Search results for the GEO ID: GSE41688  |
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GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM1022696 | GPL1261 |
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H2B GFP colon High
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Non-proliferating cells in normal mouse colon
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gender: Male
tissue type: colon
genotype/variation: H2B-GFP
cell type: non-proliferating colonic crypt cells
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| Sample_geo_accession | GSM1022696
| | Sample_status | Public on Jan 22 2013
| | Sample_submission_date | Oct 18 2012
| | Sample_last_update_date | Jan 22 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotin-labeled cRNA was prepared using a MessageAmp™ II-Biotin Enhanced kit (Ambion).
| | Sample_hyb_protocol | Twenty microgram of labeled cRNA was fragmented, and hybridized to GeneChips.
| | Sample_scan_protocol | The arrays were stained and scanned by GeneChip® Scanner 3000 according to the protocol from Affymetrix.
| | Sample_data_processing | The data were processed using GeneChip Operating Software. GCRMA normalization performed in GeneSpring.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Yasuhiro,,Yamada
| | Sample_contact_email | y-yamada@cira.kyoto-u.ac.jp
| | Sample_contact_laboratory | Yamada
| | Sample_contact_department | CiRA
| | Sample_contact_institute | Kyoto University
| | Sample_contact_address | 53 Kawahara-cho, Shogoin, Sakyo-ku
| | Sample_contact_city | Kyoto
| | Sample_contact_zip/postal_code | 606-8507
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1022nnn/GSM1022696/suppl/GSM1022696_2L.CEL.gz
| | Sample_series_id | GSE41688
| | Sample_data_row_count | 45101
| | |
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GSM1022697 | GPL1261 |
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H2B GFP colon Low
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Proliferating cells in normal mouse colon
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gender: Male
tissue type: colon
genotype/variation: H2B-GFP
cell type: proliferating colonic crypt cells
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| Sample_geo_accession | GSM1022697
| | Sample_status | Public on Jan 22 2013
| | Sample_submission_date | Oct 18 2012
| | Sample_last_update_date | Jan 22 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotin-labeled cRNA was prepared using a MessageAmp™ II-Biotin Enhanced kit (Ambion).
| | Sample_hyb_protocol | Twenty microgram of labeled cRNA was fragmented, and hybridized to GeneChips.
| | Sample_scan_protocol | The arrays were stained and scanned by GeneChip® Scanner 3000 according to the protocol from Affymetrix.
| | Sample_data_processing | The data were processed using GeneChip Operating Software. GCRMA normalization performed in GeneSpring.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Yasuhiro,,Yamada
| | Sample_contact_email | y-yamada@cira.kyoto-u.ac.jp
| | Sample_contact_laboratory | Yamada
| | Sample_contact_department | CiRA
| | Sample_contact_institute | Kyoto University
| | Sample_contact_address | 53 Kawahara-cho, Shogoin, Sakyo-ku
| | Sample_contact_city | Kyoto
| | Sample_contact_zip/postal_code | 606-8507
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1022nnn/GSM1022697/suppl/GSM1022697_2R.CEL.gz
| | Sample_series_id | GSE41688
| | Sample_data_row_count | 45101
| | |
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GSM1022698 | GPL1261 |
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colon Dox -
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Mouse colonic epithelium without β-catenin induction
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gender: Male
tissue type: colon
genotype/variation: doxycycline-inducible β-catenin
cell type: Wnt-non-activated colonic crypt cells
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| Sample_geo_accession | GSM1022698
| | Sample_status | Public on Jan 22 2013
| | Sample_submission_date | Oct 18 2012
| | Sample_last_update_date | Jan 22 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotin-labeled cRNA was prepared using a MessageAmp™ II-Biotin Enhanced kit (Ambion).
| | Sample_hyb_protocol | Twenty microgram of labeled cRNA was fragmented, and hybridized to GeneChips.
| | Sample_scan_protocol | The arrays were stained and scanned by GeneChip® Scanner 3000 according to the protocol from Affymetrix.
| | Sample_data_processing | The data were processed using GeneChip Operating Software. GCRMA normalization performed in GeneSpring.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Yasuhiro,,Yamada
| | Sample_contact_email | y-yamada@cira.kyoto-u.ac.jp
| | Sample_contact_laboratory | Yamada
| | Sample_contact_department | CiRA
| | Sample_contact_institute | Kyoto University
| | Sample_contact_address | 53 Kawahara-cho, Shogoin, Sakyo-ku
| | Sample_contact_city | Kyoto
| | Sample_contact_zip/postal_code | 606-8507
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1022nnn/GSM1022698/suppl/GSM1022698_2.CEL.gz
| | Sample_series_id | GSE41688
| | Sample_data_row_count | 45101
| | |
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GSM1022699 | GPL1261 |
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colon Dox +
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Mouse colonic epithelium with β-catenin induction
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gender: Male
tissue type: colon
genotype/variation: doxycycline-inducible β-catenin
cell type: Wnt-activated colonic crypt cells
|
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| Sample_geo_accession | GSM1022699
| | Sample_status | Public on Jan 22 2013
| | Sample_submission_date | Oct 18 2012
| | Sample_last_update_date | Jan 22 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotin-labeled cRNA was prepared using a MessageAmp™ II-Biotin Enhanced kit (Ambion).
| | Sample_hyb_protocol | Twenty microgram of labeled cRNA was fragmented, and hybridized to GeneChips.
| | Sample_scan_protocol | The arrays were stained and scanned by GeneChip® Scanner 3000 according to the protocol from Affymetrix.
| | Sample_data_processing | The data were processed using GeneChip Operating Software. GCRMA normalization performed in GeneSpring.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Yasuhiro,,Yamada
| | Sample_contact_email | y-yamada@cira.kyoto-u.ac.jp
| | Sample_contact_laboratory | Yamada
| | Sample_contact_department | CiRA
| | Sample_contact_institute | Kyoto University
| | Sample_contact_address | 53 Kawahara-cho, Shogoin, Sakyo-ku
| | Sample_contact_city | Kyoto
| | Sample_contact_zip/postal_code | 606-8507
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1022nnn/GSM1022699/suppl/GSM1022699_8.CEL.gz
| | Sample_series_id | GSE41688
| | Sample_data_row_count | 45101
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