | Sample_contact_email | jbigler@amgen.com
| | Sample_contact_institute | Amgen, Inc.
| | Sample_contact_address | 1201 Amgen Court West
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98119
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1021nnn/GSM1021254/suppl/GSM1021254_skn48861.CEL.gz
| | Sample_series_id | GSE41662
| | Sample_series_id | GSE41664
| | Sample_data_row_count | 54675
| | |
|
GSM1021255 | GPL570 |
|
1141 non-lesional
|
Non-lesional skin biopsy from psoriasis patient
|
tissue type: Non-lesional skin
|
|
| Sample_geo_accession | GSM1021255
| | Sample_status | Public on Jan 28 2013
| | Sample_submission_date | Oct 17 2012
| | Sample_last_update_date | Jan 29 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The frozen biopsies were homogenized using a TissueRuptor and RNA extracted using the mirVana™ kit with on-column DNase treatment
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Total RNA was reverse-transcribed and amplified using the NuGen Ovation™ RNA amplification system V2 with Ovation™WB reagent. Amplified RNA was fragmented and labeled using the NuGen FL-Ovation™ cDNA Biotin Module V2. Amplification and labeling were performed on a Beckman-Coulter ArrayPlex.
| | Sample_hyb_protocol | Procedure used standard Affymetrix protocol.
| | Sample_scan_protocol | Procedure used standard Affymetrix protocol.
| | Sample_data_processing | Scans were imported into Rosetta Resolver and pre-processed using the 'Resolver Affymetrix Rosetta Intensity Profile Builder (saves reporters)' pipeline
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jeannette,,Bigler
| | Sample_contact_email | jbigler@amgen.com
| | Sample_contact_institute | Amgen, Inc.
| | Sample_contact_address | 1201 Amgen Court West
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98119
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1021nnn/GSM1021255/suppl/GSM1021255_skn48862.CEL.gz
| | Sample_series_id | GSE41662
| | Sample_series_id | GSE41664
| | Sample_data_row_count | 54675
| | |
|
GSM1021256 | GPL570 |
|
1139 lesional
|
Lesional skin biopsy from psoriasis patient
|
tissue type: Lesional skin
|
|
| Sample_geo_accession | GSM1021256
| | Sample_status | Public on Jan 28 2013
| | Sample_submission_date | Oct 17 2012
| | Sample_last_update_date | Jan 29 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The frozen biopsies were homogenized using a TissueRuptor and RNA extracted using the mirVana™ kit with on-column DNase treatment
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Total RNA was reverse-transcribed and amplified using the NuGen Ovation™ RNA amplification system V2 with Ovation™WB reagent. Amplified RNA was fragmented and labeled using the NuGen FL-Ovation™ cDNA Biotin Module V2. Amplification and labeling were performed on a Beckman-Coulter ArrayPlex.
| | Sample_hyb_protocol | Procedure used standard Affymetrix protocol.
| | Sample_scan_protocol | Procedure used standard Affymetrix protocol.
| | Sample_data_processing | Scans were imported into Rosetta Resolver and pre-processed using the 'Resolver Affymetrix Rosetta Intensity Profile Builder (saves reporters)' pipeline
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jeannette,,Bigler
| | Sample_contact_email | jbigler@amgen.com
| | Sample_contact_institute | Amgen, Inc.
| | Sample_contact_address | 1201 Amgen Court West
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98119
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1021nnn/GSM1021256/suppl/GSM1021256_skn48865.CEL.gz
| | Sample_series_id | GSE41662
| | Sample_series_id | GSE41664
| | Sample_data_row_count | 54675
| | |
|
GSM1021257 | GPL570 |
|
1139 non-lesional
|
Non-lesional skin biopsy from psoriasis patient
|
tissue type: Non-lesional skin
|
|
| Sample_geo_accession | GSM1021257
| | Sample_status | Public on Jan 28 2013
| | Sample_submission_date | Oct 17 2012
| | Sample_last_update_date | Jan 29 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The frozen biopsies were homogenized using a TissueRuptor and RNA extracted using the mirVana™ kit with on-column DNase treatment
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Total RNA was reverse-transcribed and amplified using the NuGen Ovation™ RNA amplification system V2 with Ovation™WB reagent. Amplified RNA was fragmented and labeled using the NuGen FL-Ovation™ cDNA Biotin Module V2. Amplification and labeling were performed on a Beckman-Coulter ArrayPlex.
| | Sample_hyb_protocol | Procedure used standard Affymetrix protocol.
| | Sample_scan_protocol | Procedure used standard Affymetrix protocol.
| | Sample_data_processing | Scans were imported into Rosetta Resolver and pre-processed using the 'Resolver Affymetrix Rosetta Intensity Profile Builder (saves reporters)' pipeline
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jeannette,,Bigler
| | Sample_contact_email | jbigler@amgen.com
| | Sample_contact_institute | Amgen, Inc.
| | Sample_contact_address | 1201 Amgen Court West
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98119
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1021nnn/GSM1021257/suppl/GSM1021257_skn48866.CEL.gz
| | Sample_series_id | GSE41662
| | Sample_series_id | GSE41664
| | Sample_data_row_count | 54675
| | |
|
GSM1021258 | GPL570 |
|
3005 lesional
|
Lesional skin biopsy from psoriasis patient
|
tissue type: Lesional skin
|
|
| Sample_geo_accession | GSM1021258
| | Sample_status | Public on Jan 28 2013
| | Sample_submission_date | Oct 17 2012
| | Sample_last_update_date | Jan 29 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The frozen biopsies were homogenized using a TissueRuptor and RNA extracted using the mirVana™ kit with on-column DNase treatment
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Total RNA was reverse-transcribed and amplified using the NuGen Ovation™ RNA amplification system V2 with Ovation™WB reagent. Amplified RNA was fragmented and labeled using the NuGen FL-Ovation™ cDNA Biotin Module V2. Amplification and labeling were performed on a Beckman-Coulter ArrayPlex.
| | Sample_hyb_protocol | Procedure used standard Affymetrix protocol.
| | Sample_scan_protocol | Procedure used standard Affymetrix protocol.
| | Sample_data_processing | Scans were imported into Rosetta Resolver and pre-processed using the 'Resolver Affymetrix Rosetta Intensity Profile Builder (saves reporters)' pipeline
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jeannette,,Bigler
| | Sample_contact_email | jbigler@amgen.com
| | Sample_contact_institute | Amgen, Inc.
| | Sample_contact_address | 1201 Amgen Court West
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98119
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1021nnn/GSM1021258/suppl/GSM1021258_skn48869.CEL.gz
| | Sample_series_id | GSE41662
| | Sample_series_id | GSE41664
| | Sample_data_row_count | 54675
| | |
|
GSM1021259 | GPL570 |
|
3005 non-lesional
|
Non-lesional skin biopsy from psoriasis patient
|
tissue type: Non-lesional skin
|
|
| Sample_geo_accession | GSM1021259
| | Sample_status | Public on Jan 28 2013
| | Sample_submission_date | Oct 17 2012
| | Sample_last_update_date | Jan 29 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The frozen biopsies were homogenized using a TissueRuptor and RNA extracted using the mirVana™ kit with on-column DNase treatment
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Total RNA was reverse-transcribed and amplified using the NuGen Ovation™ RNA amplification system V2 with Ovation™WB reagent. Amplified RNA was fragmented and labeled using the NuGen FL-Ovation™ cDNA Biotin Module V2. Amplification and labeling were performed on a Beckman-Coulter ArrayPlex.
| | Sample_hyb_protocol | Procedure used standard Affymetrix protocol.
| | Sample_scan_protocol | Procedure used standard Affymetrix protocol.
| | Sample_data_processing | Scans were imported into Rosetta Resolver and pre-processed using the 'Resolver Affymetrix Rosetta Intensity Profile Builder (saves reporters)' pipeline
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jeannette,,Bigler
| | Sample_contact_email | jbigler@amgen.com
| | Sample_contact_institute | Amgen, Inc.
