Search results for the GEO ID: GSE41663  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM1021296 | GPL570 |
|
PsOEt-10-NL
|
Non-lesional skin biopsy from psoriasis patient, Pre-dose
|
tissue type: Non-lesional skin
time: Pre-dose
|
A_NL_Time0 in GSE11903 (GSM300749)
|
| Sample_geo_accession | GSM1021296
| | Sample_status | Public on Jan 28 2013
| | Sample_submission_date | Oct 17 2012
| | Sample_last_update_date | Jan 29 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extraction.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Total RNA was reverse-transcribed and amplified using the NuGen Ovation™ RNA amplification system V2 with Ovation™WB reagent. Amplified RNA was fragmented and labeled using the NuGen FL-Ovation™ cDNA Biotin Module V2. Amplification and labeling were performed on a Beckman-Coulter ArrayPlex.
| | Sample_hyb_protocol | Procedure used standard Affymetrix protocol.
| | Sample_scan_protocol | Procedure used standard Affymetrix protocol.
| | Sample_data_processing | Scans were imported into Rosetta Resolver and pre-processed using the 'Resolver Affymetrix Rosetta Intensity Profile Builder (saves reporters)' pipeline
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jeannette,,Bigler
| | Sample_contact_email | jbigler@amgen.com
| | Sample_contact_institute | Amgen, Inc.
| | Sample_contact_address | 1201 Amgen Court West
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98119
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1021nnn/GSM1021296/suppl/GSM1021296_skn48421.CEL.gz
| | Sample_series_id | GSE41663
| | Sample_series_id | GSE41664
| | Sample_data_row_count | 54675
| | |
|
GSM1021297 | GPL570 |
|
PsOEt-10-LS
|
Lesional skin biopsy from psoriasis patient, Pre-dose
|
tissue type: Lesional skin
time: Pre-dose
|
A_LS_Time0 in GSE11903 (GSM300750)
|
| Sample_geo_accession | GSM1021297
| | Sample_status | Public on Jan 28 2013
| | Sample_submission_date | Oct 17 2012
| | Sample_last_update_date | Jan 29 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extraction.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Total RNA was reverse-transcribed and amplified using the NuGen Ovation™ RNA amplification system V2 with Ovation™WB reagent. Amplified RNA was fragmented and labeled using the NuGen FL-Ovation™ cDNA Biotin Module V2. Amplification and labeling were performed on a Beckman-Coulter ArrayPlex.
| | Sample_hyb_protocol | Procedure used standard Affymetrix protocol.
| | Sample_scan_protocol | Procedure used standard Affymetrix protocol.
| | Sample_data_processing | Scans were imported into Rosetta Resolver and pre-processed using the 'Resolver Affymetrix Rosetta Intensity Profile Builder (saves reporters)' pipeline
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jeannette,,Bigler
| | Sample_contact_email | jbigler@amgen.com
| | Sample_contact_institute | Amgen, Inc.
| | Sample_contact_address | 1201 Amgen Court West
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98119
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1021nnn/GSM1021297/suppl/GSM1021297_skn48422.CEL.gz
| | Sample_series_id | GSE41663
| | Sample_series_id | GSE41664
| | Sample_data_row_count | 54675
| | |
|
GSM1021298 | GPL570 |
|
PsOEt-10-Week 1
|
Lesional skin biopsy from psoriasis patient, Week1_etanercept
|
tissue type: Lesional skin
time: Week1_etanercept
|
A_LS_Wk1 in GSE11903 (GSM300751)
|
| Sample_geo_accession | GSM1021298
| | Sample_status | Public on Jan 28 2013
| | Sample_submission_date | Oct 17 2012
| | Sample_last_update_date | Jan 29 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extraction.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Total RNA was reverse-transcribed and amplified using the NuGen Ovation™ RNA amplification system V2 with Ovation™WB reagent. Amplified RNA was fragmented and labeled using the NuGen FL-Ovation™ cDNA Biotin Module V2. Amplification and labeling were performed on a Beckman-Coulter ArrayPlex.
| | Sample_hyb_protocol | Procedure used standard Affymetrix protocol.
| | Sample_scan_protocol | Procedure used standard Affymetrix protocol.
| | Sample_data_processing | Scans were imported into Rosetta Resolver and pre-processed using the 'Resolver Affymetrix Rosetta Intensity Profile Builder (saves reporters)' pipeline
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jeannette,,Bigler
| | Sample_contact_email | jbigler@amgen.com
| | Sample_contact_institute | Amgen, Inc.
| | Sample_contact_address | 1201 Amgen Court West
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98119
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1021nnn/GSM1021298/suppl/GSM1021298_skn48423.CEL.gz
| | Sample_series_id | GSE41663
| | Sample_series_id | GSE41664
| | Sample_data_row_count | 54675
| | |
|
GSM1021299 | GPL570 |
|
PsOEt-10-Week 2
|
Lesional skin biopsy from psoriasis patient, Week2_etanercept
|
tissue type: Lesional skin
time: Week2_etanercept
|
A_LS_Wk2 in GSE11903 (GSM300752)
|
| Sample_geo_accession | GSM1021299
| | Sample_status | Public on Jan 28 2013
| | Sample_submission_date | Oct 17 2012
| | Sample_last_update_date | Jan 29 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extraction.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Total RNA was reverse-transcribed and amplified using the NuGen Ovation™ RNA amplification system V2 with Ovation™WB reagent. Amplified RNA was fragmented and labeled using the NuGen FL-Ovation™ cDNA Biotin Module V2. Amplification and labeling were performed on a Beckman-Coulter ArrayPlex.
| | Sample_hyb_protocol | Procedure used standard Affymetrix protocol.
| | Sample_scan_protocol | Procedure used standard Affymetrix protocol.
| | Sample_data_processing | Scans were imported into Rosetta Resolver and pre-processed using the 'Resolver Affymetrix Rosetta Intensity Profile Builder (saves reporters)' pipeline
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jeannette,,Bigler
| | Sample_contact_email | jbigler@amgen.com
| | Sample_contact_institute | Amgen, Inc.
| | Sample_contact_address | 1201 Amgen Court West
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98119
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1021nnn/GSM1021299/suppl/GSM1021299_skn48424.CEL.gz
| | Sample_series_id | GSE41663
| | Sample_series_id | GSE41664
| | Sample_data_row_count | 54675
| | |
|
GSM1021300 | GPL570 |
|
PsOEt-10-Week 4
|
Lesional skin biopsy from psoriasis patient, Week4_etanercept
|
tissue type: Lesional skin
time: Week4_etanercept
|
A_LS_Wk4 in GSE11903 (GSM300753)
|
| Sample_geo_accession | GSM1021300
| | Sample_status | Public on Jan 28 2013
| | Sample_submission_date | Oct 17 2012
| | Sample_last_update_date | Jan 29 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extraction.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Total RNA was reverse-transcribed and amplified using the NuGen Ovation™ RNA amplification system V2 with Ovation™WB reagent. Amplified RNA was fragmented and labeled using the NuGen FL-Ovation™ cDNA Biotin Module V2. Amplification and labeling were performed on a Beckman-Coulter ArrayPlex.
| | Sample_hyb_protocol | Procedure used standard Affymetrix protocol.
| | Sample_scan_protocol | Procedure used standard Affymetrix protocol.
| | Sample_data_processing | Scans were imported into Rosetta Resolver and pre-processed using the 'Resolver Affymetrix Rosetta Intensity Profile Builder (saves reporters)' pipeline
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jeannette,,Bigler
| | Sample_contact_email | jbigler@amgen.com
| | Sample_contact_institute | Amgen, Inc.
| | Sample_contact_address | 1201 Amgen Court West
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98119
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1021nnn/GSM1021300/suppl/GSM1021300_skn48425.CEL.gz
| | Sample_series_id | GSE41663
| | Sample_series_id | GSE41664
| | Sample_data_row_count | 54675
| | |
|
GSM1021301 | GPL570 |
|
PsOEt-11-NL
|
Non-lesional skin biopsy from psoriasis patient, Pre-dose
|
tissue type: Non-lesional skin
time: Pre-dose
|
B_NL_Time0 in GSE11903 (GSM300755)
|
| Sample_geo_accession | GSM1021301
| | Sample_status | Public on Jan 28 2013
| | Sample_submission_date | Oct 17 2012
| | Sample_last_update_date | Jan 29 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extraction.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Total RNA was reverse-transcribed and amplified using the NuGen Ovation™ RNA amplification system V2 with Ovation™WB reagent. Amplified RNA was fragmented and labeled using the NuGen FL-Ovation™ cDNA Biotin Module V2. Amplification and labeling were performed on a Beckman-Coulter ArrayPlex.
| | Sample_hyb_protocol | Procedure used standard Affymetrix protocol.
| | Sample_scan_protocol | Procedure used standard Affymetrix protocol.
| | Sample_data_processing | Scans were imported into Rosetta Resolver and pre-processed using the 'Resolver Affymetrix Rosetta Intensity Profile Builder (saves reporters)' pipeline
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jeannette,,Bigler
| | Sample_contact_email | jbigler@amgen.com
| | Sample_contact_institute | Amgen, Inc.
| | Sample_contact_address | 1201 Amgen Court West
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98119
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1021nnn/GSM1021301/suppl/GSM1021301_skn48427.CEL.gz
| | Sample_series_id | GSE41663
| | Sample_series_id | GSE41664
| | Sample_data_row_count | 54675
| | |
|
GSM1021302 | GPL570 |
|
PsOEt-11-LS
|
Lesional skin biopsy from psoriasis patient, Pre-dose
|
tissue type: Lesional skin
time: Pre-dose
|
B_LS_Time0 in GSE11903 (GSM300756)
|
| Sample_geo_accession | GSM1021302
| | Sample_status | Public on Jan 28 2013
| | Sample_submission_date | Oct 17 2012
| | Sample_last_update_date | Jan 29 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extraction.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Total RNA was reverse-transcribed and amplified using the NuGen Ovation™ RNA amplification system V2 with Ovation™WB reagent. Amplified RNA was fragmented and labeled using the NuGen FL-Ovation™ cDNA Biotin Module V2. Amplification and labeling were performed on a Beckman-Coulter ArrayPlex.
| | Sample_hyb_protocol | Procedure used standard Affymetrix protocol.
| | Sample_scan_protocol | Procedure used standard Affymetrix protocol.
| | Sample_data_processing | Scans were imported into Rosetta Resolver and pre-processed using the 'Resolver Affymetrix Rosetta Intensity Profile Builder (saves reporters)' pipeline
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jeannette,,Bigler
| | Sample_contact_email | jbigler@amgen.com
| | Sample_contact_institute | Amgen, Inc.
| | Sample_contact_address | 1201 Amgen Court West
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98119
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1021nnn/GSM1021302/suppl/GSM1021302_skn48428.CEL.gz
| | Sample_series_id | GSE41663
| | Sample_series_id | GSE41664
| | Sample_data_row_count | 54675
| | |
|
GSM1021303 | GPL570 |
|
PsOEt-11-Week 1
|
Lesional skin biopsy from psoriasis patient, Week1_etanercept
|
tissue type: Lesional skin
time: Week1_etanercept
|
B_LS_Wk1 in GSE11903 (GSM300757)
|
| Sample_geo_accession | GSM1021303
| | Sample_status | Public on Jan 28 2013
| | Sample_submission_date | Oct 17 2012
| | Sample_last_update_date | Jan 29 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extraction.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Total RNA was reverse-transcribed and amplified using the NuGen Ovation™ RNA amplification system V2 with Ovation™WB reagent. Amplified RNA was fragmented and labeled using the NuGen FL-Ovation™ cDNA Biotin Module V2. Amplification and labeling were performed on a Beckman-Coulter ArrayPlex.
| | Sample_hyb_protocol | Procedure used standard Affymetrix protocol.
| | Sample_scan_protocol | Procedure used standard Affymetrix protocol.
| | Sample_data_processing | Scans were imported into Rosetta Resolver and pre-processed using the 'Resolver Affymetrix Rosetta Intensity Profile Builder (saves reporters)' pipeline
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jeannette,,Bigler
| | Sample_contact_email | jbigler@amgen.com
| | Sample_contact_institute | Amgen, Inc.
| | Sample_contact_address | 1201 Amgen Court West
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98119
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1021nnn/GSM1021303/suppl/GSM1021303_skn48429.CEL.gz
| | Sample_series_id | GSE41663
| | Sample_series_id | GSE41664
| | Sample_data_row_count | 54675
| | |
|
GSM1021304 | GPL570 |
|
PsOEt-11-Week 2
|
Lesional skin biopsy from psoriasis patient, Week2_etanercept
|
tissue type: Lesional skin
time: Week2_etanercept
|
B_LS_Wk2 in GSE11903 (GSM300758)
|
| Sample_geo_accession | GSM1021304
| | Sample_status | Public on Jan 28 2013
| | Sample_submission_date | Oct 17 2012
| | Sample_last_update_date | Jan 29 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extraction.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Total RNA was reverse-transcribed and amplified using the NuGen Ovation™ RNA amplification system V2 with Ovation™WB reagent. Amplified RNA was fragmented and labeled using the NuGen FL-Ovation™ cDNA Biotin Module V2. Amplification and labeling were performed on a Beckman-Coulter ArrayPlex.
| | Sample_hyb_protocol | Procedure used standard Affymetrix protocol.
| | Sample_scan_protocol | Procedure used standard Affymetrix protocol.
| | Sample_data_processing | Scans were imported into Rosetta Resolver and pre-processed using the 'Resolver Affymetrix Rosetta Intensity Profile Builder (saves reporters)' pipeline
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jeannette,,Bigler
| | Sample_contact_email | jbigler@amgen.com
| | Sample_contact_institute | Amgen, Inc.
| | Sample_contact_address | 1201 Amgen Court West
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98119
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1021nnn/GSM1021304/suppl/GSM1021304_skn48430.CEL.gz
| | Sample_series_id | GSE41663
| | Sample_series_id | GSE41664
| | Sample_data_row_count | 54675
| | |
|
GSM1021305 | GPL570 |
|
PsOEt-11-Week 4
|
Lesional skin biopsy from psoriasis patient, Week4_etanercept
|
tissue type: Lesional skin
time: Week4_etanercept
|
B_LS_Wk4 in GSE11903 (GSM300759)
|
| Sample_geo_accession | GSM1021305
| | Sample_status | Public on Jan 28 2013
| | Sample_submission_date | Oct 17 2012
| | Sample_last_update_date | Jan 29 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extraction.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Total RNA was reverse-transcribed and amplified using the NuGen Ovation™ RNA amplification system V2 with Ovation™WB reagent. Amplified RNA was fragmented and labeled using the NuGen FL-Ovation™ cDNA Biotin Module V2. Amplification and labeling were performed on a Beckman-Coulter ArrayPlex.
| | Sample_hyb_protocol | Procedure used standard Affymetrix protocol.
| | Sample_scan_protocol | Procedure used standard Affymetrix protocol.
| | Sample_data_processing | Scans were imported into Rosetta Resolver and pre-processed using the 'Resolver Affymetrix Rosetta Intensity Profile Builder (saves reporters)' pipeline
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jeannette,,Bigler
| | Sample_contact_email | jbigler@amgen.com
| | Sample_contact_institute | Amgen, Inc.
