Search results for the GEO ID: GSE41802  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM1024502 | GPL570 |
|
HCT116 Parental Cells, biological replicate 1
|
HCT116 Parental clone, cells grown for 6 days
|
cell line: HCT116
clone: parental
idh mutational status at the mrna level: wild-type
|
|
| Sample_geo_accession | GSM1024502
| | Sample_status | Public on Oct 25 2012
| | Sample_submission_date | Oct 23 2012
| | Sample_last_update_date | Oct 25 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | none
| | Sample_growth_protocol_ch1 | Cells grown for 6 days in 5% CO2 at 37ºC
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen Rneasy Kit, manufacturer's protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Nugen Ovation RNA Amplification System+ WB + FL cDNA Biotin Module V2 (NuGen Lts)
| | Sample_hyb_protocol | Affymetrix GeneChip eukaryotic hybridization protocol (Affymetrix Inc.)
| | Sample_scan_protocol | GeneChip Scanner 3000 (Affymetrix Inc.)
| | Sample_data_processing | Micorarray Analysis Suite version 5.0 (MAS 5.0) background correction, scaled to 150
| | Sample_platform_id | GPL570
| | Sample_contact_name | Joshua,M,Korn
| | Sample_contact_email | joshkorn@gmail.com
| | Sample_contact_institute | Novartis
| | Sample_contact_address | 250 Mass Ave
| | Sample_contact_city | Cambridge
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02141
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1024nnn/GSM1024502/suppl/GSM1024502_NUID-0000-0144-9356.CEL.gz
| | Sample_series_id | GSE41802
| | Sample_data_row_count | 54675
| | |
|
GSM1024503 | GPL570 |
|
HCT116 Parental Cells, biological replicate 2
|
HCT116 Parental clone, cells grown for 6 days
|
cell line: HCT116
clone: parental
idh mutational status at the mrna level: wild-type
|
|
| Sample_geo_accession | GSM1024503
| | Sample_status | Public on Oct 25 2012
| | Sample_submission_date | Oct 23 2012
| | Sample_last_update_date | Oct 25 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | none
| | Sample_growth_protocol_ch1 | Cells grown for 6 days in 5% CO2 at 37ºC
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen Rneasy Kit, manufacturer's protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Nugen Ovation RNA Amplification System+ WB + FL cDNA Biotin Module V2 (NuGen Lts)
| | Sample_hyb_protocol | Affymetrix GeneChip eukaryotic hybridization protocol (Affymetrix Inc.)
| | Sample_scan_protocol | GeneChip Scanner 3000 (Affymetrix Inc.)
| | Sample_data_processing | Micorarray Analysis Suite version 5.0 (MAS 5.0) background correction, scaled to 150
| | Sample_platform_id | GPL570
| | Sample_contact_name | Joshua,M,Korn
| | Sample_contact_email | joshkorn@gmail.com
| | Sample_contact_institute | Novartis
| | Sample_contact_address | 250 Mass Ave
| | Sample_contact_city | Cambridge
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02141
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1024nnn/GSM1024503/suppl/GSM1024503_NUID-0000-0144-9357.CEL.gz
| | Sample_series_id | GSE41802
| | Sample_data_row_count | 54675
| | |
|
GSM1024504 | GPL570 |
|
HCT116 IDH1 R132H/+ (2C11 clone) Cells, biological replicate 1
|
HCT116 IDH1 R132H/+ clone 2C11, cells grown for 6 days
|
cell line: HCT116
clone: 2C11
idh mutational status at the mrna level: IDH1 R132H/+
|
|
| Sample_geo_accession | GSM1024504
| | Sample_status | Public on Oct 25 2012
| | Sample_submission_date | Oct 23 2012
| | Sample_last_update_date | Oct 25 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | none
| | Sample_growth_protocol_ch1 | Cells grown for 6 days in 5% CO2 at 37ºC
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen Rneasy Kit, manufacturer's protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Nugen Ovation RNA Amplification System+ WB + FL cDNA Biotin Module V2 (NuGen Lts)
| | Sample_hyb_protocol | Affymetrix GeneChip eukaryotic hybridization protocol (Affymetrix Inc.)