| | Sample_contact_address | 1201 Amgen Court West
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98119
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1021nnn/GSM1021259/suppl/GSM1021259_skn48870.CEL.gz
| | Sample_series_id | GSE41662
| | Sample_series_id | GSE41664
| | Sample_data_row_count | 54675
| | |
|
GSM1021260 | GPL570 |
|
1145 lesional
|
Lesional skin biopsy from psoriasis patient
|
tissue type: Lesional skin
|
|
| Sample_geo_accession | GSM1021260
| | Sample_status | Public on Jan 28 2013
| | Sample_submission_date | Oct 17 2012
| | Sample_last_update_date | Jan 29 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The frozen biopsies were homogenized using a TissueRuptor and RNA extracted using the mirVana™ kit with on-column DNase treatment
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Total RNA was reverse-transcribed and amplified using the NuGen Ovation™ RNA amplification system V2 with Ovation™WB reagent. Amplified RNA was fragmented and labeled using the NuGen FL-Ovation™ cDNA Biotin Module V2. Amplification and labeling were performed on a Beckman-Coulter ArrayPlex.
| | Sample_hyb_protocol | Procedure used standard Affymetrix protocol.
| | Sample_scan_protocol | Procedure used standard Affymetrix protocol.
| | Sample_data_processing | Scans were imported into Rosetta Resolver and pre-processed using the 'Resolver Affymetrix Rosetta Intensity Profile Builder (saves reporters)' pipeline
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jeannette,,Bigler
| | Sample_contact_email | jbigler@amgen.com
| | Sample_contact_institute | Amgen, Inc.
| | Sample_contact_address | 1201 Amgen Court West
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98119
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1021nnn/GSM1021260/suppl/GSM1021260_skn48872.CEL.gz
| | Sample_series_id | GSE41662
| | Sample_series_id | GSE41664
| | Sample_data_row_count | 54675
| | |
|
GSM1021261 | GPL570 |
|
1145 non-lesional
|
Non-lesional skin biopsy from psoriasis patient
|
tissue type: Non-lesional skin
|
|
| Sample_geo_accession | GSM1021261
| | Sample_status | Public on Jan 28 2013
| | Sample_submission_date | Oct 17 2012
| | Sample_last_update_date | Jan 29 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The frozen biopsies were homogenized using a TissueRuptor and RNA extracted using the mirVana™ kit with on-column DNase treatment
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Total RNA was reverse-transcribed and amplified using the NuGen Ovation™ RNA amplification system V2 with Ovation™WB reagent. Amplified RNA was fragmented and labeled using the NuGen FL-Ovation™ cDNA Biotin Module V2. Amplification and labeling were performed on a Beckman-Coulter ArrayPlex.
| | Sample_hyb_protocol | Procedure used standard Affymetrix protocol.
| | Sample_scan_protocol | Procedure used standard Affymetrix protocol.
| | Sample_data_processing | Scans were imported into Rosetta Resolver and pre-processed using the 'Resolver Affymetrix Rosetta Intensity Profile Builder (saves reporters)' pipeline
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jeannette,,Bigler
| | Sample_contact_email | jbigler@amgen.com
| | Sample_contact_institute | Amgen, Inc.
| | Sample_contact_address | 1201 Amgen Court West
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98119
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1021nnn/GSM1021261/suppl/GSM1021261_skn48873.CEL.gz
| | Sample_series_id | GSE41662
| | Sample_series_id | GSE41664
| | Sample_data_row_count | 54675
| | |
|
GSM1021262 | GPL570 |
|
3008 lesional
|
Lesional skin biopsy from psoriasis patient
|
tissue type: Lesional skin
|
|
| Sample_geo_accession | GSM1021262
| | Sample_status | Public on Jan 28 2013
| | Sample_submission_date | Oct 17 2012
| | Sample_last_update_date | Jan 29 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The frozen biopsies were homogenized using a TissueRuptor and RNA extracted using the mirVana™ kit with on-column DNase treatment
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Total RNA was reverse-transcribed and amplified using the NuGen Ovation™ RNA amplification system V2 with Ovation™WB reagent. Amplified RNA was fragmented and labeled using the NuGen FL-Ovation™ cDNA Biotin Module V2. Amplification and labeling were performed on a Beckman-Coulter ArrayPlex.
| | Sample_hyb_protocol | Procedure used standard Affymetrix protocol.
| | Sample_scan_protocol | Procedure used standard Affymetrix protocol.
| | Sample_data_processing | Scans were imported into Rosetta Resolver and pre-processed using the 'Resolver Affymetrix Rosetta Intensity Profile Builder (saves reporters)' pipeline
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jeannette,,Bigler
| | Sample_contact_email | jbigler@amgen.com
| | Sample_contact_institute | Amgen, Inc.
| | Sample_contact_address | 1201 Amgen Court West
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98119
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1021nnn/GSM1021262/suppl/GSM1021262_skn48875.CEL.gz
| | Sample_series_id | GSE41662
| | Sample_series_id | GSE41664
| | Sample_data_row_count | 54675
| | |
|
GSM1021263 | GPL570 |
|
3008 non-lesional
|
Non-lesional skin biopsy from psoriasis patient
|
tissue type: Non-lesional skin
|
|
| Sample_geo_accession | GSM1021263
| | Sample_status | Public on Jan 28 2013
| | Sample_submission_date | Oct 17 2012
| | Sample_last_update_date | Jan 29 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The frozen biopsies were homogenized using a TissueRuptor and RNA extracted using the mirVana™ kit with on-column DNase treatment
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Total RNA was reverse-transcribed and amplified using the NuGen Ovation™ RNA amplification system V2 with Ovation™WB reagent. Amplified RNA was fragmented and labeled using the NuGen FL-Ovation™ cDNA Biotin Module V2. Amplification and labeling were performed on a Beckman-Coulter ArrayPlex.
| | Sample_hyb_protocol | Procedure used standard Affymetrix protocol.
| | Sample_scan_protocol | Procedure used standard Affymetrix protocol.
| | Sample_data_processing | Scans were imported into Rosetta Resolver and pre-processed using the 'Resolver Affymetrix Rosetta Intensity Profile Builder (saves reporters)' pipeline
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jeannette,,Bigler
| | Sample_contact_email | jbigler@amgen.com
| | Sample_contact_institute | Amgen, Inc.
| | Sample_contact_address | 1201 Amgen Court West
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98119
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1021nnn/GSM1021263/suppl/GSM1021263_skn48876.CEL.gz
| | Sample_series_id | GSE41662
| | Sample_series_id | GSE41664
| | Sample_data_row_count | 54675
| | |
|
GSM1021264 | GPL570 |
|
3002 lesional
|
Lesional skin biopsy from psoriasis patient
|
tissue type: Lesional skin
|
|
| Sample_geo_accession | GSM1021264
| | Sample_status | Public on Jan 28 2013
| | Sample_submission_date | Oct 17 2012
| | Sample_last_update_date | Jan 29 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The frozen biopsies were homogenized using a TissueRuptor and RNA extracted using the mirVana™ kit with on-column DNase treatment
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Total RNA was reverse-transcribed and amplified using the NuGen Ovation™ RNA amplification system V2 with Ovation™WB reagent. Amplified RNA was fragmented and labeled using the NuGen FL-Ovation™ cDNA Biotin Module V2. Amplification and labeling were performed on a Beckman-Coulter ArrayPlex.
| | Sample_hyb_protocol | Procedure used standard Affymetrix protocol.
| | Sample_scan_protocol | Procedure used standard Affymetrix protocol.
| | Sample_data_processing | Scans were imported into Rosetta Resolver and pre-processed using the 'Resolver Affymetrix Rosetta Intensity Profile Builder (saves reporters)' pipeline
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jeannette,,Bigler
| | Sample_contact_email | jbigler@amgen.com
| | Sample_contact_institute | Amgen, Inc.
