Search results for the GEO ID: GSE41734  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM1023371 | GPL1355 |
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Liver, control diet administrated for 2 weeks, biological rep1
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Liver, fed control CRF-1 diet for 2 weeks
|
gender: Male
strain: Sprague-Dawley
tissue: Liver
age: 7 weeks
|
No additional information
|
| Sample_geo_accession | GSM1023371
| | Sample_status | Public on Apr 24 2013
| | Sample_submission_date | Oct 22 2012
| | Sample_last_update_date | Apr 24 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolatedusing Trizol reagent (Invitrogen Life Technologies Corp.), then purified with an RNeasy mini kit (Qiagen K.K., Tokyo, Japan).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | biotinylated aRNA was obtained from 100 ng of purified total RNA using a GeneChip 3’ IVT Express Kit (Affymetrix, Santa Clara, CA, USA).
| | Sample_hyb_protocol | Following fragmentation, 12.5 µg cRNA were hybridized for 16 hr at 45°C on Affymetrix GeneChip Rat Genome 230 2.0 Array. GeneChips were washed and stained in the Affymetrix GeneChip Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | CEL files were quantified with the Factor Analysis for Robust Microarray Summarization (FARMS) method, using the statistical language R and Bioconductor.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Yuji,,Nakai
| | Sample_contact_institute | The University of Tokyo
| | Sample_contact_address | 1-1-1, Yayoi
| | Sample_contact_city | Bunkyo-ku
| | Sample_contact_state | Tokyo
| | Sample_contact_zip/postal_code | 113-8657
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1023nnn/GSM1023371/suppl/GSM1023371_C_1.CEL.gz
| | Sample_series_id | GSE41734
| | Sample_data_row_count | 31099
| | |
|
GSM1023372 | GPL1355 |
|
Liver, control diet administrated for 2 weeks, biological rep2
|
Liver, fed control CRF-1 diet for 2 weeks
|
gender: Male
strain: Sprague-Dawley
tissue: Liver
age: 7 weeks
|
No additional information
|
| Sample_geo_accession | GSM1023372
| | Sample_status | Public on Apr 24 2013
| | Sample_submission_date | Oct 22 2012
| | Sample_last_update_date | Apr 24 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolatedusing Trizol reagent (Invitrogen Life Technologies Corp.), then purified with an RNeasy mini kit (Qiagen K.K., Tokyo, Japan).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | biotinylated aRNA was obtained from 100 ng of purified total RNA using a GeneChip 3’ IVT Express Kit (Affymetrix, Santa Clara, CA, USA).
| | Sample_hyb_protocol | Following fragmentation, 12.5 µg cRNA were hybridized for 16 hr at 45°C on Affymetrix GeneChip Rat Genome 230 2.0 Array. GeneChips were washed and stained in the Affymetrix GeneChip Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | CEL files were quantified with the Factor Analysis for Robust Microarray Summarization (FARMS) method, using the statistical language R and Bioconductor.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Yuji,,Nakai
| | Sample_contact_institute | The University of Tokyo
| | Sample_contact_address | 1-1-1, Yayoi
| | Sample_contact_city | Bunkyo-ku
| | Sample_contact_state | Tokyo
| | Sample_contact_zip/postal_code | 113-8657
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1023nnn/GSM1023372/suppl/GSM1023372_C_2.CEL.gz
| | Sample_series_id | GSE41734
| | Sample_data_row_count | 31099
| | |
|
GSM1023373 | GPL1355 |
|
Liver, control diet administrated for 2 weeks, biological rep3
|
Liver, fed control CRF-1 diet for 2 weeks
|
gender: Male
strain: Sprague-Dawley
tissue: Liver
age: 7 weeks
|
No additional information
|
| Sample_geo_accession | GSM1023373
| | Sample_status | Public on Apr 24 2013
| | Sample_submission_date | Oct 22 2012
| | Sample_last_update_date | Apr 24 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolatedusing Trizol reagent (Invitrogen Life Technologies Corp.), then purified with an RNeasy mini kit (Qiagen K.K., Tokyo, Japan).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | biotinylated aRNA was obtained from 100 ng of purified total RNA using a GeneChip 3’ IVT Express Kit (Affymetrix, Santa Clara, CA, USA).