| | Sample_contact_address | 1201 Amgen Court West
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98119
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1021nnn/GSM1021305/suppl/GSM1021305_skn48431.CEL.gz
| | Sample_series_id | GSE41663
| | Sample_series_id | GSE41664
| | Sample_data_row_count | 54675
| | |
|
GSM1021306 | GPL570 |
|
PsOEt-12-NL
|
Non-lesional skin biopsy from psoriasis patient, Pre-dose
|
tissue type: Non-lesional skin
time: Pre-dose
|
C_NL_Time0 in GSE11903 (GSM300761)
|
| Sample_geo_accession | GSM1021306
| | Sample_status | Public on Jan 28 2013
| | Sample_submission_date | Oct 17 2012
| | Sample_last_update_date | Jan 29 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extraction.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Total RNA was reverse-transcribed and amplified using the NuGen Ovation™ RNA amplification system V2 with Ovation™WB reagent. Amplified RNA was fragmented and labeled using the NuGen FL-Ovation™ cDNA Biotin Module V2. Amplification and labeling were performed on a Beckman-Coulter ArrayPlex.
| | Sample_hyb_protocol | Procedure used standard Affymetrix protocol.
| | Sample_scan_protocol | Procedure used standard Affymetrix protocol.
| | Sample_data_processing | Scans were imported into Rosetta Resolver and pre-processed using the 'Resolver Affymetrix Rosetta Intensity Profile Builder (saves reporters)' pipeline
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jeannette,,Bigler
| | Sample_contact_email | jbigler@amgen.com
| | Sample_contact_institute | Amgen, Inc.
| | Sample_contact_address | 1201 Amgen Court West
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98119
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1021nnn/GSM1021306/suppl/GSM1021306_skn48432.CEL.gz
| | Sample_series_id | GSE41663
| | Sample_series_id | GSE41664
| | Sample_data_row_count | 54675
| | |
|
GSM1021307 | GPL570 |
|
PsOEt-12-LS
|
Lesional skin biopsy from psoriasis patient, Pre-dose
|
tissue type: Lesional skin
time: Pre-dose
|
C_LS_Time0 in GSE11903 (GSM300762)
|
| Sample_geo_accession | GSM1021307
| | Sample_status | Public on Jan 28 2013
| | Sample_submission_date | Oct 17 2012
| | Sample_last_update_date | Jan 29 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extraction.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Total RNA was reverse-transcribed and amplified using the NuGen Ovation™ RNA amplification system V2 with Ovation™WB reagent. Amplified RNA was fragmented and labeled using the NuGen FL-Ovation™ cDNA Biotin Module V2. Amplification and labeling were performed on a Beckman-Coulter ArrayPlex.
| | Sample_hyb_protocol | Procedure used standard Affymetrix protocol.
| | Sample_scan_protocol | Procedure used standard Affymetrix protocol.
| | Sample_data_processing | Scans were imported into Rosetta Resolver and pre-processed using the 'Resolver Affymetrix Rosetta Intensity Profile Builder (saves reporters)' pipeline
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jeannette,,Bigler
| | Sample_contact_email | jbigler@amgen.com
| | Sample_contact_institute | Amgen, Inc.
| | Sample_contact_address | 1201 Amgen Court West
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98119
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1021nnn/GSM1021307/suppl/GSM1021307_skn48433.CEL.gz
| | Sample_series_id | GSE41663
| | Sample_series_id | GSE41664
| | Sample_data_row_count | 54675
| | |
|
GSM1021308 | GPL570 |
|
PsOEt-12-Week 1
|
Lesional skin biopsy from psoriasis patient, Week1_etanercept
|
tissue type: Lesional skin
time: Week1_etanercept
|
C_LS_Wk1 in GSE11903 (GSM300763)
|
| Sample_geo_accession | GSM1021308
| | Sample_status | Public on Jan 28 2013
| | Sample_submission_date | Oct 17 2012
| | Sample_last_update_date | Jan 29 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extraction.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Total RNA was reverse-transcribed and amplified using the NuGen Ovation™ RNA amplification system V2 with Ovation™WB reagent. Amplified RNA was fragmented and labeled using the NuGen FL-Ovation™ cDNA Biotin Module V2. Amplification and labeling were performed on a Beckman-Coulter ArrayPlex.
| | Sample_hyb_protocol | Procedure used standard Affymetrix protocol.
| | Sample_scan_protocol | Procedure used standard Affymetrix protocol.
| | Sample_data_processing | Scans were imported into Rosetta Resolver and pre-processed using the 'Resolver Affymetrix Rosetta Intensity Profile Builder (saves reporters)' pipeline
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jeannette,,Bigler
| | Sample_contact_email | jbigler@amgen.com
| | Sample_contact_institute | Amgen, Inc.
| | Sample_contact_address | 1201 Amgen Court West
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98119
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1021nnn/GSM1021308/suppl/GSM1021308_skn48434.CEL.gz
| | Sample_series_id | GSE41663
| | Sample_series_id | GSE41664
| | Sample_data_row_count | 54675
| | |
|
GSM1021309 | GPL570 |
|
PsOEt-12-Week 2
|
Lesional skin biopsy from psoriasis patient, Week2_etanercept
|
tissue type: Lesional skin
time: Week2_etanercept
|
C_LS_Wk2 in GSE11903 (GSM300764)
|
| Sample_geo_accession | GSM1021309
| | Sample_status | Public on Jan 28 2013
| | Sample_submission_date | Oct 17 2012
| | Sample_last_update_date | Jan 29 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extraction.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Total RNA was reverse-transcribed and amplified using the NuGen Ovation™ RNA amplification system V2 with Ovation™WB reagent. Amplified RNA was fragmented and labeled using the NuGen FL-Ovation™ cDNA Biotin Module V2. Amplification and labeling were performed on a Beckman-Coulter ArrayPlex.
| | Sample_hyb_protocol | Procedure used standard Affymetrix protocol.
| | Sample_scan_protocol | Procedure used standard Affymetrix protocol.
| | Sample_data_processing | Scans were imported into Rosetta Resolver and pre-processed using the 'Resolver Affymetrix Rosetta Intensity Profile Builder (saves reporters)' pipeline
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jeannette,,Bigler
| | Sample_contact_email | jbigler@amgen.com
| | Sample_contact_institute | Amgen, Inc.
| | Sample_contact_address | 1201 Amgen Court West
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98119
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1021nnn/GSM1021309/suppl/GSM1021309_skn48435.CEL.gz
| | Sample_series_id | GSE41663
| | Sample_series_id | GSE41664
| | Sample_data_row_count | 54675
| | |
|
GSM1021310 | GPL570 |
|
PsOEt-12-Week 4
|
Lesional skin biopsy from psoriasis patient, Week4_etanercept
|
tissue type: Lesional skin
time: Week4_etanercept
|
C_LS_Wk4 in GSE11903 (GSM300765)
|
| Sample_geo_accession | GSM1021310
| | Sample_status | Public on Jan 28 2013
| | Sample_submission_date | Oct 17 2012
| | Sample_last_update_date | Jan 29 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extraction.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Total RNA was reverse-transcribed and amplified using the NuGen Ovation™ RNA amplification system V2 with Ovation™WB reagent. Amplified RNA was fragmented and labeled using the NuGen FL-Ovation™ cDNA Biotin Module V2. Amplification and labeling were performed on a Beckman-Coulter ArrayPlex.
| | Sample_hyb_protocol | Procedure used standard Affymetrix protocol.
| | Sample_scan_protocol | Procedure used standard Affymetrix protocol.
| | Sample_data_processing | Scans were imported into Rosetta Resolver and pre-processed using the 'Resolver Affymetrix Rosetta Intensity Profile Builder (saves reporters)' pipeline
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jeannette,,Bigler
| | Sample_contact_email | jbigler@amgen.com
| | Sample_contact_institute | Amgen, Inc.
| | Sample_contact_address | 1201 Amgen Court West
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98119
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1021nnn/GSM1021310/suppl/GSM1021310_skn48436.CEL.gz
| | Sample_series_id | GSE41663
| | Sample_series_id | GSE41664
| | Sample_data_row_count | 54675
| | |
|
GSM1021311 | GPL570 |
|
PsOEt-13-NL
|
Non-lesional skin biopsy from psoriasis patient, Pre-dose
|
tissue type: Non-lesional skin
time: Pre-dose
|
D_NL_Time0 in GSE11903 (GSM300767)
|
| Sample_geo_accession | GSM1021311
| | Sample_status | Public on Jan 28 2013
| | Sample_submission_date | Oct 17 2012
| | Sample_last_update_date | Jan 29 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extraction.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Total RNA was reverse-transcribed and amplified using the NuGen Ovation™ RNA amplification system V2 with Ovation™WB reagent. Amplified RNA was fragmented and labeled using the NuGen FL-Ovation™ cDNA Biotin Module V2. Amplification and labeling were performed on a Beckman-Coulter ArrayPlex.
| | Sample_hyb_protocol | Procedure used standard Affymetrix protocol.
| | Sample_scan_protocol | Procedure used standard Affymetrix protocol.
| | Sample_data_processing | Scans were imported into Rosetta Resolver and pre-processed using the 'Resolver Affymetrix Rosetta Intensity Profile Builder (saves reporters)' pipeline
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jeannette,,Bigler
| | Sample_contact_email | jbigler@amgen.com
| | Sample_contact_institute | Amgen, Inc.
| | Sample_contact_address | 1201 Amgen Court West
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98119
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1021nnn/GSM1021311/suppl/GSM1021311_skn48437.CEL.gz
| | Sample_series_id | GSE41663
| | Sample_series_id | GSE41664
| | Sample_data_row_count | 54675
| | |
|
GSM1021312 | GPL570 |
|
PsOEt-13-LS
|
Lesional skin biopsy from psoriasis patient, Pre-dose
|
tissue type: Lesional skin
time: Pre-dose
|
D_LS_Time0 in GSE11903 (GSM300768)
|
| Sample_geo_accession | GSM1021312
| | Sample_status | Public on Jan 28 2013
| | Sample_submission_date | Oct 17 2012
| | Sample_last_update_date | Jan 29 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extraction.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Total RNA was reverse-transcribed and amplified using the NuGen Ovation™ RNA amplification system V2 with Ovation™WB reagent. Amplified RNA was fragmented and labeled using the NuGen FL-Ovation™ cDNA Biotin Module V2. Amplification and labeling were performed on a Beckman-Coulter ArrayPlex.
| | Sample_hyb_protocol | Procedure used standard Affymetrix protocol.
| | Sample_scan_protocol | Procedure used standard Affymetrix protocol.
| | Sample_data_processing | Scans were imported into Rosetta Resolver and pre-processed using the 'Resolver Affymetrix Rosetta Intensity Profile Builder (saves reporters)' pipeline
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jeannette,,Bigler
| | Sample_contact_email | jbigler@amgen.com
| | Sample_contact_institute | Amgen, Inc.
| | Sample_contact_address | 1201 Amgen Court West
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98119
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1021nnn/GSM1021312/suppl/GSM1021312_skn48438.CEL.gz
| | Sample_series_id | GSE41663
| | Sample_series_id | GSE41664
| | Sample_data_row_count | 54675
| | |
|
GSM1021313 | GPL570 |
|
PsOEt-13-Week 1
|
Lesional skin biopsy from psoriasis patient, Week1_etanercept
|
tissue type: Lesional skin
time: Week1_etanercept
|
D_LS_Wk1 in GSE11903 (GSM300769)
|
| Sample_geo_accession | GSM1021313
| | Sample_status | Public on Jan 28 2013
| | Sample_submission_date | Oct 17 2012
| | Sample_last_update_date | Jan 29 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extraction.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Total RNA was reverse-transcribed and amplified using the NuGen Ovation™ RNA amplification system V2 with Ovation™WB reagent. Amplified RNA was fragmented and labeled using the NuGen FL-Ovation™ cDNA Biotin Module V2. Amplification and labeling were performed on a Beckman-Coulter ArrayPlex.
| | Sample_hyb_protocol | Procedure used standard Affymetrix protocol.
| | Sample_scan_protocol | Procedure used standard Affymetrix protocol.
| | Sample_data_processing | Scans were imported into Rosetta Resolver and pre-processed using the 'Resolver Affymetrix Rosetta Intensity Profile Builder (saves reporters)' pipeline
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jeannette,,Bigler
| | Sample_contact_email | jbigler@amgen.com
| | Sample_contact_institute | Amgen, Inc.
| | Sample_contact_address | 1201 Amgen Court West
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98119
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1021nnn/GSM1021313/suppl/GSM1021313_skn48439.CEL.gz
| | Sample_series_id | GSE41663
| | Sample_series_id | GSE41664
| | Sample_data_row_count | 54675
| | |
|
GSM1021314 | GPL570 |
|
PsOEt-13-Week 2
|
Lesional skin biopsy from psoriasis patient, Week2_etanercept
|
tissue type: Lesional skin
time: Week2_etanercept
|
D_LS_Wk2 in GSE11903 (GSM300770)
|
| Sample_geo_accession | GSM1021314
| | Sample_status | Public on Jan 28 2013
| | Sample_submission_date | Oct 17 2012
| | Sample_last_update_date | Jan 29 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extraction.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Total RNA was reverse-transcribed and amplified using the NuGen Ovation™ RNA amplification system V2 with Ovation™WB reagent. Amplified RNA was fragmented and labeled using the NuGen FL-Ovation™ cDNA Biotin Module V2. Amplification and labeling were performed on a Beckman-Coulter ArrayPlex.
| | Sample_hyb_protocol | Procedure used standard Affymetrix protocol.
| | Sample_scan_protocol | Procedure used standard Affymetrix protocol.
| | Sample_data_processing | Scans were imported into Rosetta Resolver and pre-processed using the 'Resolver Affymetrix Rosetta Intensity Profile Builder (saves reporters)' pipeline
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jeannette,,Bigler
| | Sample_contact_email | jbigler@amgen.com
| | Sample_contact_institute | Amgen, Inc.
| | Sample_contact_address | 1201 Amgen Court West
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98119
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1021nnn/GSM1021314/suppl/GSM1021314_skn48440.CEL.gz
| | Sample_series_id | GSE41663
| | Sample_series_id | GSE41664
| | Sample_data_row_count | 54675
| | |
|
GSM1021315 | GPL570 |
|
PsOEt-13-Week 4
|
Lesional skin biopsy from psoriasis patient, Week4_etanercept
|
tissue type: Lesional skin
time: Week4_etanercept
|
D_LS_Wk4 in GSE11903 (GSM300771)
|
| Sample_geo_accession | GSM1021315
| | Sample_status | Public on Jan 28 2013
| | Sample_submission_date | Oct 17 2012
| | Sample_last_update_date | Jan 29 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extraction.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Total RNA was reverse-transcribed and amplified using the NuGen Ovation™ RNA amplification system V2 with Ovation™WB reagent. Amplified RNA was fragmented and labeled using the NuGen FL-Ovation™ cDNA Biotin Module V2. Amplification and labeling were performed on a Beckman-Coulter ArrayPlex.
| | Sample_hyb_protocol | Procedure used standard Affymetrix protocol.
| | Sample_scan_protocol | Procedure used standard Affymetrix protocol.
| | Sample_data_processing | Scans were imported into Rosetta Resolver and pre-processed using the 'Resolver Affymetrix Rosetta Intensity Profile Builder (saves reporters)' pipeline
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jeannette,,Bigler
| | Sample_contact_email | jbigler@amgen.com
| | Sample_contact_institute | Amgen, Inc.