| | Sample_contact_address | 1201 Amgen Court West
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98119
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1021nnn/GSM1021264/suppl/GSM1021264_skn48878.CEL.gz
| | Sample_series_id | GSE41662
| | Sample_series_id | GSE41664
| | Sample_data_row_count | 54675
| | |
|
GSM1021265 | GPL570 |
|
3002 non-lesional
|
Non-lesional skin biopsy from psoriasis patient
|
tissue type: Non-lesional skin
|
|
| Sample_geo_accession | GSM1021265
| | Sample_status | Public on Jan 28 2013
| | Sample_submission_date | Oct 17 2012
| | Sample_last_update_date | Jan 29 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The frozen biopsies were homogenized using a TissueRuptor and RNA extracted using the mirVana™ kit with on-column DNase treatment
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Total RNA was reverse-transcribed and amplified using the NuGen Ovation™ RNA amplification system V2 with Ovation™WB reagent. Amplified RNA was fragmented and labeled using the NuGen FL-Ovation™ cDNA Biotin Module V2. Amplification and labeling were performed on a Beckman-Coulter ArrayPlex.
| | Sample_hyb_protocol | Procedure used standard Affymetrix protocol.
| | Sample_scan_protocol | Procedure used standard Affymetrix protocol.
| | Sample_data_processing | Scans were imported into Rosetta Resolver and pre-processed using the 'Resolver Affymetrix Rosetta Intensity Profile Builder (saves reporters)' pipeline
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jeannette,,Bigler
| | Sample_contact_email | jbigler@amgen.com
| | Sample_contact_institute | Amgen, Inc.
| | Sample_contact_address | 1201 Amgen Court West
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98119
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1021nnn/GSM1021265/suppl/GSM1021265_skn48879.CEL.gz
| | Sample_series_id | GSE41662
| | Sample_series_id | GSE41664
| | Sample_data_row_count | 54675
| | |
|
GSM1021266 | GPL570 |
|
3003 lesional
|
Lesional skin biopsy from psoriasis patient
|
tissue type: Lesional skin
|
|
| Sample_geo_accession | GSM1021266
| | Sample_status | Public on Jan 28 2013
| | Sample_submission_date | Oct 17 2012
| | Sample_last_update_date | Jan 29 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The frozen biopsies were homogenized using a TissueRuptor and RNA extracted using the mirVana™ kit with on-column DNase treatment
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Total RNA was reverse-transcribed and amplified using the NuGen Ovation™ RNA amplification system V2 with Ovation™WB reagent. Amplified RNA was fragmented and labeled using the NuGen FL-Ovation™ cDNA Biotin Module V2. Amplification and labeling were performed on a Beckman-Coulter ArrayPlex.
| | Sample_hyb_protocol | Procedure used standard Affymetrix protocol.
| | Sample_scan_protocol | Procedure used standard Affymetrix protocol.
| | Sample_data_processing | Scans were imported into Rosetta Resolver and pre-processed using the 'Resolver Affymetrix Rosetta Intensity Profile Builder (saves reporters)' pipeline
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jeannette,,Bigler
| | Sample_contact_email | jbigler@amgen.com
| | Sample_contact_institute | Amgen, Inc.
| | Sample_contact_address | 1201 Amgen Court West
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98119
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1021nnn/GSM1021266/suppl/GSM1021266_skn48882.CEL.gz
| | Sample_series_id | GSE41662
| | Sample_series_id | GSE41664
| | Sample_data_row_count | 54675
| | |
|
GSM1021267 | GPL570 |
|
3003 non-lesional
|
Non-lesional skin biopsy from psoriasis patient
|
tissue type: Non-lesional skin
|
|
| Sample_geo_accession | GSM1021267
| | Sample_status | Public on Jan 28 2013
| | Sample_submission_date | Oct 17 2012
| | Sample_last_update_date | Jan 29 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The frozen biopsies were homogenized using a TissueRuptor and RNA extracted using the mirVana™ kit with on-column DNase treatment
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Total RNA was reverse-transcribed and amplified using the NuGen Ovation™ RNA amplification system V2 with Ovation™WB reagent. Amplified RNA was fragmented and labeled using the NuGen FL-Ovation™ cDNA Biotin Module V2. Amplification and labeling were performed on a Beckman-Coulter ArrayPlex.
| | Sample_hyb_protocol | Procedure used standard Affymetrix protocol.
| | Sample_scan_protocol | Procedure used standard Affymetrix protocol.
| | Sample_data_processing | Scans were imported into Rosetta Resolver and pre-processed using the 'Resolver Affymetrix Rosetta Intensity Profile Builder (saves reporters)' pipeline
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jeannette,,Bigler
| | Sample_contact_email | jbigler@amgen.com
| | Sample_contact_institute | Amgen, Inc.
| | Sample_contact_address | 1201 Amgen Court West
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98119
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1021nnn/GSM1021267/suppl/GSM1021267_skn48883.CEL.gz
| | Sample_series_id | GSE41662
| | Sample_series_id | GSE41664
| | Sample_data_row_count | 54675
| | |
|
GSM1021268 | GPL570 |
|
1147 lesional
|
Lesional skin biopsy from psoriasis patient
|
tissue type: Lesional skin
|
|
| Sample_geo_accession | GSM1021268
| | Sample_status | Public on Jan 28 2013
| | Sample_submission_date | Oct 17 2012
| | Sample_last_update_date | Jan 29 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The frozen biopsies were homogenized using a TissueRuptor and RNA extracted using the mirVana™ kit with on-column DNase treatment
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Total RNA was reverse-transcribed and amplified using the NuGen Ovation™ RNA amplification system V2 with Ovation™WB reagent. Amplified RNA was fragmented and labeled using the NuGen FL-Ovation™ cDNA Biotin Module V2. Amplification and labeling were performed on a Beckman-Coulter ArrayPlex.
| | Sample_hyb_protocol | Procedure used standard Affymetrix protocol.
| | Sample_scan_protocol | Procedure used standard Affymetrix protocol.
| | Sample_data_processing | Scans were imported into Rosetta Resolver and pre-processed using the 'Resolver Affymetrix Rosetta Intensity Profile Builder (saves reporters)' pipeline
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jeannette,,Bigler
| | Sample_contact_email | jbigler@amgen.com
| | Sample_contact_institute | Amgen, Inc.
| | Sample_contact_address | 1201 Amgen Court West
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98119
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1021nnn/GSM1021268/suppl/GSM1021268_skn55781.CEL.gz
| | Sample_series_id | GSE41662
| | Sample_series_id | GSE41664
| | Sample_data_row_count | 54675
| | |
|
GSM1021269 | GPL570 |
|
1147 non-lesional
|
Non-lesional skin biopsy from psoriasis patient
|
tissue type: Non-lesional skin
|
|
| Sample_geo_accession | GSM1021269
| | Sample_status | Public on Jan 28 2013
| | Sample_submission_date | Oct 17 2012
| | Sample_last_update_date | Jan 29 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The frozen biopsies were homogenized using a TissueRuptor and RNA extracted using the mirVana™ kit with on-column DNase treatment
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Total RNA was reverse-transcribed and amplified using the NuGen Ovation™ RNA amplification system V2 with Ovation™WB reagent. Amplified RNA was fragmented and labeled using the NuGen FL-Ovation™ cDNA Biotin Module V2. Amplification and labeling were performed on a Beckman-Coulter ArrayPlex.
| | Sample_hyb_protocol | Procedure used standard Affymetrix protocol.
| | Sample_scan_protocol | Procedure used standard Affymetrix protocol.
| | Sample_data_processing | Scans were imported into Rosetta Resolver and pre-processed using the 'Resolver Affymetrix Rosetta Intensity Profile Builder (saves reporters)' pipeline
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jeannette,,Bigler
| | Sample_contact_email | jbigler@amgen.com
| | Sample_contact_institute | Amgen, Inc.
| | Sample_contact_address | 1201 Amgen Court West
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98119
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1021nnn/GSM1021269/suppl/GSM1021269_skn55782.CEL.gz
| | Sample_series_id | GSE41662
| | Sample_series_id | GSE41664
| | Sample_data_row_count | 54675
| | |
|
GSM1021270 | GPL570 |
|
1148 lesional
|
Lesional skin biopsy from psoriasis patient
|
tissue type: Lesional skin
|
|
| Sample_geo_accession | GSM1021270
| | Sample_status | Public on Jan 28 2013
| | Sample_submission_date | Oct 17 2012
| | Sample_last_update_date | Jan 29 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The frozen biopsies were homogenized using a TissueRuptor and RNA extracted using the mirVana™ kit with on-column DNase treatment
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Total RNA was reverse-transcribed and amplified using the NuGen Ovation™ RNA amplification system V2 with Ovation™WB reagent. Amplified RNA was fragmented and labeled using the NuGen FL-Ovation™ cDNA Biotin Module V2. Amplification and labeling were performed on a Beckman-Coulter ArrayPlex.