| | Sample_scan_protocol | GeneChip Scanner 3000 (Affymetrix Inc.)
| | Sample_data_processing | Micorarray Analysis Suite version 5.0 (MAS 5.0) background correction, scaled to 150
| | Sample_platform_id | GPL570
| | Sample_contact_name | Joshua,M,Korn
| | Sample_contact_email | joshkorn@gmail.com
| | Sample_contact_institute | Novartis
| | Sample_contact_address | 250 Mass Ave
| | Sample_contact_city | Cambridge
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02141
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1024nnn/GSM1024504/suppl/GSM1024504_NUID-0000-0144-9358.CEL.gz
| | Sample_series_id | GSE41802
| | Sample_data_row_count | 54675
| | |
|
GSM1024505 | GPL570 |
|
HCT116 IDH1 R132H/+ (2C11 clone) Cells, biological replicate 2
|
HCT116 IDH1 R132H/+ clone 2C11, cells grown for 6 days
|
cell line: HCT116
clone: 2C11
idh mutational status at the mrna level: IDH1 R132H/+
|
|
| Sample_geo_accession | GSM1024505
| | Sample_status | Public on Oct 25 2012
| | Sample_submission_date | Oct 23 2012
| | Sample_last_update_date | Oct 25 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | none
| | Sample_growth_protocol_ch1 | Cells grown for 6 days in 5% CO2 at 37ºC
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen Rneasy Kit, manufacturer's protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Nugen Ovation RNA Amplification System+ WB + FL cDNA Biotin Module V2 (NuGen Lts)
| | Sample_hyb_protocol | Affymetrix GeneChip eukaryotic hybridization protocol (Affymetrix Inc.)
| | Sample_scan_protocol | GeneChip Scanner 3000 (Affymetrix Inc.)
| | Sample_data_processing | Micorarray Analysis Suite version 5.0 (MAS 5.0) background correction, scaled to 150
| | Sample_platform_id | GPL570
| | Sample_contact_name | Joshua,M,Korn
| | Sample_contact_email | joshkorn@gmail.com
| | Sample_contact_institute | Novartis
| | Sample_contact_address | 250 Mass Ave
| | Sample_contact_city | Cambridge
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02141
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1024nnn/GSM1024505/suppl/GSM1024505_NUID-0000-0144-9359.CEL.gz
| | Sample_series_id | GSE41802
| | Sample_data_row_count | 54675
| | |
|
GSM1024506 | GPL570 |
|
HCT116 IDH1 R132H/+ (2H1 clone) Cells, biological replicate 1
|
HCT116 IDH1 R132H/+ clone 2H1, cells grown for 6 days
|
cell line: HCT116
clone: 2H1
idh mutational status at the mrna level: IDH1 R132H/+
|
|
| Sample_geo_accession | GSM1024506
| | Sample_status | Public on Oct 25 2012
| | Sample_submission_date | Oct 23 2012
| | Sample_last_update_date | Oct 25 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | none
| | Sample_growth_protocol_ch1 | Cells grown for 6 days in 5% CO2 at 37ºC
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen Rneasy Kit, manufacturer's protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Nugen Ovation RNA Amplification System+ WB + FL cDNA Biotin Module V2 (NuGen Lts)
| | Sample_hyb_protocol | Affymetrix GeneChip eukaryotic hybridization protocol (Affymetrix Inc.)
| | Sample_scan_protocol | GeneChip Scanner 3000 (Affymetrix Inc.)