| | Sample_contact_address | 1201 Amgen Court West
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98119
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1021nnn/GSM1021315/suppl/GSM1021315_skn48441.CEL.gz
| | Sample_series_id | GSE41663
| | Sample_series_id | GSE41664
| | Sample_data_row_count | 54675
| | |
|
GSM1021316 | GPL570 |
|
PsOEt-14-NL
|
Non-lesional skin biopsy from psoriasis patient, Pre-dose
|
tissue type: Non-lesional skin
time: Pre-dose
|
E_NL_Time0 in GSE11903 (GSM300773)
|
| Sample_geo_accession | GSM1021316
| | Sample_status | Public on Jan 28 2013
| | Sample_submission_date | Oct 17 2012
| | Sample_last_update_date | Jan 29 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extraction.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Total RNA was reverse-transcribed and amplified using the NuGen Ovation™ RNA amplification system V2 with Ovation™WB reagent. Amplified RNA was fragmented and labeled using the NuGen FL-Ovation™ cDNA Biotin Module V2. Amplification and labeling were performed on a Beckman-Coulter ArrayPlex.
| | Sample_hyb_protocol | Procedure used standard Affymetrix protocol.
| | Sample_scan_protocol | Procedure used standard Affymetrix protocol.
| | Sample_data_processing | Scans were imported into Rosetta Resolver and pre-processed using the 'Resolver Affymetrix Rosetta Intensity Profile Builder (saves reporters)' pipeline
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jeannette,,Bigler
| | Sample_contact_email | jbigler@amgen.com
| | Sample_contact_institute | Amgen, Inc.
| | Sample_contact_address | 1201 Amgen Court West
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98119
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1021nnn/GSM1021316/suppl/GSM1021316_skn48442.CEL.gz
| | Sample_series_id | GSE41663
| | Sample_series_id | GSE41664
| | Sample_data_row_count | 54675
| | |
|
GSM1021317 | GPL570 |
|
PsOEt-14-LS
|
Lesional skin biopsy from psoriasis patient, Pre-dose
|
tissue type: Lesional skin
time: Pre-dose
|
E_LS_Time0 in GSE11903 (GSM300774)
|
| Sample_geo_accession | GSM1021317
| | Sample_status | Public on Jan 28 2013
| | Sample_submission_date | Oct 17 2012
| | Sample_last_update_date | Jan 29 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extraction.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Total RNA was reverse-transcribed and amplified using the NuGen Ovation™ RNA amplification system V2 with Ovation™WB reagent. Amplified RNA was fragmented and labeled using the NuGen FL-Ovation™ cDNA Biotin Module V2. Amplification and labeling were performed on a Beckman-Coulter ArrayPlex.
| | Sample_hyb_protocol | Procedure used standard Affymetrix protocol.
| | Sample_scan_protocol | Procedure used standard Affymetrix protocol.
| | Sample_data_processing | Scans were imported into Rosetta Resolver and pre-processed using the 'Resolver Affymetrix Rosetta Intensity Profile Builder (saves reporters)' pipeline
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jeannette,,Bigler
| | Sample_contact_email | jbigler@amgen.com
| | Sample_contact_institute | Amgen, Inc.
| | Sample_contact_address | 1201 Amgen Court West
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98119
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1021nnn/GSM1021317/suppl/GSM1021317_skn48443.CEL.gz
| | Sample_series_id | GSE41663
| | Sample_series_id | GSE41664
| | Sample_data_row_count | 54675
| | |
|
GSM1021318 | GPL570 |
|
PsOEt-14-Week 1
|
Lesional skin biopsy from psoriasis patient, Week1_etanercept
|
tissue type: Lesional skin
time: Week1_etanercept
|
E_LS_Wk1 in GSE11903 (GSM300775)
|
| Sample_geo_accession | GSM1021318
| | Sample_status | Public on Jan 28 2013
| | Sample_submission_date | Oct 17 2012
| | Sample_last_update_date | Jan 29 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extraction.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Total RNA was reverse-transcribed and amplified using the NuGen Ovation™ RNA amplification system V2 with Ovation™WB reagent. Amplified RNA was fragmented and labeled using the NuGen FL-Ovation™ cDNA Biotin Module V2. Amplification and labeling were performed on a Beckman-Coulter ArrayPlex.
| | Sample_hyb_protocol | Procedure used standard Affymetrix protocol.
| | Sample_scan_protocol | Procedure used standard Affymetrix protocol.
| | Sample_data_processing | Scans were imported into Rosetta Resolver and pre-processed using the 'Resolver Affymetrix Rosetta Intensity Profile Builder (saves reporters)' pipeline
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jeannette,,Bigler
| | Sample_contact_email | jbigler@amgen.com
| | Sample_contact_institute | Amgen, Inc.
| | Sample_contact_address | 1201 Amgen Court West
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98119
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1021nnn/GSM1021318/suppl/GSM1021318_skn48444.CEL.gz
| | Sample_series_id | GSE41663
| | Sample_series_id | GSE41664
| | Sample_data_row_count | 54675
| | |
|
GSM1021320 | GPL570 |
|
PsOEt-14-Week 4
|
Lesional skin biopsy from psoriasis patient, Week4_etanercept
|
tissue type: Lesional skin
time: Week4_etanercept
|
E_LS_Wk4 in GSE11903 (GSM300777)
|
| Sample_geo_accession | GSM1021320
| | Sample_status | Public on Jan 28 2013
| | Sample_submission_date | Oct 17 2012
| | Sample_last_update_date | Jan 29 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extraction.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Total RNA was reverse-transcribed and amplified using the NuGen Ovation™ RNA amplification system V2 with Ovation™WB reagent. Amplified RNA was fragmented and labeled using the NuGen FL-Ovation™ cDNA Biotin Module V2. Amplification and labeling were performed on a Beckman-Coulter ArrayPlex.
| | Sample_hyb_protocol | Procedure used standard Affymetrix protocol.
| | Sample_scan_protocol | Procedure used standard Affymetrix protocol.
| | Sample_data_processing | Scans were imported into Rosetta Resolver and pre-processed using the 'Resolver Affymetrix Rosetta Intensity Profile Builder (saves reporters)' pipeline
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jeannette,,Bigler
| | Sample_contact_email | jbigler@amgen.com
| | Sample_contact_institute | Amgen, Inc.
| | Sample_contact_address | 1201 Amgen Court West
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98119
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1021nnn/GSM1021320/suppl/GSM1021320_skn48446.CEL.gz
| | Sample_series_id | GSE41663
| | Sample_series_id | GSE41664
| | Sample_data_row_count | 54675
| | |
|
GSM1021321 | GPL570 |
|
PsOEt-15-NL
|
Non-lesional skin biopsy from psoriasis patient, Pre-dose
|
tissue type: Non-lesional skin
time: Pre-dose
|
F_NL_Time0 in GSE11903 (GSM300779)
|
| Sample_geo_accession | GSM1021321
| | Sample_status | Public on Jan 28 2013
| | Sample_submission_date | Oct 17 2012
| | Sample_last_update_date | Jan 29 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extraction.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Total RNA was reverse-transcribed and amplified using the NuGen Ovation™ RNA amplification system V2 with Ovation™WB reagent. Amplified RNA was fragmented and labeled using the NuGen FL-Ovation™ cDNA Biotin Module V2. Amplification and labeling were performed on a Beckman-Coulter ArrayPlex.
| | Sample_hyb_protocol | Procedure used standard Affymetrix protocol.
| | Sample_scan_protocol | Procedure used standard Affymetrix protocol.
| | Sample_data_processing | Scans were imported into Rosetta Resolver and pre-processed using the 'Resolver Affymetrix Rosetta Intensity Profile Builder (saves reporters)' pipeline
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jeannette,,Bigler
| | Sample_contact_email | jbigler@amgen.com
| | Sample_contact_institute | Amgen, Inc.
| | Sample_contact_address | 1201 Amgen Court West
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98119
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1021nnn/GSM1021321/suppl/GSM1021321_skn48447.CEL.gz
| | Sample_series_id | GSE41663
| | Sample_series_id | GSE41664
| | Sample_data_row_count | 54675
| | |
|
GSM1021322 | GPL570 |
|
PsOEt-15-LS
|
Lesional skin biopsy from psoriasis patient, Pre-dose
|
tissue type: Lesional skin
time: Pre-dose
|
F_LS_Time0 in GSE11903 (GSM300780)
|
| Sample_geo_accession | GSM1021322
| | Sample_status | Public on Jan 28 2013
| | Sample_submission_date | Oct 17 2012
| | Sample_last_update_date | Jan 29 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extraction.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Total RNA was reverse-transcribed and amplified using the NuGen Ovation™ RNA amplification system V2 with Ovation™WB reagent. Amplified RNA was fragmented and labeled using the NuGen FL-Ovation™ cDNA Biotin Module V2. Amplification and labeling were performed on a Beckman-Coulter ArrayPlex.
| | Sample_hyb_protocol | Procedure used standard Affymetrix protocol.
| | Sample_scan_protocol | Procedure used standard Affymetrix protocol.
| | Sample_data_processing | Scans were imported into Rosetta Resolver and pre-processed using the 'Resolver Affymetrix Rosetta Intensity Profile Builder (saves reporters)' pipeline
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jeannette,,Bigler
| | Sample_contact_email | jbigler@amgen.com
| | Sample_contact_institute | Amgen, Inc.
| | Sample_contact_address | 1201 Amgen Court West
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98119
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1021nnn/GSM1021322/suppl/GSM1021322_skn48448.CEL.gz
| | Sample_series_id | GSE41663
| | Sample_series_id | GSE41664
| | Sample_data_row_count | 54675
| | |
|
GSM1021323 | GPL570 |
|
PsOEt-15-Week 1
|
Lesional skin biopsy from psoriasis patient, Week1_etanercept
|
tissue type: Lesional skin
time: Week1_etanercept
|
F_LS_Wk1 in GSE11903 (GSM300781)
|
| Sample_geo_accession | GSM1021323
| | Sample_status | Public on Jan 28 2013
| | Sample_submission_date | Oct 17 2012
| | Sample_last_update_date | Jan 29 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extraction.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Total RNA was reverse-transcribed and amplified using the NuGen Ovation™ RNA amplification system V2 with Ovation™WB reagent. Amplified RNA was fragmented and labeled using the NuGen FL-Ovation™ cDNA Biotin Module V2. Amplification and labeling were performed on a Beckman-Coulter ArrayPlex.
| | Sample_hyb_protocol | Procedure used standard Affymetrix protocol.
| | Sample_scan_protocol | Procedure used standard Affymetrix protocol.
| | Sample_data_processing | Scans were imported into Rosetta Resolver and pre-processed using the 'Resolver Affymetrix Rosetta Intensity Profile Builder (saves reporters)' pipeline
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jeannette,,Bigler
| | Sample_contact_email | jbigler@amgen.com
| | Sample_contact_institute | Amgen, Inc.
| | Sample_contact_address | 1201 Amgen Court West
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98119
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1021nnn/GSM1021323/suppl/GSM1021323_skn48449.CEL.gz
| | Sample_series_id | GSE41663
| | Sample_series_id | GSE41664
| | Sample_data_row_count | 54675
| | |
|
GSM1021324 | GPL570 |
|
PsOEt-15-Week 2
|
Lesional skin biopsy from psoriasis patient, Week2_etanercept
|
tissue type: Lesional skin
time: Week2_etanercept
|
F_LS_Wk2 in GSE11903 (GSM300782)
|
| Sample_geo_accession | GSM1021324
| | Sample_status | Public on Jan 28 2013
| | Sample_submission_date | Oct 17 2012
| | Sample_last_update_date | Jan 29 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extraction.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Total RNA was reverse-transcribed and amplified using the NuGen Ovation™ RNA amplification system V2 with Ovation™WB reagent. Amplified RNA was fragmented and labeled using the NuGen FL-Ovation™ cDNA Biotin Module V2. Amplification and labeling were performed on a Beckman-Coulter ArrayPlex.
| | Sample_hyb_protocol | Procedure used standard Affymetrix protocol.
| | Sample_scan_protocol | Procedure used standard Affymetrix protocol.
| | Sample_data_processing | Scans were imported into Rosetta Resolver and pre-processed using the 'Resolver Affymetrix Rosetta Intensity Profile Builder (saves reporters)' pipeline
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jeannette,,Bigler
| | Sample_contact_email | jbigler@amgen.com
| | Sample_contact_institute | Amgen, Inc.
| | Sample_contact_address | 1201 Amgen Court West
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98119
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1021nnn/GSM1021324/suppl/GSM1021324_skn48450.CEL.gz
| | Sample_series_id | GSE41663
| | Sample_series_id | GSE41664
| | Sample_data_row_count | 54675
| | |
|
GSM1021325 | GPL570 |
|
PsOEt-15-Week 4
|
Lesional skin biopsy from psoriasis patient, Week4_etanercept
|
tissue type: Lesional skin
time: Week4_etanercept
|
F_LS_Wk4 in GSE11903 (GSM300783)
|
| Sample_geo_accession | GSM1021325
| | Sample_status | Public on Jan 28 2013
| | Sample_submission_date | Oct 17 2012
| | Sample_last_update_date | Jan 29 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extraction.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Total RNA was reverse-transcribed and amplified using the NuGen Ovation™ RNA amplification system V2 with Ovation™WB reagent. Amplified RNA was fragmented and labeled using the NuGen FL-Ovation™ cDNA Biotin Module V2. Amplification and labeling were performed on a Beckman-Coulter ArrayPlex.
| | Sample_hyb_protocol | Procedure used standard Affymetrix protocol.
| | Sample_scan_protocol | Procedure used standard Affymetrix protocol.
| | Sample_data_processing | Scans were imported into Rosetta Resolver and pre-processed using the 'Resolver Affymetrix Rosetta Intensity Profile Builder (saves reporters)' pipeline
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jeannette,,Bigler
| | Sample_contact_email | jbigler@amgen.com
| | Sample_contact_institute | Amgen, Inc.
| | Sample_contact_address | 1201 Amgen Court West
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98119
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1021nnn/GSM1021325/suppl/GSM1021325_skn48451.CEL.gz
| | Sample_series_id | GSE41663
| | Sample_series_id | GSE41664
| | Sample_data_row_count | 54675
| | |
|
GSM1021326 | GPL570 |
|
PsOEt-16-NL
|
Non-lesional skin biopsy from psoriasis patient, Pre-dose
|
tissue type: Non-lesional skin
time: Pre-dose
|
G_NL_Time0 in GSE11903 (GSM300785)
|
| Sample_geo_accession | GSM1021326
| | Sample_status | Public on Jan 28 2013
| | Sample_submission_date | Oct 17 2012
| | Sample_last_update_date | Jan 29 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extraction.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Total RNA was reverse-transcribed and amplified using the NuGen Ovation™ RNA amplification system V2 with Ovation™WB reagent. Amplified RNA was fragmented and labeled using the NuGen FL-Ovation™ cDNA Biotin Module V2. Amplification and labeling were performed on a Beckman-Coulter ArrayPlex.
| | Sample_hyb_protocol | Procedure used standard Affymetrix protocol.
| | Sample_scan_protocol | Procedure used standard Affymetrix protocol.
| | Sample_data_processing | Scans were imported into Rosetta Resolver and pre-processed using the 'Resolver Affymetrix Rosetta Intensity Profile Builder (saves reporters)' pipeline
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jeannette,,Bigler
| | Sample_contact_email | jbigler@amgen.com
| | Sample_contact_institute | Amgen, Inc.