| | Sample_hyb_protocol | Procedure used standard Affymetrix protocol.
| | Sample_scan_protocol | Procedure used standard Affymetrix protocol.
| | Sample_data_processing | Scans were imported into Rosetta Resolver and pre-processed using the 'Resolver Affymetrix Rosetta Intensity Profile Builder (saves reporters)' pipeline
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jeannette,,Bigler
| | Sample_contact_email | jbigler@amgen.com
| | Sample_contact_institute | Amgen, Inc.
| | Sample_contact_address | 1201 Amgen Court West
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98119
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1021nnn/GSM1021270/suppl/GSM1021270_skn55785.CEL.gz
| | Sample_series_id | GSE41662
| | Sample_series_id | GSE41664
| | Sample_data_row_count | 54675
| | |
|
GSM1021271 | GPL570 |
|
1148 non-lesional
|
Non-lesional skin biopsy from psoriasis patient
|
tissue type: Non-lesional skin
|
|
| Sample_geo_accession | GSM1021271
| | Sample_status | Public on Jan 28 2013
| | Sample_submission_date | Oct 17 2012
| | Sample_last_update_date | Jan 29 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The frozen biopsies were homogenized using a TissueRuptor and RNA extracted using the mirVana™ kit with on-column DNase treatment
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Total RNA was reverse-transcribed and amplified using the NuGen Ovation™ RNA amplification system V2 with Ovation™WB reagent. Amplified RNA was fragmented and labeled using the NuGen FL-Ovation™ cDNA Biotin Module V2. Amplification and labeling were performed on a Beckman-Coulter ArrayPlex.
| | Sample_hyb_protocol | Procedure used standard Affymetrix protocol.
| | Sample_scan_protocol | Procedure used standard Affymetrix protocol.
| | Sample_data_processing | Scans were imported into Rosetta Resolver and pre-processed using the 'Resolver Affymetrix Rosetta Intensity Profile Builder (saves reporters)' pipeline
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jeannette,,Bigler
| | Sample_contact_email | jbigler@amgen.com
| | Sample_contact_institute | Amgen, Inc.
| | Sample_contact_address | 1201 Amgen Court West
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98119
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1021nnn/GSM1021271/suppl/GSM1021271_skn55786.CEL.gz
| | Sample_series_id | GSE41662
| | Sample_series_id | GSE41664
| | Sample_data_row_count | 54675
| | |
|
GSM1021272 | GPL570 |
|
1153 lesional
|
Lesional skin biopsy from psoriasis patient
|
tissue type: Lesional skin
|
|
| Sample_geo_accession | GSM1021272
| | Sample_status | Public on Jan 28 2013
| | Sample_submission_date | Oct 17 2012
| | Sample_last_update_date | Jan 29 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The frozen biopsies were homogenized using a TissueRuptor and RNA extracted using the mirVana™ kit with on-column DNase treatment
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Total RNA was reverse-transcribed and amplified using the NuGen Ovation™ RNA amplification system V2 with Ovation™WB reagent. Amplified RNA was fragmented and labeled using the NuGen FL-Ovation™ cDNA Biotin Module V2. Amplification and labeling were performed on a Beckman-Coulter ArrayPlex.
| | Sample_hyb_protocol | Procedure used standard Affymetrix protocol.
| | Sample_scan_protocol | Procedure used standard Affymetrix protocol.
| | Sample_data_processing | Scans were imported into Rosetta Resolver and pre-processed using the 'Resolver Affymetrix Rosetta Intensity Profile Builder (saves reporters)' pipeline
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jeannette,,Bigler
| | Sample_contact_email | jbigler@amgen.com
| | Sample_contact_institute | Amgen, Inc.
| | Sample_contact_address | 1201 Amgen Court West
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98119
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1021nnn/GSM1021272/suppl/GSM1021272_skn55793.CEL.gz
| | Sample_series_id | GSE41662
| | Sample_series_id | GSE41664
| | Sample_data_row_count | 54675
| | |
|
GSM1021273 | GPL570 |
|
1153 non-lesional
|
Non-lesional skin biopsy from psoriasis patient
|
tissue type: Non-lesional skin
|
|
| Sample_geo_accession | GSM1021273
| | Sample_status | Public on Jan 28 2013
| | Sample_submission_date | Oct 17 2012
| | Sample_last_update_date | Jan 29 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The frozen biopsies were homogenized using a TissueRuptor and RNA extracted using the mirVana™ kit with on-column DNase treatment
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Total RNA was reverse-transcribed and amplified using the NuGen Ovation™ RNA amplification system V2 with Ovation™WB reagent. Amplified RNA was fragmented and labeled using the NuGen FL-Ovation™ cDNA Biotin Module V2. Amplification and labeling were performed on a Beckman-Coulter ArrayPlex.
| | Sample_hyb_protocol | Procedure used standard Affymetrix protocol.
| | Sample_scan_protocol | Procedure used standard Affymetrix protocol.
| | Sample_data_processing | Scans were imported into Rosetta Resolver and pre-processed using the 'Resolver Affymetrix Rosetta Intensity Profile Builder (saves reporters)' pipeline
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jeannette,,Bigler
| | Sample_contact_email | jbigler@amgen.com
| | Sample_contact_institute | Amgen, Inc.
| | Sample_contact_address | 1201 Amgen Court West
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98119
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1021nnn/GSM1021273/suppl/GSM1021273_skn55794.CEL.gz
| | Sample_series_id | GSE41662
| | Sample_series_id | GSE41664
| | Sample_data_row_count | 54675
| | |
|
GSM1021274 | GPL570 |
|
3016 lesional
|
Lesional skin biopsy from psoriasis patient
|
tissue type: Lesional skin
|
|
| Sample_geo_accession | GSM1021274
| | Sample_status | Public on Jan 28 2013
| | Sample_submission_date | Oct 17 2012
| | Sample_last_update_date | Jan 29 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The frozen biopsies were homogenized using a TissueRuptor and RNA extracted using the mirVana™ kit with on-column DNase treatment
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Total RNA was reverse-transcribed and amplified using the NuGen Ovation™ RNA amplification system V2 with Ovation™WB reagent. Amplified RNA was fragmented and labeled using the NuGen FL-Ovation™ cDNA Biotin Module V2. Amplification and labeling were performed on a Beckman-Coulter ArrayPlex.
| | Sample_hyb_protocol | Procedure used standard Affymetrix protocol.
| | Sample_scan_protocol | Procedure used standard Affymetrix protocol.
| | Sample_data_processing | Scans were imported into Rosetta Resolver and pre-processed using the 'Resolver Affymetrix Rosetta Intensity Profile Builder (saves reporters)' pipeline
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jeannette,,Bigler
| | Sample_contact_email | jbigler@amgen.com
| | Sample_contact_institute | Amgen, Inc.
| | Sample_contact_address | 1201 Amgen Court West
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98119
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1021nnn/GSM1021274/suppl/GSM1021274_skn55797.CEL.gz
| | Sample_series_id | GSE41662
| | Sample_series_id | GSE41664
| | Sample_data_row_count | 54675
| | |
|
GSM1021275 | GPL570 |
|
3016 non-lesional
|
Non-lesional skin biopsy from psoriasis patient
|
tissue type: Non-lesional skin
|
|
| Sample_geo_accession | GSM1021275
| | Sample_status | Public on Jan 28 2013
| | Sample_submission_date | Oct 17 2012
| | Sample_last_update_date | Jan 29 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The frozen biopsies were homogenized using a TissueRuptor and RNA extracted using the mirVana™ kit with on-column DNase treatment
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Total RNA was reverse-transcribed and amplified using the NuGen Ovation™ RNA amplification system V2 with Ovation™WB reagent. Amplified RNA was fragmented and labeled using the NuGen FL-Ovation™ cDNA Biotin Module V2. Amplification and labeling were performed on a Beckman-Coulter ArrayPlex.