| | Sample_data_processing | Micorarray Analysis Suite version 5.0 (MAS 5.0) background correction, scaled to 150
| | Sample_platform_id | GPL570
| | Sample_contact_name | Joshua,M,Korn
| | Sample_contact_email | joshkorn@gmail.com
| | Sample_contact_institute | Novartis
| | Sample_contact_address | 250 Mass Ave
| | Sample_contact_city | Cambridge
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02141
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1024nnn/GSM1024506/suppl/GSM1024506_NUID-0000-0144-9360.CEL.gz
| | Sample_series_id | GSE41802
| | Sample_data_row_count | 54675
| | |
|
GSM1024507 | GPL570 |
|
HCT116 IDH1 R132H/+ (2H1 clone) Cells, biological replicate 2
|
HCT116 IDH1 R132H/+ clone 2H1, cells grown for 6 days
|
cell line: HCT116
clone: 2H1
idh mutational status at the mrna level: IDH1 R132H/+
|
|
| Sample_geo_accession | GSM1024507
| | Sample_status | Public on Oct 25 2012
| | Sample_submission_date | Oct 23 2012
| | Sample_last_update_date | Oct 25 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | none
| | Sample_growth_protocol_ch1 | Cells grown for 6 days in 5% CO2 at 37ºC
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen Rneasy Kit, manufacturer's protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Nugen Ovation RNA Amplification System+ WB + FL cDNA Biotin Module V2 (NuGen Lts)
| | Sample_hyb_protocol | Affymetrix GeneChip eukaryotic hybridization protocol (Affymetrix Inc.)
| | Sample_scan_protocol | GeneChip Scanner 3000 (Affymetrix Inc.)
| | Sample_data_processing | Micorarray Analysis Suite version 5.0 (MAS 5.0) background correction, scaled to 150
| | Sample_platform_id | GPL570
| | Sample_contact_name | Joshua,M,Korn
| | Sample_contact_email | joshkorn@gmail.com
| | Sample_contact_institute | Novartis
| | Sample_contact_address | 250 Mass Ave
| | Sample_contact_city | Cambridge
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02141
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1024nnn/GSM1024507/suppl/GSM1024507_NUID-0000-0144-9361.CEL.gz
| | Sample_series_id | GSE41802
| | Sample_data_row_count | 54675
| | |
|
GSM1024508 | GPL570 |
|
HCT116 IDH1 R132C/+ (3A4 clone) Cells, biological replicate 1
|
HCT116 IDH1 R132C/+ clone 3A4, cells grown for 6 days
|
cell line: HCT116
clone: 3A4
idh mutational status at the mrna level: IDH1 R132C/+
|
|
| Sample_geo_accession | GSM1024508
| | Sample_status | Public on Oct 25 2012
| | Sample_submission_date | Oct 23 2012
| | Sample_last_update_date | Oct 25 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | none
| | Sample_growth_protocol_ch1 | Cells grown for 6 days in 5% CO2 at 37ºC
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen Rneasy Kit, manufacturer's protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Nugen Ovation RNA Amplification System+ WB + FL cDNA Biotin Module V2 (NuGen Lts)
| | Sample_hyb_protocol | Affymetrix GeneChip eukaryotic hybridization protocol (Affymetrix Inc.)
| | Sample_scan_protocol | GeneChip Scanner 3000 (Affymetrix Inc.)
| | Sample_data_processing | Micorarray Analysis Suite version 5.0 (MAS 5.0) background correction, scaled to 150
| | Sample_platform_id | GPL570
| | Sample_contact_name | Joshua,M,Korn
| | Sample_contact_email | joshkorn@gmail.com
| | Sample_contact_institute | Novartis
| | Sample_contact_address | 250 Mass Ave
| | Sample_contact_city | Cambridge
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02141
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1024nnn/GSM1024508/suppl/GSM1024508_NUID-0000-0144-9362.CEL.gz
| | Sample_series_id | GSE41802
| | Sample_data_row_count | 54675
| | |
|
GSM1024509 | GPL570 |
|
HCT116 IDH1 R132C/+ (3A4 clone) Cells, biological replicate 2
|
HCT116 IDH1 R132C/+ clone 3A4, cells grown for 6 days
|
cell line: HCT116
clone: 3A4
idh mutational status at the mrna level: IDH1 R132C/+
|
|
| Sample_geo_accession | GSM1024509
| | Sample_status | Public on Oct 25 2012
| | Sample_submission_date | Oct 23 2012
| | Sample_last_update_date | Oct 25 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | none
| | Sample_growth_protocol_ch1 | Cells grown for 6 days in 5% CO2 at 37ºC
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen Rneasy Kit, manufacturer's protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Nugen Ovation RNA Amplification System+ WB + FL cDNA Biotin Module V2 (NuGen Lts)
| | Sample_hyb_protocol | Affymetrix GeneChip eukaryotic hybridization protocol (Affymetrix Inc.)