| | Sample_contact_address | 1201 Amgen Court West
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98119
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1021nnn/GSM1021326/suppl/GSM1021326_skn48455.CEL.gz
| | Sample_series_id | GSE41663
| | Sample_series_id | GSE41664
| | Sample_data_row_count | 54675
| | |
|
GSM1021327 | GPL570 |
|
PsOEt-16-LS
|
Lesional skin biopsy from psoriasis patient, Pre-dose
|
tissue type: Lesional skin
time: Pre-dose
|
G_LS_Time0 in GSE11903 (GSM300786)
|
| Sample_geo_accession | GSM1021327
| | Sample_status | Public on Jan 28 2013
| | Sample_submission_date | Oct 17 2012
| | Sample_last_update_date | Jan 29 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extraction.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Total RNA was reverse-transcribed and amplified using the NuGen Ovation™ RNA amplification system V2 with Ovation™WB reagent. Amplified RNA was fragmented and labeled using the NuGen FL-Ovation™ cDNA Biotin Module V2. Amplification and labeling were performed on a Beckman-Coulter ArrayPlex.
| | Sample_hyb_protocol | Procedure used standard Affymetrix protocol.
| | Sample_scan_protocol | Procedure used standard Affymetrix protocol.
| | Sample_data_processing | Scans were imported into Rosetta Resolver and pre-processed using the 'Resolver Affymetrix Rosetta Intensity Profile Builder (saves reporters)' pipeline
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jeannette,,Bigler
| | Sample_contact_email | jbigler@amgen.com
| | Sample_contact_institute | Amgen, Inc.
| | Sample_contact_address | 1201 Amgen Court West
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98119
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1021nnn/GSM1021327/suppl/GSM1021327_skn48456.CEL.gz
| | Sample_series_id | GSE41663
| | Sample_series_id | GSE41664
| | Sample_data_row_count | 54675
| | |
|
GSM1021328 | GPL570 |
|
PsOEt-16-Week 1
|
Lesional skin biopsy from psoriasis patient, Week1_etanercept
|
tissue type: Lesional skin
time: Week1_etanercept
|
G_LS_Wk1 in GSE11903 (GSM300787)
|
| Sample_geo_accession | GSM1021328
| | Sample_status | Public on Jan 28 2013
| | Sample_submission_date | Oct 17 2012
| | Sample_last_update_date | Jan 29 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extraction.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Total RNA was reverse-transcribed and amplified using the NuGen Ovation™ RNA amplification system V2 with Ovation™WB reagent. Amplified RNA was fragmented and labeled using the NuGen FL-Ovation™ cDNA Biotin Module V2. Amplification and labeling were performed on a Beckman-Coulter ArrayPlex.
| | Sample_hyb_protocol | Procedure used standard Affymetrix protocol.
| | Sample_scan_protocol | Procedure used standard Affymetrix protocol.
| | Sample_data_processing | Scans were imported into Rosetta Resolver and pre-processed using the 'Resolver Affymetrix Rosetta Intensity Profile Builder (saves reporters)' pipeline
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jeannette,,Bigler
| | Sample_contact_email | jbigler@amgen.com
| | Sample_contact_institute | Amgen, Inc.
| | Sample_contact_address | 1201 Amgen Court West
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98119
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1021nnn/GSM1021328/suppl/GSM1021328_skn48457.CEL.gz
| | Sample_series_id | GSE41663
| | Sample_series_id | GSE41664
| | Sample_data_row_count | 54675
| | |
|
GSM1021329 | GPL570 |
|
PsOEt-16-Week 2
|
Lesional skin biopsy from psoriasis patient, Week2_etanercept
|
tissue type: Lesional skin
time: Week2_etanercept
|
G_LS_Wk2 in GSE11903 (GSM300788)
|
| Sample_geo_accession | GSM1021329
| | Sample_status | Public on Jan 28 2013
| | Sample_submission_date | Oct 17 2012
| | Sample_last_update_date | Jan 29 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extraction.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Total RNA was reverse-transcribed and amplified using the NuGen Ovation™ RNA amplification system V2 with Ovation™WB reagent. Amplified RNA was fragmented and labeled using the NuGen FL-Ovation™ cDNA Biotin Module V2. Amplification and labeling were performed on a Beckman-Coulter ArrayPlex.
| | Sample_hyb_protocol | Procedure used standard Affymetrix protocol.
| | Sample_scan_protocol | Procedure used standard Affymetrix protocol.
| | Sample_data_processing | Scans were imported into Rosetta Resolver and pre-processed using the 'Resolver Affymetrix Rosetta Intensity Profile Builder (saves reporters)' pipeline
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jeannette,,Bigler
| | Sample_contact_email | jbigler@amgen.com
| | Sample_contact_institute | Amgen, Inc.
| | Sample_contact_address | 1201 Amgen Court West
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98119
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1021nnn/GSM1021329/suppl/GSM1021329_skn48458.CEL.gz
| | Sample_series_id | GSE41663
| | Sample_series_id | GSE41664
| | Sample_data_row_count | 54675
| | |
|
GSM1021330 | GPL570 |
|
PsOEt-16-Week 4
|
Lesional skin biopsy from psoriasis patient, Week4_etanercept
|
tissue type: Lesional skin
time: Week4_etanercept
|
G_LS_Wk4 in GSE11903 (GSM300789)
|
| Sample_geo_accession | GSM1021330
| | Sample_status | Public on Jan 28 2013
| | Sample_submission_date | Oct 17 2012
| | Sample_last_update_date | Jan 29 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extraction.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Total RNA was reverse-transcribed and amplified using the NuGen Ovation™ RNA amplification system V2 with Ovation™WB reagent. Amplified RNA was fragmented and labeled using the NuGen FL-Ovation™ cDNA Biotin Module V2. Amplification and labeling were performed on a Beckman-Coulter ArrayPlex.
| | Sample_hyb_protocol | Procedure used standard Affymetrix protocol.
| | Sample_scan_protocol | Procedure used standard Affymetrix protocol.
| | Sample_data_processing | Scans were imported into Rosetta Resolver and pre-processed using the 'Resolver Affymetrix Rosetta Intensity Profile Builder (saves reporters)' pipeline
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jeannette,,Bigler
| | Sample_contact_email | jbigler@amgen.com
| | Sample_contact_institute | Amgen, Inc.
| | Sample_contact_address | 1201 Amgen Court West
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98119
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1021nnn/GSM1021330/suppl/GSM1021330_skn48459.CEL.gz
| | Sample_series_id | GSE41663
| | Sample_series_id | GSE41664
| | Sample_data_row_count | 54675
| | |
|
GSM1021331 | GPL570 |
|
PsOEt-16-Week 12
|
Lesional skin biopsy from psoriasis patient, Week12_etanercept
|
tissue type: Lesional skin
time: Week12_etanercept
|
G_LS_Wk12 in GSE11903 (GSM300790)
|
| Sample_geo_accession | GSM1021331
| | Sample_status | Public on Jan 28 2013
| | Sample_submission_date | Oct 17 2012
| | Sample_last_update_date | Jan 29 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extraction.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Total RNA was reverse-transcribed and amplified using the NuGen Ovation™ RNA amplification system V2 with Ovation™WB reagent. Amplified RNA was fragmented and labeled using the NuGen FL-Ovation™ cDNA Biotin Module V2. Amplification and labeling were performed on a Beckman-Coulter ArrayPlex.
| | Sample_hyb_protocol | Procedure used standard Affymetrix protocol.
| | Sample_scan_protocol | Procedure used standard Affymetrix protocol.
| | Sample_data_processing | Scans were imported into Rosetta Resolver and pre-processed using the 'Resolver Affymetrix Rosetta Intensity Profile Builder (saves reporters)' pipeline
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jeannette,,Bigler
| | Sample_contact_email | jbigler@amgen.com
| | Sample_contact_institute | Amgen, Inc.
| | Sample_contact_address | 1201 Amgen Court West
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98119
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1021nnn/GSM1021331/suppl/GSM1021331_skn48460.CEL.gz
| | Sample_series_id | GSE41663
| | Sample_series_id | GSE41664
| | Sample_data_row_count | 54675
| | |
|
GSM1021332 | GPL570 |
|
PsOEt-17-NL
|
Non-lesional skin biopsy from psoriasis patient, Pre-dose
|
tissue type: Non-lesional skin
time: Pre-dose
|
H_NL_Time0 in GSE11903 (GSM300791)
|
| Sample_geo_accession | GSM1021332
| | Sample_status | Public on Jan 28 2013
| | Sample_submission_date | Oct 17 2012
| | Sample_last_update_date | Jan 29 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extraction.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Total RNA was reverse-transcribed and amplified using the NuGen Ovation™ RNA amplification system V2 with Ovation™WB reagent. Amplified RNA was fragmented and labeled using the NuGen FL-Ovation™ cDNA Biotin Module V2. Amplification and labeling were performed on a Beckman-Coulter ArrayPlex.
| | Sample_hyb_protocol | Procedure used standard Affymetrix protocol.
| | Sample_scan_protocol | Procedure used standard Affymetrix protocol.
| | Sample_data_processing | Scans were imported into Rosetta Resolver and pre-processed using the 'Resolver Affymetrix Rosetta Intensity Profile Builder (saves reporters)' pipeline
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jeannette,,Bigler
| | Sample_contact_email | jbigler@amgen.com
| | Sample_contact_institute | Amgen, Inc.
| | Sample_contact_address | 1201 Amgen Court West
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98119
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1021nnn/GSM1021332/suppl/GSM1021332_skn48461.CEL.gz
| | Sample_series_id | GSE41663
| | Sample_series_id | GSE41664
| | Sample_data_row_count | 54675
| | |
|
GSM1021333 | GPL570 |
|
PsOEt-17-LS
|
Lesional skin biopsy from psoriasis patient, Pre-dose
|
tissue type: Lesional skin
time: Pre-dose
|
H_LS_Time0 in GSE11903 (GSM300792)
|
| Sample_geo_accession | GSM1021333
| | Sample_status | Public on Jan 28 2013
| | Sample_submission_date | Oct 17 2012
| | Sample_last_update_date | Jan 29 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extraction.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Total RNA was reverse-transcribed and amplified using the NuGen Ovation™ RNA amplification system V2 with Ovation™WB reagent. Amplified RNA was fragmented and labeled using the NuGen FL-Ovation™ cDNA Biotin Module V2. Amplification and labeling were performed on a Beckman-Coulter ArrayPlex.
| | Sample_hyb_protocol | Procedure used standard Affymetrix protocol.
| | Sample_scan_protocol | Procedure used standard Affymetrix protocol.
| | Sample_data_processing | Scans were imported into Rosetta Resolver and pre-processed using the 'Resolver Affymetrix Rosetta Intensity Profile Builder (saves reporters)' pipeline
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jeannette,,Bigler
| | Sample_contact_email | jbigler@amgen.com
| | Sample_contact_institute | Amgen, Inc.
| | Sample_contact_address | 1201 Amgen Court West
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98119
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1021nnn/GSM1021333/suppl/GSM1021333_skn48462.CEL.gz
| | Sample_series_id | GSE41663
| | Sample_series_id | GSE41664
| | Sample_data_row_count | 54675
| | |
|
GSM1021334 | GPL570 |
|
PsOEt-17-Week 1
|
Lesional skin biopsy from psoriasis patient, Week1_etanercept
|
tissue type: Lesional skin
time: Week1_etanercept
|
H_LS_Wk1 in GSE11903 (GSM300793)
|
| Sample_geo_accession | GSM1021334
| | Sample_status | Public on Jan 28 2013
| | Sample_submission_date | Oct 17 2012
| | Sample_last_update_date | Jan 29 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extraction.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Total RNA was reverse-transcribed and amplified using the NuGen Ovation™ RNA amplification system V2 with Ovation™WB reagent. Amplified RNA was fragmented and labeled using the NuGen FL-Ovation™ cDNA Biotin Module V2. Amplification and labeling were performed on a Beckman-Coulter ArrayPlex.
| | Sample_hyb_protocol | Procedure used standard Affymetrix protocol.
| | Sample_scan_protocol | Procedure used standard Affymetrix protocol.
| | Sample_data_processing | Scans were imported into Rosetta Resolver and pre-processed using the 'Resolver Affymetrix Rosetta Intensity Profile Builder (saves reporters)' pipeline
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jeannette,,Bigler
| | Sample_contact_email | jbigler@amgen.com
| | Sample_contact_institute | Amgen, Inc.
| | Sample_contact_address | 1201 Amgen Court West
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98119
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1021nnn/GSM1021334/suppl/GSM1021334_skn48463.CEL.gz
| | Sample_series_id | GSE41663
| | Sample_series_id | GSE41664
| | Sample_data_row_count | 54675
| | |
|
GSM1021335 | GPL570 |
|
PsOEt-17-Week 2
|
Lesional skin biopsy from psoriasis patient, Week2_etanercept
|
tissue type: Lesional skin
time: Week2_etanercept
|
H_LS_Wk2 in GSE11903 (GSM300794)
|
| Sample_geo_accession | GSM1021335
| | Sample_status | Public on Jan 28 2013
| | Sample_submission_date | Oct 17 2012
| | Sample_last_update_date | Jan 29 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extraction.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Total RNA was reverse-transcribed and amplified using the NuGen Ovation™ RNA amplification system V2 with Ovation™WB reagent. Amplified RNA was fragmented and labeled using the NuGen FL-Ovation™ cDNA Biotin Module V2. Amplification and labeling were performed on a Beckman-Coulter ArrayPlex.
| | Sample_hyb_protocol | Procedure used standard Affymetrix protocol.
| | Sample_scan_protocol | Procedure used standard Affymetrix protocol.
| | Sample_data_processing | Scans were imported into Rosetta Resolver and pre-processed using the 'Resolver Affymetrix Rosetta Intensity Profile Builder (saves reporters)' pipeline
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jeannette,,Bigler
| | Sample_contact_email | jbigler@amgen.com
| | Sample_contact_institute | Amgen, Inc.
| | Sample_contact_address | 1201 Amgen Court West
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98119
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1021nnn/GSM1021335/suppl/GSM1021335_skn48464.CEL.gz
| | Sample_series_id | GSE41663
| | Sample_series_id | GSE41664
| | Sample_data_row_count | 54675
| | |
|
GSM1021336 | GPL570 |
|
PsOEt-17-Week 4
|
Lesional skin biopsy from psoriasis patient, Week4_etanercept
|
tissue type: Lesional skin
time: Week4_etanercept
|
H_LS_Wk4 in GSE11903 (GSM300795)
|
| Sample_geo_accession | GSM1021336
| | Sample_status | Public on Jan 28 2013
| | Sample_submission_date | Oct 17 2012
| | Sample_last_update_date | Jan 29 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extraction.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Total RNA was reverse-transcribed and amplified using the NuGen Ovation™ RNA amplification system V2 with Ovation™WB reagent. Amplified RNA was fragmented and labeled using the NuGen FL-Ovation™ cDNA Biotin Module V2. Amplification and labeling were performed on a Beckman-Coulter ArrayPlex.
| | Sample_hyb_protocol | Procedure used standard Affymetrix protocol.
| | Sample_scan_protocol | Procedure used standard Affymetrix protocol.
| | Sample_data_processing | Scans were imported into Rosetta Resolver and pre-processed using the 'Resolver Affymetrix Rosetta Intensity Profile Builder (saves reporters)' pipeline
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jeannette,,Bigler
| | Sample_contact_email | jbigler@amgen.com
| | Sample_contact_institute | Amgen, Inc.