| | Sample_hyb_protocol | Procedure used standard Affymetrix protocol.
| | Sample_scan_protocol | Procedure used standard Affymetrix protocol.
| | Sample_data_processing | Scans were imported into Rosetta Resolver and pre-processed using the 'Resolver Affymetrix Rosetta Intensity Profile Builder (saves reporters)' pipeline
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jeannette,,Bigler
| | Sample_contact_email | jbigler@amgen.com
| | Sample_contact_institute | Amgen, Inc.
| | Sample_contact_address | 1201 Amgen Court West
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98119
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1021nnn/GSM1021275/suppl/GSM1021275_skn55798.CEL.gz
| | Sample_series_id | GSE41662
| | Sample_series_id | GSE41664
| | Sample_data_row_count | 54675
| | |
|
GSM1021276 | GPL570 |
|
3019 lesional
|
Lesional skin biopsy from psoriasis patient
|
tissue type: Lesional skin
|
|
| Sample_geo_accession | GSM1021276
| | Sample_status | Public on Jan 28 2013
| | Sample_submission_date | Oct 17 2012
| | Sample_last_update_date | Jan 29 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The frozen biopsies were homogenized using a TissueRuptor and RNA extracted using the mirVana™ kit with on-column DNase treatment
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Total RNA was reverse-transcribed and amplified using the NuGen Ovation™ RNA amplification system V2 with Ovation™WB reagent. Amplified RNA was fragmented and labeled using the NuGen FL-Ovation™ cDNA Biotin Module V2. Amplification and labeling were performed on a Beckman-Coulter ArrayPlex.
| | Sample_hyb_protocol | Procedure used standard Affymetrix protocol.
| | Sample_scan_protocol | Procedure used standard Affymetrix protocol.
| | Sample_data_processing | Scans were imported into Rosetta Resolver and pre-processed using the 'Resolver Affymetrix Rosetta Intensity Profile Builder (saves reporters)' pipeline
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jeannette,,Bigler
| | Sample_contact_email | jbigler@amgen.com
| | Sample_contact_institute | Amgen, Inc.
| | Sample_contact_address | 1201 Amgen Court West
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98119
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1021nnn/GSM1021276/suppl/GSM1021276_skn55801.CEL.gz
| | Sample_series_id | GSE41662
| | Sample_series_id | GSE41664
| | Sample_data_row_count | 54675
| | |
|
GSM1021277 | GPL570 |
|
3019 non-lesional
|
Non-lesional skin biopsy from psoriasis patient
|
tissue type: Non-lesional skin
|
|
| Sample_geo_accession | GSM1021277
| | Sample_status | Public on Jan 28 2013
| | Sample_submission_date | Oct 17 2012
| | Sample_last_update_date | Jan 29 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The frozen biopsies were homogenized using a TissueRuptor and RNA extracted using the mirVana™ kit with on-column DNase treatment
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Total RNA was reverse-transcribed and amplified using the NuGen Ovation™ RNA amplification system V2 with Ovation™WB reagent. Amplified RNA was fragmented and labeled using the NuGen FL-Ovation™ cDNA Biotin Module V2. Amplification and labeling were performed on a Beckman-Coulter ArrayPlex.
| | Sample_hyb_protocol | Procedure used standard Affymetrix protocol.
| | Sample_scan_protocol | Procedure used standard Affymetrix protocol.
| | Sample_data_processing | Scans were imported into Rosetta Resolver and pre-processed using the 'Resolver Affymetrix Rosetta Intensity Profile Builder (saves reporters)' pipeline
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jeannette,,Bigler
| | Sample_contact_email | jbigler@amgen.com
| | Sample_contact_institute | Amgen, Inc.
| | Sample_contact_address | 1201 Amgen Court West
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98119
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1021nnn/GSM1021277/suppl/GSM1021277_skn55802.CEL.gz
| | Sample_series_id | GSE41662
| | Sample_series_id | GSE41664
| | Sample_data_row_count | 54675
| | |
|
GSM1021278 | GPL570 |
|
3021 lesional
|
Lesional skin biopsy from psoriasis patient
|
tissue type: Lesional skin
|
|
| Sample_geo_accession | GSM1021278
| | Sample_status | Public on Jan 28 2013
| | Sample_submission_date | Oct 17 2012
| | Sample_last_update_date | Jan 29 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The frozen biopsies were homogenized using a TissueRuptor and RNA extracted using the mirVana™ kit with on-column DNase treatment
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Total RNA was reverse-transcribed and amplified using the NuGen Ovation™ RNA amplification system V2 with Ovation™WB reagent. Amplified RNA was fragmented and labeled using the NuGen FL-Ovation™ cDNA Biotin Module V2. Amplification and labeling were performed on a Beckman-Coulter ArrayPlex.
| | Sample_hyb_protocol | Procedure used standard Affymetrix protocol.
| | Sample_scan_protocol | Procedure used standard Affymetrix protocol.
| | Sample_data_processing | Scans were imported into Rosetta Resolver and pre-processed using the 'Resolver Affymetrix Rosetta Intensity Profile Builder (saves reporters)' pipeline
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jeannette,,Bigler
| | Sample_contact_email | jbigler@amgen.com
| | Sample_contact_institute | Amgen, Inc.
| | Sample_contact_address | 1201 Amgen Court West
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98119
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1021nnn/GSM1021278/suppl/GSM1021278_skn55805.CEL.gz
| | Sample_series_id | GSE41662
| | Sample_series_id | GSE41664
| | Sample_data_row_count | 54675
| | |
|
GSM1021279 | GPL570 |
|
3021 non-lesional
|
Non-lesional skin biopsy from psoriasis patient
|
tissue type: Non-lesional skin
|
|
| Sample_geo_accession | GSM1021279
| | Sample_status | Public on Jan 28 2013
| | Sample_submission_date | Oct 17 2012
| | Sample_last_update_date | Jan 29 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The frozen biopsies were homogenized using a TissueRuptor and RNA extracted using the mirVana™ kit with on-column DNase treatment
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Total RNA was reverse-transcribed and amplified using the NuGen Ovation™ RNA amplification system V2 with Ovation™WB reagent. Amplified RNA was fragmented and labeled using the NuGen FL-Ovation™ cDNA Biotin Module V2. Amplification and labeling were performed on a Beckman-Coulter ArrayPlex.
| | Sample_hyb_protocol | Procedure used standard Affymetrix protocol.
| | Sample_scan_protocol | Procedure used standard Affymetrix protocol.
| | Sample_data_processing | Scans were imported into Rosetta Resolver and pre-processed using the 'Resolver Affymetrix Rosetta Intensity Profile Builder (saves reporters)' pipeline
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jeannette,,Bigler
| | Sample_contact_email | jbigler@amgen.com
| | Sample_contact_institute | Amgen, Inc.
| | Sample_contact_address | 1201 Amgen Court West
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98119
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1021nnn/GSM1021279/suppl/GSM1021279_skn55806.CEL.gz
| | Sample_series_id | GSE41662
| | Sample_series_id | GSE41664
| | Sample_data_row_count | 54675
| | |
|
GSM1021280 | GPL570 |
|
4002 lesional
|
Lesional skin biopsy from psoriasis patient
|
tissue type: Lesional skin
|
|
| Sample_geo_accession | GSM1021280
| | Sample_status | Public on Jan 28 2013
| | Sample_submission_date | Oct 17 2012
| | Sample_last_update_date | Jan 29 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The frozen biopsies were homogenized using a TissueRuptor and RNA extracted using the mirVana™ kit with on-column DNase treatment
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Total RNA was reverse-transcribed and amplified using the NuGen Ovation™ RNA amplification system V2 with Ovation™WB reagent. Amplified RNA was fragmented and labeled using the NuGen FL-Ovation™ cDNA Biotin Module V2. Amplification and labeling were performed on a Beckman-Coulter ArrayPlex.
| | Sample_hyb_protocol | Procedure used standard Affymetrix protocol.
| | Sample_scan_protocol | Procedure used standard Affymetrix protocol.