| | Sample_hyb_protocol | Following fragmentation, 12.5 µg cRNA were hybridized for 16 hr at 45°C on Affymetrix GeneChip Rat Genome 230 2.0 Array. GeneChips were washed and stained in the Affymetrix GeneChip Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | CEL files were quantified with the Factor Analysis for Robust Microarray Summarization (FARMS) method, using the statistical language R and Bioconductor.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Yuji,,Nakai
| | Sample_contact_institute | The University of Tokyo
| | Sample_contact_address | 1-1-1, Yayoi
| | Sample_contact_city | Bunkyo-ku
| | Sample_contact_state | Tokyo
| | Sample_contact_zip/postal_code | 113-8657
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1023nnn/GSM1023373/suppl/GSM1023373_C_3.CEL.gz
| | Sample_series_id | GSE41734
| | Sample_data_row_count | 31099
| | |
|
GSM1023374 | GPL1355 |
|
Liver, control diet administrated for 2 weeks, biological rep4
|
Liver, fed control CRF-1 diet for 2 weeks
|
gender: Male
strain: Sprague-Dawley
tissue: Liver
age: 7 weeks
|
No additional information
|
| Sample_geo_accession | GSM1023374
| | Sample_status | Public on Apr 24 2013
| | Sample_submission_date | Oct 22 2012
| | Sample_last_update_date | Apr 24 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolatedusing Trizol reagent (Invitrogen Life Technologies Corp.), then purified with an RNeasy mini kit (Qiagen K.K., Tokyo, Japan).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | biotinylated aRNA was obtained from 100 ng of purified total RNA using a GeneChip 3’ IVT Express Kit (Affymetrix, Santa Clara, CA, USA).
| | Sample_hyb_protocol | Following fragmentation, 12.5 µg cRNA were hybridized for 16 hr at 45°C on Affymetrix GeneChip Rat Genome 230 2.0 Array. GeneChips were washed and stained in the Affymetrix GeneChip Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | CEL files were quantified with the Factor Analysis for Robust Microarray Summarization (FARMS) method, using the statistical language R and Bioconductor.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Yuji,,Nakai
| | Sample_contact_institute | The University of Tokyo
| | Sample_contact_address | 1-1-1, Yayoi
| | Sample_contact_city | Bunkyo-ku
| | Sample_contact_state | Tokyo
| | Sample_contact_zip/postal_code | 113-8657
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1023nnn/GSM1023374/suppl/GSM1023374_C_4.CEL.gz
| | Sample_series_id | GSE41734
| | Sample_data_row_count | 31099
| | |
|
GSM1023375 | GPL1355 |
|
Liver, Lactobacillus brevis119-2 containing diet administrated for 2 weeks, biological rep1
|
Liver, fed Lactobacillus brevis119-2 containing diet for 2 weeks
|
gender: Male
strain: Sprague-Dawley
tissue: Liver
age: 7 weeks
|
No additional information
|
| Sample_geo_accession | GSM1023375
| | Sample_status | Public on Apr 24 2013
| | Sample_submission_date | Oct 22 2012
| | Sample_last_update_date | Apr 24 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolatedusing Trizol reagent (Invitrogen Life Technologies Corp.), then purified with an RNeasy mini kit (Qiagen K.K., Tokyo, Japan).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | biotinylated aRNA was obtained from 100 ng of purified total RNA using a GeneChip 3’ IVT Express Kit (Affymetrix, Santa Clara, CA, USA).
| | Sample_hyb_protocol | Following fragmentation, 12.5 µg cRNA were hybridized for 16 hr at 45°C on Affymetrix GeneChip Rat Genome 230 2.0 Array. GeneChips were washed and stained in the Affymetrix GeneChip Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | CEL files were quantified with the Factor Analysis for Robust Microarray Summarization (FARMS) method, using the statistical language R and Bioconductor.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Yuji,,Nakai
| | Sample_contact_institute | The University of Tokyo
| | Sample_contact_address | 1-1-1, Yayoi
| | Sample_contact_city | Bunkyo-ku
| | Sample_contact_state | Tokyo
| | Sample_contact_zip/postal_code | 113-8657
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1023nnn/GSM1023375/suppl/GSM1023375_LB_1.CEL.gz
| | Sample_series_id | GSE41734
| | Sample_data_row_count | 31099
| | |
|
GSM1023376 | GPL1355 |
|
Liver, Lactobacillus brevis119-2 containing diet administrated for 2 weeks, biological rep2
|
Liver, fed Lactobacillus brevis119-2 containing diet for 2 weeks
|
gender: Male
strain: Sprague-Dawley
tissue: Liver
age: 7 weeks
|
No additional information
|
| Sample_geo_accession | GSM1023376
| | Sample_status | Public on Apr 24 2013
| | Sample_submission_date | Oct 22 2012
| | Sample_last_update_date | Apr 24 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolatedusing Trizol reagent (Invitrogen Life Technologies Corp.), then purified with an RNeasy mini kit (Qiagen K.K., Tokyo, Japan).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | biotinylated aRNA was obtained from 100 ng of purified total RNA using a GeneChip 3’ IVT Express Kit (Affymetrix, Santa Clara, CA, USA).