| | Sample_contact_address | 1201 Amgen Court West
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98119
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1021nnn/GSM1021336/suppl/GSM1021336_skn48465.CEL.gz
| | Sample_series_id | GSE41663
| | Sample_series_id | GSE41664
| | Sample_data_row_count | 54675
| | |
|
GSM1021337 | GPL570 |
|
PsOEt-17-Week 12
|
Lesional skin biopsy from psoriasis patient, Week12_etanercept
|
tissue type: Lesional skin
time: Week12_etanercept
|
H_LS_Wk12 in GSE11903 (GSM300796)
|
| Sample_geo_accession | GSM1021337
| | Sample_status | Public on Jan 28 2013
| | Sample_submission_date | Oct 17 2012
| | Sample_last_update_date | Jan 29 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extraction.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Total RNA was reverse-transcribed and amplified using the NuGen Ovation™ RNA amplification system V2 with Ovation™WB reagent. Amplified RNA was fragmented and labeled using the NuGen FL-Ovation™ cDNA Biotin Module V2. Amplification and labeling were performed on a Beckman-Coulter ArrayPlex.
| | Sample_hyb_protocol | Procedure used standard Affymetrix protocol.
| | Sample_scan_protocol | Procedure used standard Affymetrix protocol.
| | Sample_data_processing | Scans were imported into Rosetta Resolver and pre-processed using the 'Resolver Affymetrix Rosetta Intensity Profile Builder (saves reporters)' pipeline
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jeannette,,Bigler
| | Sample_contact_email | jbigler@amgen.com
| | Sample_contact_institute | Amgen, Inc.
| | Sample_contact_address | 1201 Amgen Court West
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98119
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1021nnn/GSM1021337/suppl/GSM1021337_skn48466.CEL.gz
| | Sample_series_id | GSE41663
| | Sample_series_id | GSE41664
| | Sample_data_row_count | 54675
| | |
|
GSM1021338 | GPL570 |
|
PsOEt-18-NL
|
Non-lesional skin biopsy from psoriasis patient, Pre-dose
|
tissue type: Non-lesional skin
time: Pre-dose
|
I_NL_Time0 in GSE11903 (GSM300797)
|
| Sample_geo_accession | GSM1021338
| | Sample_status | Public on Jan 28 2013
| | Sample_submission_date | Oct 17 2012
| | Sample_last_update_date | Jan 29 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extraction.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Total RNA was reverse-transcribed and amplified using the NuGen Ovation™ RNA amplification system V2 with Ovation™WB reagent. Amplified RNA was fragmented and labeled using the NuGen FL-Ovation™ cDNA Biotin Module V2. Amplification and labeling were performed on a Beckman-Coulter ArrayPlex.
| | Sample_hyb_protocol | Procedure used standard Affymetrix protocol.
| | Sample_scan_protocol | Procedure used standard Affymetrix protocol.
| | Sample_data_processing | Scans were imported into Rosetta Resolver and pre-processed using the 'Resolver Affymetrix Rosetta Intensity Profile Builder (saves reporters)' pipeline
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jeannette,,Bigler
| | Sample_contact_email | jbigler@amgen.com
| | Sample_contact_institute | Amgen, Inc.
| | Sample_contact_address | 1201 Amgen Court West
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98119
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1021nnn/GSM1021338/suppl/GSM1021338_skn48467.CEL.gz
| | Sample_series_id | GSE41663
| | Sample_series_id | GSE41664
| | Sample_data_row_count | 54675
| | |
|
GSM1021339 | GPL570 |
|
PsOEt-18-LS
|
Lesional skin biopsy from psoriasis patient, Pre-dose
|
tissue type: Lesional skin
time: Pre-dose
|
I_LS_Time0 in GSE11903 (GSM300798)
|
| Sample_geo_accession | GSM1021339
| | Sample_status | Public on Jan 28 2013
| | Sample_submission_date | Oct 17 2012
| | Sample_last_update_date | Jan 29 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extraction.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Total RNA was reverse-transcribed and amplified using the NuGen Ovation™ RNA amplification system V2 with Ovation™WB reagent. Amplified RNA was fragmented and labeled using the NuGen FL-Ovation™ cDNA Biotin Module V2. Amplification and labeling were performed on a Beckman-Coulter ArrayPlex.
| | Sample_hyb_protocol | Procedure used standard Affymetrix protocol.
| | Sample_scan_protocol | Procedure used standard Affymetrix protocol.
| | Sample_data_processing | Scans were imported into Rosetta Resolver and pre-processed using the 'Resolver Affymetrix Rosetta Intensity Profile Builder (saves reporters)' pipeline
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jeannette,,Bigler
| | Sample_contact_email | jbigler@amgen.com
| | Sample_contact_institute | Amgen, Inc.
| | Sample_contact_address | 1201 Amgen Court West
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98119
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1021nnn/GSM1021339/suppl/GSM1021339_skn48468.CEL.gz
| | Sample_series_id | GSE41663
| | Sample_series_id | GSE41664
| | Sample_data_row_count | 54675
| | |
|
GSM1021340 | GPL570 |
|
PsOEt-18-Week 1
|
Lesional skin biopsy from psoriasis patient, Week1_etanercept
|
tissue type: Lesional skin
time: Week1_etanercept
|
I_LS_Wk1 in GSE11903 (GSM300799)
|
| Sample_geo_accession | GSM1021340
| | Sample_status | Public on Jan 28 2013
| | Sample_submission_date | Oct 17 2012
| | Sample_last_update_date | Jan 29 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extraction.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Total RNA was reverse-transcribed and amplified using the NuGen Ovation™ RNA amplification system V2 with Ovation™WB reagent. Amplified RNA was fragmented and labeled using the NuGen FL-Ovation™ cDNA Biotin Module V2. Amplification and labeling were performed on a Beckman-Coulter ArrayPlex.
| | Sample_hyb_protocol | Procedure used standard Affymetrix protocol.
| | Sample_scan_protocol | Procedure used standard Affymetrix protocol.
| | Sample_data_processing | Scans were imported into Rosetta Resolver and pre-processed using the 'Resolver Affymetrix Rosetta Intensity Profile Builder (saves reporters)' pipeline
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jeannette,,Bigler
| | Sample_contact_email | jbigler@amgen.com
| | Sample_contact_institute | Amgen, Inc.
| | Sample_contact_address | 1201 Amgen Court West
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98119
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1021nnn/GSM1021340/suppl/GSM1021340_skn48469.CEL.gz
| | Sample_series_id | GSE41663
| | Sample_series_id | GSE41664
| | Sample_data_row_count | 54675
| | |
|
GSM1021341 | GPL570 |
|
PsOEt-18-Week 2
|
Lesional skin biopsy from psoriasis patient, Week2_etanercept
|
tissue type: Lesional skin
time: Week2_etanercept
|
I_LS_Wk2 in GSE11903 (GSM300800)
|
| Sample_geo_accession | GSM1021341
| | Sample_status | Public on Jan 28 2013
| | Sample_submission_date | Oct 17 2012
| | Sample_last_update_date | Jan 29 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extraction.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Total RNA was reverse-transcribed and amplified using the NuGen Ovation™ RNA amplification system V2 with Ovation™WB reagent. Amplified RNA was fragmented and labeled using the NuGen FL-Ovation™ cDNA Biotin Module V2. Amplification and labeling were performed on a Beckman-Coulter ArrayPlex.
| | Sample_hyb_protocol | Procedure used standard Affymetrix protocol.
| | Sample_scan_protocol | Procedure used standard Affymetrix protocol.
| | Sample_data_processing | Scans were imported into Rosetta Resolver and pre-processed using the 'Resolver Affymetrix Rosetta Intensity Profile Builder (saves reporters)' pipeline
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jeannette,,Bigler
| | Sample_contact_email | jbigler@amgen.com
| | Sample_contact_institute | Amgen, Inc.
| | Sample_contact_address | 1201 Amgen Court West
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98119
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1021nnn/GSM1021341/suppl/GSM1021341_skn48470.CEL.gz
| | Sample_series_id | GSE41663
| | Sample_series_id | GSE41664
| | Sample_data_row_count | 54675
| | |
|
GSM1021342 | GPL570 |
|
PsOEt-18-Week 4
|
Lesional skin biopsy from psoriasis patient, Week4_etanercept
|
tissue type: Lesional skin
time: Week4_etanercept
|
I_LS_Wk4 in GSE11903 (GSM300801)
|
| Sample_geo_accession | GSM1021342
| | Sample_status | Public on Jan 28 2013
| | Sample_submission_date | Oct 17 2012
| | Sample_last_update_date | Jan 29 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extraction.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Total RNA was reverse-transcribed and amplified using the NuGen Ovation™ RNA amplification system V2 with Ovation™WB reagent. Amplified RNA was fragmented and labeled using the NuGen FL-Ovation™ cDNA Biotin Module V2. Amplification and labeling were performed on a Beckman-Coulter ArrayPlex.
| | Sample_hyb_protocol | Procedure used standard Affymetrix protocol.
| | Sample_scan_protocol | Procedure used standard Affymetrix protocol.
| | Sample_data_processing | Scans were imported into Rosetta Resolver and pre-processed using the 'Resolver Affymetrix Rosetta Intensity Profile Builder (saves reporters)' pipeline
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jeannette,,Bigler
| | Sample_contact_email | jbigler@amgen.com
| | Sample_contact_institute | Amgen, Inc.
| | Sample_contact_address | 1201 Amgen Court West
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98119
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1021nnn/GSM1021342/suppl/GSM1021342_skn48471.CEL.gz
| | Sample_series_id | GSE41663
| | Sample_series_id | GSE41664
| | Sample_data_row_count | 54675
| | |
|
GSM1021343 | GPL570 |
|
PsOEt-18-Week 12
|
Lesional skin biopsy from psoriasis patient, Week12_etanercept
|
tissue type: Lesional skin
time: Week12_etanercept
|
I_LS_Wk12 in GSE11903 (GSM300802)
|
| Sample_geo_accession | GSM1021343
| | Sample_status | Public on Jan 28 2013
| | Sample_submission_date | Oct 17 2012
| | Sample_last_update_date | Jan 29 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extraction.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Total RNA was reverse-transcribed and amplified using the NuGen Ovation™ RNA amplification system V2 with Ovation™WB reagent. Amplified RNA was fragmented and labeled using the NuGen FL-Ovation™ cDNA Biotin Module V2. Amplification and labeling were performed on a Beckman-Coulter ArrayPlex.
| | Sample_hyb_protocol | Procedure used standard Affymetrix protocol.
| | Sample_scan_protocol | Procedure used standard Affymetrix protocol.
| | Sample_data_processing | Scans were imported into Rosetta Resolver and pre-processed using the 'Resolver Affymetrix Rosetta Intensity Profile Builder (saves reporters)' pipeline
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jeannette,,Bigler
| | Sample_contact_email | jbigler@amgen.com
| | Sample_contact_institute | Amgen, Inc.
| | Sample_contact_address | 1201 Amgen Court West
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98119
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1021nnn/GSM1021343/suppl/GSM1021343_skn48472.CEL.gz
| | Sample_series_id | GSE41663
| | Sample_series_id | GSE41664
| | Sample_data_row_count | 54675
| | |
|
GSM1021344 | GPL570 |
|
PsOEt-19-NL
|
Non-lesional skin biopsy from psoriasis patient, Pre-dose
|
tissue type: Non-lesional skin
time: Pre-dose
|
J_NL_Time0 in GSE11903 (GSM300803)
|
| Sample_geo_accession | GSM1021344
| | Sample_status | Public on Jan 28 2013
| | Sample_submission_date | Oct 17 2012
| | Sample_last_update_date | Jan 29 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extraction.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Total RNA was reverse-transcribed and amplified using the NuGen Ovation™ RNA amplification system V2 with Ovation™WB reagent. Amplified RNA was fragmented and labeled using the NuGen FL-Ovation™ cDNA Biotin Module V2. Amplification and labeling were performed on a Beckman-Coulter ArrayPlex.
| | Sample_hyb_protocol | Procedure used standard Affymetrix protocol.
| | Sample_scan_protocol | Procedure used standard Affymetrix protocol.
| | Sample_data_processing | Scans were imported into Rosetta Resolver and pre-processed using the 'Resolver Affymetrix Rosetta Intensity Profile Builder (saves reporters)' pipeline
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jeannette,,Bigler
| | Sample_contact_email | jbigler@amgen.com
| | Sample_contact_institute | Amgen, Inc.
| | Sample_contact_address | 1201 Amgen Court West
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98119
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1021nnn/GSM1021344/suppl/GSM1021344_skn48473.CEL.gz
| | Sample_series_id | GSE41663
| | Sample_series_id | GSE41664
| | Sample_data_row_count | 54675
| | |
|
GSM1021345 | GPL570 |
|
PsOEt-19-LS
|
Lesional skin biopsy from psoriasis patient, Pre-dose
|
tissue type: Lesional skin
time: Pre-dose
|
J_LS_Time0 in GSE11903 (GSM300804)
|
| Sample_geo_accession | GSM1021345
| | Sample_status | Public on Jan 28 2013
| | Sample_submission_date | Oct 17 2012
| | Sample_last_update_date | Jan 29 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extraction.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Total RNA was reverse-transcribed and amplified using the NuGen Ovation™ RNA amplification system V2 with Ovation™WB reagent. Amplified RNA was fragmented and labeled using the NuGen FL-Ovation™ cDNA Biotin Module V2. Amplification and labeling were performed on a Beckman-Coulter ArrayPlex.
| | Sample_hyb_protocol | Procedure used standard Affymetrix protocol.
| | Sample_scan_protocol | Procedure used standard Affymetrix protocol.
| | Sample_data_processing | Scans were imported into Rosetta Resolver and pre-processed using the 'Resolver Affymetrix Rosetta Intensity Profile Builder (saves reporters)' pipeline
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jeannette,,Bigler
| | Sample_contact_email | jbigler@amgen.com
| | Sample_contact_institute | Amgen, Inc.
| | Sample_contact_address | 1201 Amgen Court West
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98119
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1021nnn/GSM1021345/suppl/GSM1021345_skn48474.CEL.gz
| | Sample_series_id | GSE41663
| | Sample_series_id | GSE41664
| | Sample_data_row_count | 54675
| | |
|
GSM1021346 | GPL570 |
|
PsOEt-19-Week 1
|
Lesional skin biopsy from psoriasis patient, Week1_etanercept
|
tissue type: Lesional skin
time: Week1_etanercept
|
J_LS_Wk1 in GSE11903 (GSM300805)
|
| Sample_geo_accession | GSM1021346
| | Sample_status | Public on Jan 28 2013
| | Sample_submission_date | Oct 17 2012
| | Sample_last_update_date | Jan 29 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extraction.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Total RNA was reverse-transcribed and amplified using the NuGen Ovation™ RNA amplification system V2 with Ovation™WB reagent. Amplified RNA was fragmented and labeled using the NuGen FL-Ovation™ cDNA Biotin Module V2. Amplification and labeling were performed on a Beckman-Coulter ArrayPlex.
| | Sample_hyb_protocol | Procedure used standard Affymetrix protocol.
| | Sample_scan_protocol | Procedure used standard Affymetrix protocol.
| | Sample_data_processing | Scans were imported into Rosetta Resolver and pre-processed using the 'Resolver Affymetrix Rosetta Intensity Profile Builder (saves reporters)' pipeline
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jeannette,,Bigler
| | Sample_contact_email | jbigler@amgen.com
| | Sample_contact_institute | Amgen, Inc.