| | Sample_data_processing | Scans were imported into Rosetta Resolver and pre-processed using the 'Resolver Affymetrix Rosetta Intensity Profile Builder (saves reporters)' pipeline
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jeannette,,Bigler
| | Sample_contact_email | jbigler@amgen.com
| | Sample_contact_institute | Amgen, Inc.
| | Sample_contact_address | 1201 Amgen Court West
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98119
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1021nnn/GSM1021280/suppl/GSM1021280_skn55809.CEL.gz
| | Sample_series_id | GSE41662
| | Sample_series_id | GSE41664
| | Sample_data_row_count | 54675
| | |
|
GSM1021281 | GPL570 |
|
4002 non-lesional
|
Non-lesional skin biopsy from psoriasis patient
|
tissue type: Non-lesional skin
|
|
| Sample_geo_accession | GSM1021281
| | Sample_status | Public on Jan 28 2013
| | Sample_submission_date | Oct 17 2012
| | Sample_last_update_date | Jan 29 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The frozen biopsies were homogenized using a TissueRuptor and RNA extracted using the mirVana™ kit with on-column DNase treatment
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Total RNA was reverse-transcribed and amplified using the NuGen Ovation™ RNA amplification system V2 with Ovation™WB reagent. Amplified RNA was fragmented and labeled using the NuGen FL-Ovation™ cDNA Biotin Module V2. Amplification and labeling were performed on a Beckman-Coulter ArrayPlex.
| | Sample_hyb_protocol | Procedure used standard Affymetrix protocol.
| | Sample_scan_protocol | Procedure used standard Affymetrix protocol.
| | Sample_data_processing | Scans were imported into Rosetta Resolver and pre-processed using the 'Resolver Affymetrix Rosetta Intensity Profile Builder (saves reporters)' pipeline
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jeannette,,Bigler
| | Sample_contact_email | jbigler@amgen.com
| | Sample_contact_institute | Amgen, Inc.
| | Sample_contact_address | 1201 Amgen Court West
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98119
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1021nnn/GSM1021281/suppl/GSM1021281_skn55810.CEL.gz
| | Sample_series_id | GSE41662
| | Sample_series_id | GSE41664
| | Sample_data_row_count | 54675
| | |
|
GSM1021282 | GPL570 |
|
4003 lesional
|
Lesional skin biopsy from psoriasis patient
|
tissue type: Lesional skin
|
|
| Sample_geo_accession | GSM1021282
| | Sample_status | Public on Jan 28 2013
| | Sample_submission_date | Oct 17 2012
| | Sample_last_update_date | Jan 29 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The frozen biopsies were homogenized using a TissueRuptor and RNA extracted using the mirVana™ kit with on-column DNase treatment
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Total RNA was reverse-transcribed and amplified using the NuGen Ovation™ RNA amplification system V2 with Ovation™WB reagent. Amplified RNA was fragmented and labeled using the NuGen FL-Ovation™ cDNA Biotin Module V2. Amplification and labeling were performed on a Beckman-Coulter ArrayPlex.
| | Sample_hyb_protocol | Procedure used standard Affymetrix protocol.
| | Sample_scan_protocol | Procedure used standard Affymetrix protocol.
| | Sample_data_processing | Scans were imported into Rosetta Resolver and pre-processed using the 'Resolver Affymetrix Rosetta Intensity Profile Builder (saves reporters)' pipeline
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jeannette,,Bigler
| | Sample_contact_email | jbigler@amgen.com
| | Sample_contact_institute | Amgen, Inc.
| | Sample_contact_address | 1201 Amgen Court West
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98119
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1021nnn/GSM1021282/suppl/GSM1021282_skn55813.CEL.gz
| | Sample_series_id | GSE41662
| | Sample_series_id | GSE41664
| | Sample_data_row_count | 54675
| | |
|
GSM1021283 | GPL570 |
|
4003 non-lesional
|
Non-lesional skin biopsy from psoriasis patient
|
tissue type: Non-lesional skin
|
|
| Sample_geo_accession | GSM1021283
| | Sample_status | Public on Jan 28 2013
| | Sample_submission_date | Oct 17 2012
| | Sample_last_update_date | Jan 29 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The frozen biopsies were homogenized using a TissueRuptor and RNA extracted using the mirVana™ kit with on-column DNase treatment
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Total RNA was reverse-transcribed and amplified using the NuGen Ovation™ RNA amplification system V2 with Ovation™WB reagent. Amplified RNA was fragmented and labeled using the NuGen FL-Ovation™ cDNA Biotin Module V2. Amplification and labeling were performed on a Beckman-Coulter ArrayPlex.
| | Sample_hyb_protocol | Procedure used standard Affymetrix protocol.
| | Sample_scan_protocol | Procedure used standard Affymetrix protocol.
| | Sample_data_processing | Scans were imported into Rosetta Resolver and pre-processed using the 'Resolver Affymetrix Rosetta Intensity Profile Builder (saves reporters)' pipeline
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jeannette,,Bigler
| | Sample_contact_email | jbigler@amgen.com
| | Sample_contact_institute | Amgen, Inc.
| | Sample_contact_address | 1201 Amgen Court West
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98119
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1021nnn/GSM1021283/suppl/GSM1021283_skn55814.CEL.gz
| | Sample_series_id | GSE41662
| | Sample_series_id | GSE41664
| | Sample_data_row_count | 54675
| | |
|
GSM1021284 | GPL570 |
|
4007 lesional
|
Lesional skin biopsy from psoriasis patient
|
tissue type: Lesional skin
|
|
| Sample_geo_accession | GSM1021284
| | Sample_status | Public on Jan 28 2013
| | Sample_submission_date | Oct 17 2012
| | Sample_last_update_date | Jan 29 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The frozen biopsies were homogenized using a TissueRuptor and RNA extracted using the mirVana™ kit with on-column DNase treatment
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Total RNA was reverse-transcribed and amplified using the NuGen Ovation™ RNA amplification system V2 with Ovation™WB reagent. Amplified RNA was fragmented and labeled using the NuGen FL-Ovation™ cDNA Biotin Module V2. Amplification and labeling were performed on a Beckman-Coulter ArrayPlex.
| | Sample_hyb_protocol | Procedure used standard Affymetrix protocol.
| | Sample_scan_protocol | Procedure used standard Affymetrix protocol.
| | Sample_data_processing | Scans were imported into Rosetta Resolver and pre-processed using the 'Resolver Affymetrix Rosetta Intensity Profile Builder (saves reporters)' pipeline
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jeannette,,Bigler
| | Sample_contact_email | jbigler@amgen.com
| | Sample_contact_institute | Amgen, Inc.
| | Sample_contact_address | 1201 Amgen Court West
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98119
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1021nnn/GSM1021284/suppl/GSM1021284_skn55817.CEL.gz
| | Sample_series_id | GSE41662
| | Sample_series_id | GSE41664
| | Sample_data_row_count | 54675
| | |
|
GSM1021285 | GPL570 |
|
4007 non-lesional
|
Non-lesional skin biopsy from psoriasis patient
|
tissue type: Non-lesional skin
|
|
| Sample_geo_accession | GSM1021285
| | Sample_status | Public on Jan 28 2013
| | Sample_submission_date | Oct 17 2012
| | Sample_last_update_date | Jan 29 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The frozen biopsies were homogenized using a TissueRuptor and RNA extracted using the mirVana™ kit with on-column DNase treatment
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Total RNA was reverse-transcribed and amplified using the NuGen Ovation™ RNA amplification system V2 with Ovation™WB reagent. Amplified RNA was fragmented and labeled using the NuGen FL-Ovation™ cDNA Biotin Module V2. Amplification and labeling were performed on a Beckman-Coulter ArrayPlex.
| | Sample_hyb_protocol | Procedure used standard Affymetrix protocol.
| | Sample_scan_protocol | Procedure used standard Affymetrix protocol.
| | Sample_data_processing | Scans were imported into Rosetta Resolver and pre-processed using the 'Resolver Affymetrix Rosetta Intensity Profile Builder (saves reporters)' pipeline
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jeannette,,Bigler
| | Sample_contact_email | jbigler@amgen.com
| | Sample_contact_institute | Amgen, Inc.