| | Sample_hyb_protocol | Following fragmentation, 12.5 µg cRNA were hybridized for 16 hr at 45°C on Affymetrix GeneChip Rat Genome 230 2.0 Array. GeneChips were washed and stained in the Affymetrix GeneChip Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | CEL files were quantified with the Factor Analysis for Robust Microarray Summarization (FARMS) method, using the statistical language R and Bioconductor.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Yuji,,Nakai
| | Sample_contact_institute | The University of Tokyo
| | Sample_contact_address | 1-1-1, Yayoi
| | Sample_contact_city | Bunkyo-ku
| | Sample_contact_state | Tokyo
| | Sample_contact_zip/postal_code | 113-8657
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1023nnn/GSM1023376/suppl/GSM1023376_LB_2.CEL.gz
| | Sample_series_id | GSE41734
| | Sample_data_row_count | 31099
| | |
|
GSM1023377 | GPL1355 |
|
Liver, Lactobacillus brevis119-2 containing diet administrated for 2 weeks, biological rep3
|
Liver, fed Lactobacillus brevis119-2 containing diet for 2 weeks
|
gender: Male
strain: Sprague-Dawley
tissue: Liver
age: 7 weeks
|
No additional information
|
| Sample_geo_accession | GSM1023377
| | Sample_status | Public on Apr 24 2013
| | Sample_submission_date | Oct 22 2012
| | Sample_last_update_date | Apr 24 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolatedusing Trizol reagent (Invitrogen Life Technologies Corp.), then purified with an RNeasy mini kit (Qiagen K.K., Tokyo, Japan).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | biotinylated aRNA was obtained from 100 ng of purified total RNA using a GeneChip 3’ IVT Express Kit (Affymetrix, Santa Clara, CA, USA).
| | Sample_hyb_protocol | Following fragmentation, 12.5 µg cRNA were hybridized for 16 hr at 45°C on Affymetrix GeneChip Rat Genome 230 2.0 Array. GeneChips were washed and stained in the Affymetrix GeneChip Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | CEL files were quantified with the Factor Analysis for Robust Microarray Summarization (FARMS) method, using the statistical language R and Bioconductor.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Yuji,,Nakai
| | Sample_contact_institute | The University of Tokyo
| | Sample_contact_address | 1-1-1, Yayoi
| | Sample_contact_city | Bunkyo-ku
| | Sample_contact_state | Tokyo
| | Sample_contact_zip/postal_code | 113-8657
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1023nnn/GSM1023377/suppl/GSM1023377_LB_3.CEL.gz
| | Sample_series_id | GSE41734
| | Sample_data_row_count | 31099
| | |
|
GSM1023378 | GPL1355 |
|
Liver, Lactobacillus brevis119-2 containing diet administrated for 2 weeks, biological rep4
|
Liver, fed Lactobacillus brevis119-2 containing diet for 2 weeks
|
gender: Male
strain: Sprague-Dawley
tissue: Liver
age: 7 weeks
|
No additional information
|
| Sample_geo_accession | GSM1023378
| | Sample_status | Public on Apr 24 2013
| | Sample_submission_date | Oct 22 2012
| | Sample_last_update_date | Apr 24 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolatedusing Trizol reagent (Invitrogen Life Technologies Corp.), then purified with an RNeasy mini kit (Qiagen K.K., Tokyo, Japan).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | biotinylated aRNA was obtained from 100 ng of purified total RNA using a GeneChip 3’ IVT Express Kit (Affymetrix, Santa Clara, CA, USA).
| | Sample_hyb_protocol | Following fragmentation, 12.5 µg cRNA were hybridized for 16 hr at 45°C on Affymetrix GeneChip Rat Genome 230 2.0 Array. GeneChips were washed and stained in the Affymetrix GeneChip Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | CEL files were quantified with the Factor Analysis for Robust Microarray Summarization (FARMS) method, using the statistical language R and Bioconductor.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Yuji,,Nakai
| | Sample_contact_institute | The University of Tokyo
| | Sample_contact_address | 1-1-1, Yayoi
| | Sample_contact_city | Bunkyo-ku
| | Sample_contact_state | Tokyo
| | Sample_contact_zip/postal_code | 113-8657
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1023nnn/GSM1023378/suppl/GSM1023378_LB_4.CEL.gz
| | Sample_series_id | GSE41734
| | Sample_data_row_count | 31099
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