| | Sample_contact_address | 1201 Amgen Court West
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98119
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1021nnn/GSM1021346/suppl/GSM1021346_skn48475.CEL.gz
| | Sample_series_id | GSE41663
| | Sample_series_id | GSE41664
| | Sample_data_row_count | 54675
| | |
|
GSM1021347 | GPL570 |
|
PsOEt-19-Week 2
|
Lesional skin biopsy from psoriasis patient, Week2_etanercept
|
tissue type: Lesional skin
time: Week2_etanercept
|
J_LS_Wk2 in GSE11903 (GSM300806)
|
| Sample_geo_accession | GSM1021347
| | Sample_status | Public on Jan 28 2013
| | Sample_submission_date | Oct 17 2012
| | Sample_last_update_date | Jan 29 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extraction.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Total RNA was reverse-transcribed and amplified using the NuGen Ovation™ RNA amplification system V2 with Ovation™WB reagent. Amplified RNA was fragmented and labeled using the NuGen FL-Ovation™ cDNA Biotin Module V2. Amplification and labeling were performed on a Beckman-Coulter ArrayPlex.
| | Sample_hyb_protocol | Procedure used standard Affymetrix protocol.
| | Sample_scan_protocol | Procedure used standard Affymetrix protocol.
| | Sample_data_processing | Scans were imported into Rosetta Resolver and pre-processed using the 'Resolver Affymetrix Rosetta Intensity Profile Builder (saves reporters)' pipeline
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jeannette,,Bigler
| | Sample_contact_email | jbigler@amgen.com
| | Sample_contact_institute | Amgen, Inc.
| | Sample_contact_address | 1201 Amgen Court West
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98119
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1021nnn/GSM1021347/suppl/GSM1021347_skn48476.CEL.gz
| | Sample_series_id | GSE41663
| | Sample_series_id | GSE41664
| | Sample_data_row_count | 54675
| | |
|
GSM1021348 | GPL570 |
|
PsOEt-19-Week 4
|
Lesional skin biopsy from psoriasis patient, Week4_etanercept
|
tissue type: Lesional skin
time: Week4_etanercept
|
J_LS_Wk4 in GSE11903 (GSM300807)
|
| Sample_geo_accession | GSM1021348
| | Sample_status | Public on Jan 28 2013
| | Sample_submission_date | Oct 17 2012
| | Sample_last_update_date | Jan 29 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extraction.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Total RNA was reverse-transcribed and amplified using the NuGen Ovation™ RNA amplification system V2 with Ovation™WB reagent. Amplified RNA was fragmented and labeled using the NuGen FL-Ovation™ cDNA Biotin Module V2. Amplification and labeling were performed on a Beckman-Coulter ArrayPlex.
| | Sample_hyb_protocol | Procedure used standard Affymetrix protocol.
| | Sample_scan_protocol | Procedure used standard Affymetrix protocol.
| | Sample_data_processing | Scans were imported into Rosetta Resolver and pre-processed using the 'Resolver Affymetrix Rosetta Intensity Profile Builder (saves reporters)' pipeline
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jeannette,,Bigler
| | Sample_contact_email | jbigler@amgen.com
| | Sample_contact_institute | Amgen, Inc.
| | Sample_contact_address | 1201 Amgen Court West
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98119
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1021nnn/GSM1021348/suppl/GSM1021348_skn48477.CEL.gz
| | Sample_series_id | GSE41663
| | Sample_series_id | GSE41664
| | Sample_data_row_count | 54675
| | |
|
GSM1021349 | GPL570 |
|
PsOEt-19-Week 12
|
Lesional skin biopsy from psoriasis patient, Week12_etanercept
|
tissue type: Lesional skin
time: Week12_etanercept
|
J_LS_Wk12 in GSE11903 (GSM300808)
|
| Sample_geo_accession | GSM1021349
| | Sample_status | Public on Jan 28 2013
| | Sample_submission_date | Oct 17 2012
| | Sample_last_update_date | Jan 29 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extraction.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Total RNA was reverse-transcribed and amplified using the NuGen Ovation™ RNA amplification system V2 with Ovation™WB reagent. Amplified RNA was fragmented and labeled using the NuGen FL-Ovation™ cDNA Biotin Module V2. Amplification and labeling were performed on a Beckman-Coulter ArrayPlex.
| | Sample_hyb_protocol | Procedure used standard Affymetrix protocol.
| | Sample_scan_protocol | Procedure used standard Affymetrix protocol.
| | Sample_data_processing | Scans were imported into Rosetta Resolver and pre-processed using the 'Resolver Affymetrix Rosetta Intensity Profile Builder (saves reporters)' pipeline
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jeannette,,Bigler
| | Sample_contact_email | jbigler@amgen.com
| | Sample_contact_institute | Amgen, Inc.
| | Sample_contact_address | 1201 Amgen Court West
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98119
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1021nnn/GSM1021349/suppl/GSM1021349_skn48478.CEL.gz
| | Sample_series_id | GSE41663
| | Sample_series_id | GSE41664
| | Sample_data_row_count | 54675
| | |
|
GSM1021350 | GPL570 |
|
PsOEt-20-NL
|
Non-lesional skin biopsy from psoriasis patient, Pre-dose
|
tissue type: Non-lesional skin
time: Pre-dose
|
K_NL_Time0 in GSE11903 (GSM300809)
|
| Sample_geo_accession | GSM1021350
| | Sample_status | Public on Jan 28 2013
| | Sample_submission_date | Oct 17 2012
| | Sample_last_update_date | Jan 29 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extraction.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Total RNA was reverse-transcribed and amplified using the NuGen Ovation™ RNA amplification system V2 with Ovation™WB reagent. Amplified RNA was fragmented and labeled using the NuGen FL-Ovation™ cDNA Biotin Module V2. Amplification and labeling were performed on a Beckman-Coulter ArrayPlex.
| | Sample_hyb_protocol | Procedure used standard Affymetrix protocol.
| | Sample_scan_protocol | Procedure used standard Affymetrix protocol.
| | Sample_data_processing | Scans were imported into Rosetta Resolver and pre-processed using the 'Resolver Affymetrix Rosetta Intensity Profile Builder (saves reporters)' pipeline
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jeannette,,Bigler
| | Sample_contact_email | jbigler@amgen.com
| | Sample_contact_institute | Amgen, Inc.
| | Sample_contact_address | 1201 Amgen Court West
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98119
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1021nnn/GSM1021350/suppl/GSM1021350_skn48479.CEL.gz
| | Sample_series_id | GSE41663
| | Sample_series_id | GSE41664
| | Sample_data_row_count | 54675
| | |
|
GSM1021351 | GPL570 |
|
PsOEt-20-LS
|
Lesional skin biopsy from psoriasis patient, Pre-dose
|
tissue type: Lesional skin
time: Pre-dose
|
K_LS_Time0 in GSE11903 (GSM300810)
|
| Sample_geo_accession | GSM1021351
| | Sample_status | Public on Jan 28 2013
| | Sample_submission_date | Oct 17 2012
| | Sample_last_update_date | Jan 29 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extraction.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Total RNA was reverse-transcribed and amplified using the NuGen Ovation™ RNA amplification system V2 with Ovation™WB reagent. Amplified RNA was fragmented and labeled using the NuGen FL-Ovation™ cDNA Biotin Module V2. Amplification and labeling were performed on a Beckman-Coulter ArrayPlex.
| | Sample_hyb_protocol | Procedure used standard Affymetrix protocol.
| | Sample_scan_protocol | Procedure used standard Affymetrix protocol.
| | Sample_data_processing | Scans were imported into Rosetta Resolver and pre-processed using the 'Resolver Affymetrix Rosetta Intensity Profile Builder (saves reporters)' pipeline
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jeannette,,Bigler
| | Sample_contact_email | jbigler@amgen.com
| | Sample_contact_institute | Amgen, Inc.
| | Sample_contact_address | 1201 Amgen Court West
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98119
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1021nnn/GSM1021351/suppl/GSM1021351_skn48480.CEL.gz
| | Sample_series_id | GSE41663
| | Sample_series_id | GSE41664
| | Sample_data_row_count | 54675
| | |
|
GSM1021352 | GPL570 |
|
PsOEt-20-Week 1
|
Lesional skin biopsy from psoriasis patient, Week1_etanercept
|
tissue type: Lesional skin
time: Week1_etanercept
|
K_LS_Wk1 in GSE11903 (GSM300811)
|
| Sample_geo_accession | GSM1021352
| | Sample_status | Public on Jan 28 2013
| | Sample_submission_date | Oct 17 2012
| | Sample_last_update_date | Jan 29 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extraction.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Total RNA was reverse-transcribed and amplified using the NuGen Ovation™ RNA amplification system V2 with Ovation™WB reagent. Amplified RNA was fragmented and labeled using the NuGen FL-Ovation™ cDNA Biotin Module V2. Amplification and labeling were performed on a Beckman-Coulter ArrayPlex.
| | Sample_hyb_protocol | Procedure used standard Affymetrix protocol.
| | Sample_scan_protocol | Procedure used standard Affymetrix protocol.
| | Sample_data_processing | Scans were imported into Rosetta Resolver and pre-processed using the 'Resolver Affymetrix Rosetta Intensity Profile Builder (saves reporters)' pipeline
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jeannette,,Bigler
| | Sample_contact_email | jbigler@amgen.com
| | Sample_contact_institute | Amgen, Inc.
| | Sample_contact_address | 1201 Amgen Court West
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98119
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1021nnn/GSM1021352/suppl/GSM1021352_skn48481.CEL.gz
| | Sample_series_id | GSE41663
| | Sample_series_id | GSE41664
| | Sample_data_row_count | 54675
| | |
|
GSM1021353 | GPL570 |
|
PsOEt-20-Week 2
|
Lesional skin biopsy from psoriasis patient, Week2_etanercept
|
tissue type: Lesional skin
time: Week2_etanercept
|
K_LS_Wk2 in GSE11903 (GSM300812)
|
| Sample_geo_accession | GSM1021353
| | Sample_status | Public on Jan 28 2013
| | Sample_submission_date | Oct 17 2012
| | Sample_last_update_date | Jan 29 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extraction.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Total RNA was reverse-transcribed and amplified using the NuGen Ovation™ RNA amplification system V2 with Ovation™WB reagent. Amplified RNA was fragmented and labeled using the NuGen FL-Ovation™ cDNA Biotin Module V2. Amplification and labeling were performed on a Beckman-Coulter ArrayPlex.
| | Sample_hyb_protocol | Procedure used standard Affymetrix protocol.
| | Sample_scan_protocol | Procedure used standard Affymetrix protocol.
| | Sample_data_processing | Scans were imported into Rosetta Resolver and pre-processed using the 'Resolver Affymetrix Rosetta Intensity Profile Builder (saves reporters)' pipeline
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jeannette,,Bigler
| | Sample_contact_email | jbigler@amgen.com
| | Sample_contact_institute | Amgen, Inc.
| | Sample_contact_address | 1201 Amgen Court West
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98119
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1021nnn/GSM1021353/suppl/GSM1021353_skn48482.CEL.gz
| | Sample_series_id | GSE41663
| | Sample_series_id | GSE41664
| | Sample_data_row_count | 54675
| | |
|
GSM1021354 | GPL570 |
|
PsOEt-21-NL
|
Non-lesional skin biopsy from psoriasis patient, Pre-dose
|
tissue type: Non-lesional skin
time: Pre-dose
|
L_NL_Time0 in GSE11903 (GSM300814)
|
| Sample_geo_accession | GSM1021354
| | Sample_status | Public on Jan 28 2013
| | Sample_submission_date | Oct 17 2012
| | Sample_last_update_date | Jan 29 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extraction.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Total RNA was reverse-transcribed and amplified using the NuGen Ovation™ RNA amplification system V2 with Ovation™WB reagent. Amplified RNA was fragmented and labeled using the NuGen FL-Ovation™ cDNA Biotin Module V2. Amplification and labeling were performed on a Beckman-Coulter ArrayPlex.
| | Sample_hyb_protocol | Procedure used standard Affymetrix protocol.
| | Sample_scan_protocol | Procedure used standard Affymetrix protocol.
| | Sample_data_processing | Scans were imported into Rosetta Resolver and pre-processed using the 'Resolver Affymetrix Rosetta Intensity Profile Builder (saves reporters)' pipeline
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jeannette,,Bigler
| | Sample_contact_email | jbigler@amgen.com
| | Sample_contact_institute | Amgen, Inc.
| | Sample_contact_address | 1201 Amgen Court West
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98119
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1021nnn/GSM1021354/suppl/GSM1021354_skn48483.CEL.gz
| | Sample_series_id | GSE41663
| | Sample_series_id | GSE41664
| | Sample_data_row_count | 54675
| | |
|
GSM1021355 | GPL570 |
|
PsOEt-21-LS
|
Lesional skin biopsy from psoriasis patient, Pre-dose
|
tissue type: Lesional skin
time: Pre-dose
|
L_LS_Time0 in GSE11903 (GSM300815)
|
| Sample_geo_accession | GSM1021355
| | Sample_status | Public on Jan 28 2013
| | Sample_submission_date | Oct 17 2012
| | Sample_last_update_date | Jan 29 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extraction.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Total RNA was reverse-transcribed and amplified using the NuGen Ovation™ RNA amplification system V2 with Ovation™WB reagent. Amplified RNA was fragmented and labeled using the NuGen FL-Ovation™ cDNA Biotin Module V2. Amplification and labeling were performed on a Beckman-Coulter ArrayPlex.
| | Sample_hyb_protocol | Procedure used standard Affymetrix protocol.
| | Sample_scan_protocol | Procedure used standard Affymetrix protocol.
| | Sample_data_processing | Scans were imported into Rosetta Resolver and pre-processed using the 'Resolver Affymetrix Rosetta Intensity Profile Builder (saves reporters)' pipeline
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jeannette,,Bigler
| | Sample_contact_email | jbigler@amgen.com
| | Sample_contact_institute | Amgen, Inc.
| | Sample_contact_address | 1201 Amgen Court West
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98119
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1021nnn/GSM1021355/suppl/GSM1021355_skn48484.CEL.gz
| | Sample_series_id | GSE41663
| | Sample_series_id | GSE41664
| | Sample_data_row_count | 54675
| | |
|
GSM1021356 | GPL570 |
|
PsOEt-21-Week 1
|
Lesional skin biopsy from psoriasis patient, Week1_etanercept
|
tissue type: Lesional skin
time: Week1_etanercept
|
L_LS_Wk1 in GSE11903 (GSM300816)
|
| Sample_geo_accession | GSM1021356
| | Sample_status | Public on Jan 28 2013
| | Sample_submission_date | Oct 17 2012
| | Sample_last_update_date | Jan 29 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extraction.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Total RNA was reverse-transcribed and amplified using the NuGen Ovation™ RNA amplification system V2 with Ovation™WB reagent. Amplified RNA was fragmented and labeled using the NuGen FL-Ovation™ cDNA Biotin Module V2. Amplification and labeling were performed on a Beckman-Coulter ArrayPlex.
| | Sample_hyb_protocol | Procedure used standard Affymetrix protocol.
| | Sample_scan_protocol | Procedure used standard Affymetrix protocol.
| | Sample_data_processing | Scans were imported into Rosetta Resolver and pre-processed using the 'Resolver Affymetrix Rosetta Intensity Profile Builder (saves reporters)' pipeline
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jeannette,,Bigler
| | Sample_contact_email | jbigler@amgen.com
| | Sample_contact_institute | Amgen, Inc.