| | Sample_contact_address | 1201 Amgen Court West
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98119
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1021nnn/GSM1021285/suppl/GSM1021285_skn55818.CEL.gz
| | Sample_series_id | GSE41662
| | Sample_series_id | GSE41664
| | Sample_data_row_count | 54675
| | |
|
GSM1021286 | GPL570 |
|
4006 lesional
|
Lesional skin biopsy from psoriasis patient
|
tissue type: Lesional skin
|
|
| Sample_geo_accession | GSM1021286
| | Sample_status | Public on Jan 28 2013
| | Sample_submission_date | Oct 17 2012
| | Sample_last_update_date | Jan 29 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The frozen biopsies were homogenized using a TissueRuptor and RNA extracted using the mirVana™ kit with on-column DNase treatment
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Total RNA was reverse-transcribed and amplified using the NuGen Ovation™ RNA amplification system V2 with Ovation™WB reagent. Amplified RNA was fragmented and labeled using the NuGen FL-Ovation™ cDNA Biotin Module V2. Amplification and labeling were performed on a Beckman-Coulter ArrayPlex.
| | Sample_hyb_protocol | Procedure used standard Affymetrix protocol.
| | Sample_scan_protocol | Procedure used standard Affymetrix protocol.
| | Sample_data_processing | Scans were imported into Rosetta Resolver and pre-processed using the 'Resolver Affymetrix Rosetta Intensity Profile Builder (saves reporters)' pipeline
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jeannette,,Bigler
| | Sample_contact_email | jbigler@amgen.com
| | Sample_contact_institute | Amgen, Inc.
| | Sample_contact_address | 1201 Amgen Court West
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98119
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1021nnn/GSM1021286/suppl/GSM1021286_skn56098.CEL.gz
| | Sample_series_id | GSE41662
| | Sample_series_id | GSE41664
| | Sample_data_row_count | 54675
| | |
|
GSM1021287 | GPL570 |
|
4006 non-lesional
|
Non-lesional skin biopsy from psoriasis patient
|
tissue type: Non-lesional skin
|
|
| Sample_geo_accession | GSM1021287
| | Sample_status | Public on Jan 28 2013
| | Sample_submission_date | Oct 17 2012
| | Sample_last_update_date | Jan 29 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The frozen biopsies were homogenized using a TissueRuptor and RNA extracted using the mirVana™ kit with on-column DNase treatment
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Total RNA was reverse-transcribed and amplified using the NuGen Ovation™ RNA amplification system V2 with Ovation™WB reagent. Amplified RNA was fragmented and labeled using the NuGen FL-Ovation™ cDNA Biotin Module V2. Amplification and labeling were performed on a Beckman-Coulter ArrayPlex.
| | Sample_hyb_protocol | Procedure used standard Affymetrix protocol.
| | Sample_scan_protocol | Procedure used standard Affymetrix protocol.
| | Sample_data_processing | Scans were imported into Rosetta Resolver and pre-processed using the 'Resolver Affymetrix Rosetta Intensity Profile Builder (saves reporters)' pipeline
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jeannette,,Bigler
| | Sample_contact_email | jbigler@amgen.com
| | Sample_contact_institute | Amgen, Inc.
| | Sample_contact_address | 1201 Amgen Court West
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98119
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1021nnn/GSM1021287/suppl/GSM1021287_skn56099.CEL.gz
| | Sample_series_id | GSE41662
| | Sample_series_id | GSE41664
| | Sample_data_row_count | 54675
| | |
|
GSM1021288 | GPL570 |
|
4013 lesional
|
Lesional skin biopsy from psoriasis patient
|
tissue type: Lesional skin
|
|
| Sample_geo_accession | GSM1021288
| | Sample_status | Public on Jan 28 2013
| | Sample_submission_date | Oct 17 2012
| | Sample_last_update_date | Jan 29 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The frozen biopsies were homogenized using a TissueRuptor and RNA extracted using the mirVana™ kit with on-column DNase treatment
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Total RNA was reverse-transcribed and amplified using the NuGen Ovation™ RNA amplification system V2 with Ovation™WB reagent. Amplified RNA was fragmented and labeled using the NuGen FL-Ovation™ cDNA Biotin Module V2. Amplification and labeling were performed on a Beckman-Coulter ArrayPlex.
| | Sample_hyb_protocol | Procedure used standard Affymetrix protocol.
| | Sample_scan_protocol | Procedure used standard Affymetrix protocol.
| | Sample_data_processing | Scans were imported into Rosetta Resolver and pre-processed using the 'Resolver Affymetrix Rosetta Intensity Profile Builder (saves reporters)' pipeline
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jeannette,,Bigler
| | Sample_contact_email | jbigler@amgen.com
| | Sample_contact_institute | Amgen, Inc.
| | Sample_contact_address | 1201 Amgen Court West
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98119
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1021nnn/GSM1021288/suppl/GSM1021288_skn56102.CEL.gz
| | Sample_series_id | GSE41662
| | Sample_series_id | GSE41664
| | Sample_data_row_count | 54675
| | |
|
GSM1021289 | GPL570 |
|
4013 non-lesional
|
Non-lesional skin biopsy from psoriasis patient
|
tissue type: Non-lesional skin
|
|
| Sample_geo_accession | GSM1021289
| | Sample_status | Public on Jan 28 2013
| | Sample_submission_date | Oct 17 2012
| | Sample_last_update_date | Jan 29 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The frozen biopsies were homogenized using a TissueRuptor and RNA extracted using the mirVana™ kit with on-column DNase treatment
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Total RNA was reverse-transcribed and amplified using the NuGen Ovation™ RNA amplification system V2 with Ovation™WB reagent. Amplified RNA was fragmented and labeled using the NuGen FL-Ovation™ cDNA Biotin Module V2. Amplification and labeling were performed on a Beckman-Coulter ArrayPlex.
| | Sample_hyb_protocol | Procedure used standard Affymetrix protocol.
| | Sample_scan_protocol | Procedure used standard Affymetrix protocol.
| | Sample_data_processing | Scans were imported into Rosetta Resolver and pre-processed using the 'Resolver Affymetrix Rosetta Intensity Profile Builder (saves reporters)' pipeline
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jeannette,,Bigler
| | Sample_contact_email | jbigler@amgen.com
| | Sample_contact_institute | Amgen, Inc.
| | Sample_contact_address | 1201 Amgen Court West
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98119
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1021nnn/GSM1021289/suppl/GSM1021289_skn56103.CEL.gz
| | Sample_series_id | GSE41662
| | Sample_series_id | GSE41664
| | Sample_data_row_count | 54675
| | |
|
GSM1021290 | GPL570 |
|
4008 lesional
|
Lesional skin biopsy from psoriasis patient
|
tissue type: Lesional skin
|
|
| Sample_geo_accession | GSM1021290
| | Sample_status | Public on Jan 28 2013
| | Sample_submission_date | Oct 17 2012
| | Sample_last_update_date | Jan 29 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The frozen biopsies were homogenized using a TissueRuptor and RNA extracted using the mirVana™ kit with on-column DNase treatment
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Total RNA was reverse-transcribed and amplified using the NuGen Ovation™ RNA amplification system V2 with Ovation™WB reagent. Amplified RNA was fragmented and labeled using the NuGen FL-Ovation™ cDNA Biotin Module V2. Amplification and labeling were performed on a Beckman-Coulter ArrayPlex.
| | Sample_hyb_protocol | Procedure used standard Affymetrix protocol.
| | Sample_scan_protocol | Procedure used standard Affymetrix protocol.
| | Sample_data_processing | Scans were imported into Rosetta Resolver and pre-processed using the 'Resolver Affymetrix Rosetta Intensity Profile Builder (saves reporters)' pipeline
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jeannette,,Bigler
| | Sample_contact_email | jbigler@amgen.com
| | Sample_contact_institute | Amgen, Inc.
| | Sample_contact_address | 1201 Amgen Court West
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98119
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1021nnn/GSM1021290/suppl/GSM1021290_skn56106.CEL.gz
| | Sample_series_id | GSE41662
| | Sample_series_id | GSE41664
| | Sample_data_row_count | 54675
| | |
|
GSM1021291 | GPL570 |
|
4008 non-lesional
|
Non-lesional skin biopsy from psoriasis patient
|
tissue type: Non-lesional skin
|
|
| Sample_geo_accession | GSM1021291
| | Sample_status | Public on Jan 28 2013
| | Sample_submission_date | Oct 17 2012
| | Sample_last_update_date | Jan 29 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The frozen biopsies were homogenized using a TissueRuptor and RNA extracted using the mirVana™ kit with on-column DNase treatment
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Total RNA was reverse-transcribed and amplified using the NuGen Ovation™ RNA amplification system V2 with Ovation™WB reagent. Amplified RNA was fragmented and labeled using the NuGen FL-Ovation™ cDNA Biotin Module V2. Amplification and labeling were performed on a Beckman-Coulter ArrayPlex.
| | Sample_hyb_protocol | Procedure used standard Affymetrix protocol.
| | Sample_scan_protocol | Procedure used standard Affymetrix protocol.
| | Sample_data_processing | Scans were imported into Rosetta Resolver and pre-processed using the 'Resolver Affymetrix Rosetta Intensity Profile Builder (saves reporters)' pipeline
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jeannette,,Bigler
| | Sample_contact_email | jbigler@amgen.com
| | Sample_contact_institute | Amgen, Inc.
| | Sample_contact_address | 1201 Amgen Court West
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98119
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1021nnn/GSM1021291/suppl/GSM1021291_skn56107.CEL.gz
| | Sample_series_id | GSE41662
| | Sample_series_id | GSE41664
| | Sample_data_row_count | 54675
| | |
|
GSM1021292 | GPL570 |
|
1156 lesional
|
Lesional skin biopsy from psoriasis patient
|
tissue type: Lesional skin
|
|
| Sample_geo_accession | GSM1021292
| | Sample_status | Public on Jan 28 2013
| | Sample_submission_date | Oct 17 2012
| | Sample_last_update_date | Jan 29 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The frozen biopsies were homogenized using a TissueRuptor and RNA extracted using the mirVana™ kit with on-column DNase treatment
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Total RNA was reverse-transcribed and amplified using the NuGen Ovation™ RNA amplification system V2 with Ovation™WB reagent. Amplified RNA was fragmented and labeled using the NuGen FL-Ovation™ cDNA Biotin Module V2. Amplification and labeling were performed on a Beckman-Coulter ArrayPlex.
| | Sample_hyb_protocol | Procedure used standard Affymetrix protocol.
| | Sample_scan_protocol | Procedure used standard Affymetrix protocol.
| | Sample_data_processing | Scans were imported into Rosetta Resolver and pre-processed using the 'Resolver Affymetrix Rosetta Intensity Profile Builder (saves reporters)' pipeline
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jeannette,,Bigler
| | Sample_contact_email | jbigler@amgen.com
| | Sample_contact_institute | Amgen, Inc.
| | Sample_contact_address | 1201 Amgen Court West
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98119
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1021nnn/GSM1021292/suppl/GSM1021292_skn58417.CEL.gz
| | Sample_series_id | GSE41662
| | Sample_series_id | GSE41664
| | Sample_data_row_count | 54675
| | |
|
GSM1021293 | GPL570 |
|
1156 non-lesional
|
Non-lesional skin biopsy from psoriasis patient
|
tissue type: Non-lesional skin
|
|
| Sample_geo_accession | GSM1021293
| | Sample_status | Public on Jan 28 2013
| | Sample_submission_date | Oct 17 2012
| | Sample_last_update_date | Jan 29 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The frozen biopsies were homogenized using a TissueRuptor and RNA extracted using the mirVana™ kit with on-column DNase treatment
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Total RNA was reverse-transcribed and amplified using the NuGen Ovation™ RNA amplification system V2 with Ovation™WB reagent. Amplified RNA was fragmented and labeled using the NuGen FL-Ovation™ cDNA Biotin Module V2. Amplification and labeling were performed on a Beckman-Coulter ArrayPlex.
| | Sample_hyb_protocol | Procedure used standard Affymetrix protocol.
| | Sample_scan_protocol | Procedure used standard Affymetrix protocol.
| | Sample_data_processing | Scans were imported into Rosetta Resolver and pre-processed using the 'Resolver Affymetrix Rosetta Intensity Profile Builder (saves reporters)' pipeline
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jeannette,,Bigler
| | Sample_contact_email | jbigler@amgen.com
| | Sample_contact_institute | Amgen, Inc.
| | Sample_contact_address | 1201 Amgen Court West
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98119
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1021nnn/GSM1021293/suppl/GSM1021293_skn58418.CEL.gz
| | Sample_series_id | GSE41662
| | Sample_series_id | GSE41664
| | Sample_data_row_count | 54675
| | |
|
GSM1021294 | GPL570 |
|
4016 lesional
|
Lesional skin biopsy from psoriasis patient
|
tissue type: Lesional skin
|
|
| Sample_geo_accession | GSM1021294
| | Sample_status | Public on Jan 28 2013
| | Sample_submission_date | Oct 17 2012
| | Sample_last_update_date | Jan 29 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The frozen biopsies were homogenized using a TissueRuptor and RNA extracted using the mirVana™ kit with on-column DNase treatment
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Total RNA was reverse-transcribed and amplified using the NuGen Ovation™ RNA amplification system V2 with Ovation™WB reagent. Amplified RNA was fragmented and labeled using the NuGen FL-Ovation™ cDNA Biotin Module V2. Amplification and labeling were performed on a Beckman-Coulter ArrayPlex.
| | Sample_hyb_protocol | Procedure used standard Affymetrix protocol.
| | Sample_scan_protocol | Procedure used standard Affymetrix protocol.
| | Sample_data_processing | Scans were imported into Rosetta Resolver and pre-processed using the 'Resolver Affymetrix Rosetta Intensity Profile Builder (saves reporters)' pipeline
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jeannette,,Bigler
| | Sample_contact_email | jbigler@amgen.com
| | Sample_contact_institute | Amgen, Inc.
| | Sample_contact_address | 1201 Amgen Court West
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98119
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1021nnn/GSM1021294/suppl/GSM1021294_skn58421.CEL.gz
| | Sample_series_id | GSE41662
| | Sample_series_id | GSE41664
| | Sample_data_row_count | 54675
| | |
|
GSM1021295 | GPL570 |
|
4016 non-lesional
|
Non-lesional skin biopsy from psoriasis patient
|
tissue type: Non-lesional skin
|
|
| Sample_geo_accession | GSM1021295
| | Sample_status | Public on Jan 28 2013
| | Sample_submission_date | Oct 17 2012
| | Sample_last_update_date | Jan 29 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The frozen biopsies were homogenized using a TissueRuptor and RNA extracted using the mirVana™ kit with on-column DNase treatment
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Total RNA was reverse-transcribed and amplified using the NuGen Ovation™ RNA amplification system V2 with Ovation™WB reagent. Amplified RNA was fragmented and labeled using the NuGen FL-Ovation™ cDNA Biotin Module V2. Amplification and labeling were performed on a Beckman-Coulter ArrayPlex.
| | Sample_hyb_protocol | Procedure used standard Affymetrix protocol.
| | Sample_scan_protocol | Procedure used standard Affymetrix protocol.
| | Sample_data_processing | Scans were imported into Rosetta Resolver and pre-processed using the 'Resolver Affymetrix Rosetta Intensity Profile Builder (saves reporters)' pipeline
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jeannette,,Bigler
| | Sample_contact_email | jbigler@amgen.com
| | Sample_contact_institute | Amgen, Inc.
| | Sample_contact_address | 1201 Amgen Court West
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98119
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1021nnn/GSM1021295/suppl/GSM1021295_skn58422.CEL.gz
| | Sample_series_id | GSE41662
| | Sample_series_id | GSE41664
| | Sample_data_row_count | 54675
| | |
|
| |
| |
Make groups for comparisons |
(2 groups will be compared at a time) |
|
| Select GSMs and click on "Add groups" |
Enter the group name here: |
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