| | Sample_contact_address | 1201 Amgen Court West
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98119
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1021nnn/GSM1021356/suppl/GSM1021356_skn48485.CEL.gz
| | Sample_series_id | GSE41663
| | Sample_series_id | GSE41664
| | Sample_data_row_count | 54675
| | |
|
GSM1021357 | GPL570 |
|
PsOEt-21-Week 2
|
Lesional skin biopsy from psoriasis patient, Week2_etanercept
|
tissue type: Lesional skin
time: Week2_etanercept
|
L_LS_Wk2 in GSE11903 (GSM300817)
|
| Sample_geo_accession | GSM1021357
| | Sample_status | Public on Jan 28 2013
| | Sample_submission_date | Oct 17 2012
| | Sample_last_update_date | Jan 29 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extraction.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Total RNA was reverse-transcribed and amplified using the NuGen Ovation™ RNA amplification system V2 with Ovation™WB reagent. Amplified RNA was fragmented and labeled using the NuGen FL-Ovation™ cDNA Biotin Module V2. Amplification and labeling were performed on a Beckman-Coulter ArrayPlex.
| | Sample_hyb_protocol | Procedure used standard Affymetrix protocol.
| | Sample_scan_protocol | Procedure used standard Affymetrix protocol.
| | Sample_data_processing | Scans were imported into Rosetta Resolver and pre-processed using the 'Resolver Affymetrix Rosetta Intensity Profile Builder (saves reporters)' pipeline
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jeannette,,Bigler
| | Sample_contact_email | jbigler@amgen.com
| | Sample_contact_institute | Amgen, Inc.
| | Sample_contact_address | 1201 Amgen Court West
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98119
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1021nnn/GSM1021357/suppl/GSM1021357_skn48486.CEL.gz
| | Sample_series_id | GSE41663
| | Sample_series_id | GSE41664
| | Sample_data_row_count | 54675
| | |
|
GSM1021358 | GPL570 |
|
PsOEt-21-Week 12
|
Lesional skin biopsy from psoriasis patient, Week12_etanercept
|
tissue type: Lesional skin
time: Week12_etanercept
|
L_LS_Wk12 in GSE11903 (GSM300819)
|
| Sample_geo_accession | GSM1021358
| | Sample_status | Public on Jan 28 2013
| | Sample_submission_date | Oct 17 2012
| | Sample_last_update_date | Jan 29 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extraction.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Total RNA was reverse-transcribed and amplified using the NuGen Ovation™ RNA amplification system V2 with Ovation™WB reagent. Amplified RNA was fragmented and labeled using the NuGen FL-Ovation™ cDNA Biotin Module V2. Amplification and labeling were performed on a Beckman-Coulter ArrayPlex.
| | Sample_hyb_protocol | Procedure used standard Affymetrix protocol.
| | Sample_scan_protocol | Procedure used standard Affymetrix protocol.
| | Sample_data_processing | Scans were imported into Rosetta Resolver and pre-processed using the 'Resolver Affymetrix Rosetta Intensity Profile Builder (saves reporters)' pipeline
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jeannette,,Bigler
| | Sample_contact_email | jbigler@amgen.com
| | Sample_contact_institute | Amgen, Inc.
| | Sample_contact_address | 1201 Amgen Court West
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98119
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1021nnn/GSM1021358/suppl/GSM1021358_skn48487.CEL.gz
| | Sample_series_id | GSE41663
| | Sample_series_id | GSE41664
| | Sample_data_row_count | 54675
| | |
|
GSM1021359 | GPL570 |
|
PsOEt-22-NL
|
Non-lesional skin biopsy from psoriasis patient, Pre-dose
|
tissue type: Non-lesional skin
time: Pre-dose
|
M_NL_Time0 in GSE11903 (GSM300820)
|
| Sample_geo_accession | GSM1021359
| | Sample_status | Public on Jan 28 2013
| | Sample_submission_date | Oct 17 2012
| | Sample_last_update_date | Jan 29 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extraction.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Total RNA was reverse-transcribed and amplified using the NuGen Ovation™ RNA amplification system V2 with Ovation™WB reagent. Amplified RNA was fragmented and labeled using the NuGen FL-Ovation™ cDNA Biotin Module V2. Amplification and labeling were performed on a Beckman-Coulter ArrayPlex.
| | Sample_hyb_protocol | Procedure used standard Affymetrix protocol.
| | Sample_scan_protocol | Procedure used standard Affymetrix protocol.
| | Sample_data_processing | Scans were imported into Rosetta Resolver and pre-processed using the 'Resolver Affymetrix Rosetta Intensity Profile Builder (saves reporters)' pipeline
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jeannette,,Bigler
| | Sample_contact_email | jbigler@amgen.com
| | Sample_contact_institute | Amgen, Inc.
| | Sample_contact_address | 1201 Amgen Court West
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98119
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1021nnn/GSM1021359/suppl/GSM1021359_skn48488.CEL.gz
| | Sample_series_id | GSE41663
| | Sample_series_id | GSE41664
| | Sample_data_row_count | 54675
| | |
|
GSM1021360 | GPL570 |
|
PsOEt-22-LS
|
Lesional skin biopsy from psoriasis patient, Pre-dose
|
tissue type: Lesional skin
time: Pre-dose
|
M_LS_Time0 in GSE11903 (GSM300821)
|
| Sample_geo_accession | GSM1021360
| | Sample_status | Public on Jan 28 2013
| | Sample_submission_date | Oct 17 2012
| | Sample_last_update_date | Jan 29 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extraction.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Total RNA was reverse-transcribed and amplified using the NuGen Ovation™ RNA amplification system V2 with Ovation™WB reagent. Amplified RNA was fragmented and labeled using the NuGen FL-Ovation™ cDNA Biotin Module V2. Amplification and labeling were performed on a Beckman-Coulter ArrayPlex.
| | Sample_hyb_protocol | Procedure used standard Affymetrix protocol.
| | Sample_scan_protocol | Procedure used standard Affymetrix protocol.
| | Sample_data_processing | Scans were imported into Rosetta Resolver and pre-processed using the 'Resolver Affymetrix Rosetta Intensity Profile Builder (saves reporters)' pipeline
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jeannette,,Bigler
| | Sample_contact_email | jbigler@amgen.com
| | Sample_contact_institute | Amgen, Inc.
| | Sample_contact_address | 1201 Amgen Court West
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98119
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1021nnn/GSM1021360/suppl/GSM1021360_skn48489.CEL.gz
| | Sample_series_id | GSE41663
| | Sample_series_id | GSE41664
| | Sample_data_row_count | 54675
| | |
|
GSM1021361 | GPL570 |
|
PsOEt-22-Week 1
|
Lesional skin biopsy from psoriasis patient, Week1_etanercept
|
tissue type: Lesional skin
time: Week1_etanercept
|
M_LS_Wk1 in GSE11903 (GSM300822)
|
| Sample_geo_accession | GSM1021361
| | Sample_status | Public on Jan 28 2013
| | Sample_submission_date | Oct 17 2012
| | Sample_last_update_date | Jan 29 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extraction.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Total RNA was reverse-transcribed and amplified using the NuGen Ovation™ RNA amplification system V2 with Ovation™WB reagent. Amplified RNA was fragmented and labeled using the NuGen FL-Ovation™ cDNA Biotin Module V2. Amplification and labeling were performed on a Beckman-Coulter ArrayPlex.
| | Sample_hyb_protocol | Procedure used standard Affymetrix protocol.
| | Sample_scan_protocol | Procedure used standard Affymetrix protocol.
| | Sample_data_processing | Scans were imported into Rosetta Resolver and pre-processed using the 'Resolver Affymetrix Rosetta Intensity Profile Builder (saves reporters)' pipeline
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jeannette,,Bigler
| | Sample_contact_email | jbigler@amgen.com
| | Sample_contact_institute | Amgen, Inc.
| | Sample_contact_address | 1201 Amgen Court West
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98119
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1021nnn/GSM1021361/suppl/GSM1021361_skn48490.CEL.gz
| | Sample_series_id | GSE41663
| | Sample_series_id | GSE41664
| | Sample_data_row_count | 54675
| | |
|
GSM1021362 | GPL570 |
|
PsOEt-22-Week 2
|
Lesional skin biopsy from psoriasis patient, Week2_etanercept
|
tissue type: Lesional skin
time: Week2_etanercept
|
M_LS_Wk2 in GSE11903 (GSM300823)
|
| Sample_geo_accession | GSM1021362
| | Sample_status | Public on Jan 28 2013
| | Sample_submission_date | Oct 17 2012
| | Sample_last_update_date | Jan 29 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extraction.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Total RNA was reverse-transcribed and amplified using the NuGen Ovation™ RNA amplification system V2 with Ovation™WB reagent. Amplified RNA was fragmented and labeled using the NuGen FL-Ovation™ cDNA Biotin Module V2. Amplification and labeling were performed on a Beckman-Coulter ArrayPlex.
| | Sample_hyb_protocol | Procedure used standard Affymetrix protocol.
| | Sample_scan_protocol | Procedure used standard Affymetrix protocol.
| | Sample_data_processing | Scans were imported into Rosetta Resolver and pre-processed using the 'Resolver Affymetrix Rosetta Intensity Profile Builder (saves reporters)' pipeline
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jeannette,,Bigler
| | Sample_contact_email | jbigler@amgen.com
| | Sample_contact_institute | Amgen, Inc.
| | Sample_contact_address | 1201 Amgen Court West
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98119
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1021nnn/GSM1021362/suppl/GSM1021362_skn48491.CEL.gz
| | Sample_series_id | GSE41663
| | Sample_series_id | GSE41664
| | Sample_data_row_count | 54675
| | |
|
GSM1021363 | GPL570 |
|
PsOEt-22-Week 4
|
Lesional skin biopsy from psoriasis patient, Week4_etanercept
|
tissue type: Lesional skin
time: Week4_etanercept
|
M_LS_Wk4 in GSE11903 (GSM300824)
|
| Sample_geo_accession | GSM1021363
| | Sample_status | Public on Jan 28 2013
| | Sample_submission_date | Oct 17 2012
| | Sample_last_update_date | Jan 29 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extraction.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Total RNA was reverse-transcribed and amplified using the NuGen Ovation™ RNA amplification system V2 with Ovation™WB reagent. Amplified RNA was fragmented and labeled using the NuGen FL-Ovation™ cDNA Biotin Module V2. Amplification and labeling were performed on a Beckman-Coulter ArrayPlex.
| | Sample_hyb_protocol | Procedure used standard Affymetrix protocol.
| | Sample_scan_protocol | Procedure used standard Affymetrix protocol.
| | Sample_data_processing | Scans were imported into Rosetta Resolver and pre-processed using the 'Resolver Affymetrix Rosetta Intensity Profile Builder (saves reporters)' pipeline
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jeannette,,Bigler
| | Sample_contact_email | jbigler@amgen.com
| | Sample_contact_institute | Amgen, Inc.
| | Sample_contact_address | 1201 Amgen Court West
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98119
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1021nnn/GSM1021363/suppl/GSM1021363_skn48492.CEL.gz
| | Sample_series_id | GSE41663
| | Sample_series_id | GSE41664
| | Sample_data_row_count | 54675
| | |
|
GSM1021364 | GPL570 |
|
PsOEt-22-Week 12
|
Lesional skin biopsy from psoriasis patient, Week12_etanercept
|
tissue type: Lesional skin
time: Week12_etanercept
|
M_LS_Wk12 in GSE11903 (GSM300825)
|
| Sample_geo_accession | GSM1021364
| | Sample_status | Public on Jan 28 2013
| | Sample_submission_date | Oct 17 2012
| | Sample_last_update_date | Jan 29 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extraction.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Total RNA was reverse-transcribed and amplified using the NuGen Ovation™ RNA amplification system V2 with Ovation™WB reagent. Amplified RNA was fragmented and labeled using the NuGen FL-Ovation™ cDNA Biotin Module V2. Amplification and labeling were performed on a Beckman-Coulter ArrayPlex.
| | Sample_hyb_protocol | Procedure used standard Affymetrix protocol.
| | Sample_scan_protocol | Procedure used standard Affymetrix protocol.
| | Sample_data_processing | Scans were imported into Rosetta Resolver and pre-processed using the 'Resolver Affymetrix Rosetta Intensity Profile Builder (saves reporters)' pipeline
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jeannette,,Bigler
| | Sample_contact_email | jbigler@amgen.com
| | Sample_contact_institute | Amgen, Inc.
| | Sample_contact_address | 1201 Amgen Court West
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98119
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1021nnn/GSM1021364/suppl/GSM1021364_skn48493.CEL.gz
| | Sample_series_id | GSE41663
| | Sample_series_id | GSE41664
| | Sample_data_row_count | 54675
| | |
|
GSM1021365 | GPL570 |
|
PsOEt-23-NL
|
Non-lesional skin biopsy from psoriasis patient, Pre-dose
|
tissue type: Non-lesional skin
time: Pre-dose
|
N_NL_Time0 in GSE11903 (GSM300826)
|
| Sample_geo_accession | GSM1021365
| | Sample_status | Public on Jan 28 2013
| | Sample_submission_date | Oct 17 2012
| | Sample_last_update_date | Jan 29 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extraction.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Total RNA was reverse-transcribed and amplified using the NuGen Ovation™ RNA amplification system V2 with Ovation™WB reagent. Amplified RNA was fragmented and labeled using the NuGen FL-Ovation™ cDNA Biotin Module V2. Amplification and labeling were performed on a Beckman-Coulter ArrayPlex.
| | Sample_hyb_protocol | Procedure used standard Affymetrix protocol.
| | Sample_scan_protocol | Procedure used standard Affymetrix protocol.
| | Sample_data_processing | Scans were imported into Rosetta Resolver and pre-processed using the 'Resolver Affymetrix Rosetta Intensity Profile Builder (saves reporters)' pipeline
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jeannette,,Bigler
| | Sample_contact_email | jbigler@amgen.com
| | Sample_contact_institute | Amgen, Inc.
| | Sample_contact_address | 1201 Amgen Court West
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98119
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1021nnn/GSM1021365/suppl/GSM1021365_skn48494.CEL.gz
| | Sample_series_id | GSE41663
| | Sample_series_id | GSE41664
| | Sample_data_row_count | 54675
| | |
|
GSM1021366 | GPL570 |
|
PsOEt-23-LS
|
Lesional skin biopsy from psoriasis patient, Pre-dose
|
tissue type: Lesional skin
time: Pre-dose
|
N_LS_Time0 in GSE11903 (GSM300827)
|
| Sample_geo_accession | GSM1021366
| | Sample_status | Public on Jan 28 2013
| | Sample_submission_date | Oct 17 2012
| | Sample_last_update_date | Jan 29 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extraction.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Total RNA was reverse-transcribed and amplified using the NuGen Ovation™ RNA amplification system V2 with Ovation™WB reagent. Amplified RNA was fragmented and labeled using the NuGen FL-Ovation™ cDNA Biotin Module V2. Amplification and labeling were performed on a Beckman-Coulter ArrayPlex.
| | Sample_hyb_protocol | Procedure used standard Affymetrix protocol.
| | Sample_scan_protocol | Procedure used standard Affymetrix protocol.
| | Sample_data_processing | Scans were imported into Rosetta Resolver and pre-processed using the 'Resolver Affymetrix Rosetta Intensity Profile Builder (saves reporters)' pipeline
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jeannette,,Bigler
| | Sample_contact_email | jbigler@amgen.com
| | Sample_contact_institute | Amgen, Inc.
| | Sample_contact_address | 1201 Amgen Court West
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98119
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1021nnn/GSM1021366/suppl/GSM1021366_skn48495.CEL.gz
| | Sample_series_id | GSE41663
| | Sample_series_id | GSE41664
| | Sample_data_row_count | 54675
| | |
|
GSM1021367 | GPL570 |
|
PsOEt-23-Week 1
|
Lesional skin biopsy from psoriasis patient, Week1_etanercept
|
tissue type: Lesional skin
time: Week1_etanercept
|
N_LS_Wk1 in GSE11903 (GSM300828)
|
| Sample_geo_accession | GSM1021367
| | Sample_status | Public on Jan 28 2013
| | Sample_submission_date | Oct 17 2012
| | Sample_last_update_date | Jan 29 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extraction.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Total RNA was reverse-transcribed and amplified using the NuGen Ovation™ RNA amplification system V2 with Ovation™WB reagent. Amplified RNA was fragmented and labeled using the NuGen FL-Ovation™ cDNA Biotin Module V2. Amplification and labeling were performed on a Beckman-Coulter ArrayPlex.
| | Sample_hyb_protocol | Procedure used standard Affymetrix protocol.
| | Sample_scan_protocol | Procedure used standard Affymetrix protocol.
| | Sample_data_processing | Scans were imported into Rosetta Resolver and pre-processed using the 'Resolver Affymetrix Rosetta Intensity Profile Builder (saves reporters)' pipeline
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jeannette,,Bigler
| | Sample_contact_email | jbigler@amgen.com
| | Sample_contact_institute | Amgen, Inc.
| | Sample_contact_address | 1201 Amgen Court West
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98119
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1021nnn/GSM1021367/suppl/GSM1021367_skn48496.CEL.gz
| | Sample_series_id | GSE41663
| | Sample_series_id | GSE41664
| | Sample_data_row_count | 54675
| | |
|
GSM1021368 | GPL570 |
|
PsOEt-23-Week 2
|
Lesional skin biopsy from psoriasis patient, Week2_etanercept
|
tissue type: Lesional skin
time: Week2_etanercept
|
N_LS_Wk2 in GSE11903 (GSM300829)
|
| Sample_geo_accession | GSM1021368
| | Sample_status | Public on Jan 28 2013
| | Sample_submission_date | Oct 17 2012
| | Sample_last_update_date | Jan 29 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extraction.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Total RNA was reverse-transcribed and amplified using the NuGen Ovation™ RNA amplification system V2 with Ovation™WB reagent. Amplified RNA was fragmented and labeled using the NuGen FL-Ovation™ cDNA Biotin Module V2. Amplification and labeling were performed on a Beckman-Coulter ArrayPlex.
| | Sample_hyb_protocol | Procedure used standard Affymetrix protocol.
| | Sample_scan_protocol | Procedure used standard Affymetrix protocol.
| | Sample_data_processing | Scans were imported into Rosetta Resolver and pre-processed using the 'Resolver Affymetrix Rosetta Intensity Profile Builder (saves reporters)' pipeline
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jeannette,,Bigler
| | Sample_contact_email | jbigler@amgen.com
| | Sample_contact_institute | Amgen, Inc.
| | Sample_contact_address | 1201 Amgen Court West
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98119
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1021nnn/GSM1021368/suppl/GSM1021368_skn48497.CEL.gz
| | Sample_series_id | GSE41663
| | Sample_series_id | GSE41664
| | Sample_data_row_count | 54675
| | |
|
GSM1021369 | GPL570 |
|
PsOEt-23-Week 4
|
Lesional skin biopsy from psoriasis patient, Week4_etanercept
|
tissue type: Lesional skin
time: Week4_etanercept
|
N_LS_Wk4 in GSE11903 (GSM300830)
|
| Sample_geo_accession | GSM1021369
| | Sample_status | Public on Jan 28 2013
| | Sample_submission_date | Oct 17 2012
| | Sample_last_update_date | Jan 29 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extraction.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Total RNA was reverse-transcribed and amplified using the NuGen Ovation™ RNA amplification system V2 with Ovation™WB reagent. Amplified RNA was fragmented and labeled using the NuGen FL-Ovation™ cDNA Biotin Module V2. Amplification and labeling were performed on a Beckman-Coulter ArrayPlex.
| | Sample_hyb_protocol | Procedure used standard Affymetrix protocol.
| | Sample_scan_protocol | Procedure used standard Affymetrix protocol.
| | Sample_data_processing | Scans were imported into Rosetta Resolver and pre-processed using the 'Resolver Affymetrix Rosetta Intensity Profile Builder (saves reporters)' pipeline
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jeannette,,Bigler
| | Sample_contact_email | jbigler@amgen.com
| | Sample_contact_institute | Amgen, Inc.
| | Sample_contact_address | 1201 Amgen Court West
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98119
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1021nnn/GSM1021369/suppl/GSM1021369_skn48498.CEL.gz
| | Sample_series_id | GSE41663
| | Sample_series_id | GSE41664
| | Sample_data_row_count | 54675
| | |
|
GSM1021370 | GPL570 |
|
PsOEt-23-Week 12
|
Lesional skin biopsy from psoriasis patient, Week12_etanercept
|
tissue type: Lesional skin
time: Week12_etanercept
|
N_LS_Wk12 in GSE11903 (GSM300831)
|
| Sample_geo_accession | GSM1021370
| | Sample_status | Public on Jan 28 2013
| | Sample_submission_date | Oct 17 2012
| | Sample_last_update_date | Jan 29 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extraction.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Total RNA was reverse-transcribed and amplified using the NuGen Ovation™ RNA amplification system V2 with Ovation™WB reagent. Amplified RNA was fragmented and labeled using the NuGen FL-Ovation™ cDNA Biotin Module V2. Amplification and labeling were performed on a Beckman-Coulter ArrayPlex.
| | Sample_hyb_protocol | Procedure used standard Affymetrix protocol.
| | Sample_scan_protocol | Procedure used standard Affymetrix protocol.
| | Sample_data_processing | Scans were imported into Rosetta Resolver and pre-processed using the 'Resolver Affymetrix Rosetta Intensity Profile Builder (saves reporters)' pipeline
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jeannette,,Bigler
| | Sample_contact_email | jbigler@amgen.com
| | Sample_contact_institute | Amgen, Inc.
| | Sample_contact_address | 1201 Amgen Court West
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98119
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1021nnn/GSM1021370/suppl/GSM1021370_skn48499.CEL.gz
| | Sample_series_id | GSE41663
| | Sample_series_id | GSE41664
| | Sample_data_row_count | 54675
| | |
|
GSM1021371 | GPL570 |
|
PsOEt-24-NL
|
Non-lesional skin biopsy from psoriasis patient, Pre-dose
|
tissue type: Non-lesional skin
time: Pre-dose
|
O_NL_Time0 in GSE11903 (GSM300832)
|
| Sample_geo_accession | GSM1021371
| | Sample_status | Public on Jan 28 2013
| | Sample_submission_date | Oct 17 2012
| | Sample_last_update_date | Jan 29 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extraction.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Total RNA was reverse-transcribed and amplified using the NuGen Ovation™ RNA amplification system V2 with Ovation™WB reagent. Amplified RNA was fragmented and labeled using the NuGen FL-Ovation™ cDNA Biotin Module V2. Amplification and labeling were performed on a Beckman-Coulter ArrayPlex.
| | Sample_hyb_protocol | Procedure used standard Affymetrix protocol.
| | Sample_scan_protocol | Procedure used standard Affymetrix protocol.
| | Sample_data_processing | Scans were imported into Rosetta Resolver and pre-processed using the 'Resolver Affymetrix Rosetta Intensity Profile Builder (saves reporters)' pipeline
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jeannette,,Bigler
| | Sample_contact_email | jbigler@amgen.com
| | Sample_contact_institute | Amgen, Inc.
| | Sample_contact_address | 1201 Amgen Court West
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98119
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1021nnn/GSM1021371/suppl/GSM1021371_skn48503.CEL.gz
| | Sample_series_id | GSE41663
| | Sample_series_id | GSE41664
| | Sample_data_row_count | 54675
| | |
|
GSM1021372 | GPL570 |
|
PsOEt-24-LS
|
Lesional skin biopsy from psoriasis patient, Pre-dose
|
tissue type: Lesional skin
time: Pre-dose
|
O_LS_Time0 in GSE11903 (GSM300833)
|
| Sample_geo_accession | GSM1021372
| | Sample_status | Public on Jan 28 2013
| | Sample_submission_date | Oct 17 2012
| | Sample_last_update_date | Jan 29 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extraction.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Total RNA was reverse-transcribed and amplified using the NuGen Ovation™ RNA amplification system V2 with Ovation™WB reagent. Amplified RNA was fragmented and labeled using the NuGen FL-Ovation™ cDNA Biotin Module V2. Amplification and labeling were performed on a Beckman-Coulter ArrayPlex.
| | Sample_hyb_protocol | Procedure used standard Affymetrix protocol.
| | Sample_scan_protocol | Procedure used standard Affymetrix protocol.
| | Sample_data_processing | Scans were imported into Rosetta Resolver and pre-processed using the 'Resolver Affymetrix Rosetta Intensity Profile Builder (saves reporters)' pipeline
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jeannette,,Bigler
| | Sample_contact_email | jbigler@amgen.com
| | Sample_contact_institute | Amgen, Inc.
| | Sample_contact_address | 1201 Amgen Court West
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98119
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1021nnn/GSM1021372/suppl/GSM1021372_skn48504.CEL.gz
| | Sample_series_id | GSE41663
| | Sample_series_id | GSE41664
| | Sample_data_row_count | 54675
| | |
|
GSM1021373 | GPL570 |
|
PsOEt-24-Week 1
|
Lesional skin biopsy from psoriasis patient, Week1_etanercept
|
tissue type: Lesional skin
time: Week1_etanercept
|
O_LS_Wk1 in GSE11903 (GSM300834)
|
| Sample_geo_accession | GSM1021373
| | Sample_status | Public on Jan 28 2013
| | Sample_submission_date | Oct 17 2012
| | Sample_last_update_date | Jan 29 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extraction.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Total RNA was reverse-transcribed and amplified using the NuGen Ovation™ RNA amplification system V2 with Ovation™WB reagent. Amplified RNA was fragmented and labeled using the NuGen FL-Ovation™ cDNA Biotin Module V2. Amplification and labeling were performed on a Beckman-Coulter ArrayPlex.
| | Sample_hyb_protocol | Procedure used standard Affymetrix protocol.
| | Sample_scan_protocol | Procedure used standard Affymetrix protocol.
| | Sample_data_processing | Scans were imported into Rosetta Resolver and pre-processed using the 'Resolver Affymetrix Rosetta Intensity Profile Builder (saves reporters)' pipeline
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jeannette,,Bigler
| | Sample_contact_email | jbigler@amgen.com
| | Sample_contact_institute | Amgen, Inc.
| | Sample_contact_address | 1201 Amgen Court West
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98119
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1021nnn/GSM1021373/suppl/GSM1021373_skn48505.CEL.gz
| | Sample_series_id | GSE41663
| | Sample_series_id | GSE41664
| | Sample_data_row_count | 54675
| | |
|
GSM1021374 | GPL570 |
|
PsOEt-24-Week 2
|
Lesional skin biopsy from psoriasis patient, Week2_etanercept
|
tissue type: Lesional skin
time: Week2_etanercept
|
O_LS_Wk2 in GSE11903 (GSM300835)
|
| Sample_geo_accession | GSM1021374
| | Sample_status | Public on Jan 28 2013
| | Sample_submission_date | Oct 17 2012
| | Sample_last_update_date | Jan 29 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extraction.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Total RNA was reverse-transcribed and amplified using the NuGen Ovation™ RNA amplification system V2 with Ovation™WB reagent. Amplified RNA was fragmented and labeled using the NuGen FL-Ovation™ cDNA Biotin Module V2. Amplification and labeling were performed on a Beckman-Coulter ArrayPlex.
| | Sample_hyb_protocol | Procedure used standard Affymetrix protocol.
| | Sample_scan_protocol | Procedure used standard Affymetrix protocol.
| | Sample_data_processing | Scans were imported into Rosetta Resolver and pre-processed using the 'Resolver Affymetrix Rosetta Intensity Profile Builder (saves reporters)' pipeline
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jeannette,,Bigler
| | Sample_contact_email | jbigler@amgen.com
| | Sample_contact_institute | Amgen, Inc.
| | Sample_contact_address | 1201 Amgen Court West
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98119
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1021nnn/GSM1021374/suppl/GSM1021374_skn48506.CEL.gz
| | Sample_series_id | GSE41663
| | Sample_series_id | GSE41664
| | Sample_data_row_count | 54675
| | |
|
GSM1021375 | GPL570 |
|
PsOEt-24-Week 4
|
Lesional skin biopsy from psoriasis patient, Week4_etanercept
|
tissue type: Lesional skin
time: Week4_etanercept
|
O_LS_Wk4 in GSE11903 (GSM300836)
|
| Sample_geo_accession | GSM1021375
| | Sample_status | Public on Jan 28 2013
| | Sample_submission_date | Oct 17 2012
| | Sample_last_update_date | Jan 29 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extraction.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Total RNA was reverse-transcribed and amplified using the NuGen Ovation™ RNA amplification system V2 with Ovation™WB reagent. Amplified RNA was fragmented and labeled using the NuGen FL-Ovation™ cDNA Biotin Module V2. Amplification and labeling were performed on a Beckman-Coulter ArrayPlex.
| | Sample_hyb_protocol | Procedure used standard Affymetrix protocol.
| | Sample_scan_protocol | Procedure used standard Affymetrix protocol.
| | Sample_data_processing | Scans were imported into Rosetta Resolver and pre-processed using the 'Resolver Affymetrix Rosetta Intensity Profile Builder (saves reporters)' pipeline
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jeannette,,Bigler
| | Sample_contact_email | jbigler@amgen.com
| | Sample_contact_institute | Amgen, Inc.
| | Sample_contact_address | 1201 Amgen Court West
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98119
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1021nnn/GSM1021375/suppl/GSM1021375_skn48507.CEL.gz
| | Sample_series_id | GSE41663
| | Sample_series_id | GSE41664
| | Sample_data_row_count | 54675
| | |
|
GSM1021376 | GPL570 |
|
PsOEt-24-Week 12
|
Lesional skin biopsy from psoriasis patient, Week12_etanercept
|
tissue type: Lesional skin
time: Week12_etanercept
|
O_LS_Wk12 in GSE11903 (GSM300837)
|
| Sample_geo_accession | GSM1021376
| | Sample_status | Public on Jan 28 2013
| | Sample_submission_date | Oct 17 2012
| | Sample_last_update_date | Jan 29 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extraction.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Total RNA was reverse-transcribed and amplified using the NuGen Ovation™ RNA amplification system V2 with Ovation™WB reagent. Amplified RNA was fragmented and labeled using the NuGen FL-Ovation™ cDNA Biotin Module V2. Amplification and labeling were performed on a Beckman-Coulter ArrayPlex.
| | Sample_hyb_protocol | Procedure used standard Affymetrix protocol.
| | Sample_scan_protocol | Procedure used standard Affymetrix protocol.
| | Sample_data_processing | Scans were imported into Rosetta Resolver and pre-processed using the 'Resolver Affymetrix Rosetta Intensity Profile Builder (saves reporters)' pipeline
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jeannette,,Bigler
| | Sample_contact_email | jbigler@amgen.com
| | Sample_contact_institute | Amgen, Inc.
| | Sample_contact_address | 1201 Amgen Court West
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98119
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1021nnn/GSM1021376/suppl/GSM1021376_skn48508.CEL.gz
| | Sample_series_id | GSE41663
| | Sample_series_id | GSE41664
| | Sample_data_row_count | 54675
| | |
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