| | Sample_scan_protocol | GeneChip Scanner 3000 (Affymetrix Inc.)
| | Sample_data_processing | Micorarray Analysis Suite version 5.0 (MAS 5.0) background correction, scaled to 150
| | Sample_platform_id | GPL570
| | Sample_contact_name | Joshua,M,Korn
| | Sample_contact_email | joshkorn@gmail.com
| | Sample_contact_institute | Novartis
| | Sample_contact_address | 250 Mass Ave
| | Sample_contact_city | Cambridge
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02141
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1024nnn/GSM1024509/suppl/GSM1024509_NUID-0000-0144-9363.CEL.gz
| | Sample_series_id | GSE41802
| | Sample_data_row_count | 54675
| | |
|
GSM1024510 | GPL570 |
|
HCT116 IDH1 R132C/+ (16F8 clone, non-expressing of mutant allele) Cells, biological replicate 1
|
HCT116 IDH1 R132C/+ non-expressing clone 16F8 (note that this clone does not express the mutant IDH1 at the mRNA level) cells grown for 6 days
|
cell line: HCT116
clone: 16F8
idh mutational status at the mrna level: wild-type
|
|
| Sample_geo_accession | GSM1024510
| | Sample_status | Public on Oct 25 2012
| | Sample_submission_date | Oct 23 2012
| | Sample_last_update_date | Oct 25 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | none
| | Sample_growth_protocol_ch1 | Cells grown for 6 days in 5% CO2 at 37ºC
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen Rneasy Kit, manufacturer's protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Nugen Ovation RNA Amplification System+ WB + FL cDNA Biotin Module V2 (NuGen Lts)
| | Sample_hyb_protocol | Affymetrix GeneChip eukaryotic hybridization protocol (Affymetrix Inc.)
| | Sample_scan_protocol | GeneChip Scanner 3000 (Affymetrix Inc.)
| | Sample_data_processing | Micorarray Analysis Suite version 5.0 (MAS 5.0) background correction, scaled to 150
| | Sample_platform_id | GPL570
| | Sample_contact_name | Joshua,M,Korn
| | Sample_contact_email | joshkorn@gmail.com
| | Sample_contact_institute | Novartis
| | Sample_contact_address | 250 Mass Ave
| | Sample_contact_city | Cambridge
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02141
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1024nnn/GSM1024510/suppl/GSM1024510_NUID-0000-0144-9364.CEL.gz
| | Sample_series_id | GSE41802
| | Sample_data_row_count | 54675
| | |
|
GSM1024511 | GPL570 |
|
HCT116 IDH1 R132C/+ (16F8 clone, non-expressing of mutant allele) Cells, biological replicate 2
|
HCT116 IDH1 R132C/+ non-expressing clone 16F8 (note that this clone does not express the mutant IDH1 at the mRNA level) cells grown for 6 days
|
cell line: HCT116
clone: 16F8
idh mutational status at the mrna level: wild-type
|
|
| Sample_geo_accession | GSM1024511
| | Sample_status | Public on Oct 25 2012
| | Sample_submission_date | Oct 23 2012
| | Sample_last_update_date | Oct 25 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | none
| | Sample_growth_protocol_ch1 | Cells grown for 6 days in 5% CO2 at 37ºC
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen Rneasy Kit, manufacturer's protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Nugen Ovation RNA Amplification System+ WB + FL cDNA Biotin Module V2 (NuGen Lts)
| | Sample_hyb_protocol | Affymetrix GeneChip eukaryotic hybridization protocol (Affymetrix Inc.)
| | Sample_scan_protocol | GeneChip Scanner 3000 (Affymetrix Inc.)
| | Sample_data_processing | Micorarray Analysis Suite version 5.0 (MAS 5.0) background correction, scaled to 150
| | Sample_platform_id | GPL570
| | Sample_contact_name | Joshua,M,Korn
| | Sample_contact_email | joshkorn@gmail.com
| | Sample_contact_institute | Novartis
| | Sample_contact_address | 250 Mass Ave
| | Sample_contact_city | Cambridge
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02141
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1024nnn/GSM1024511/suppl/GSM1024511_NUID-0000-0144-9365.CEL.gz
| | Sample_series_id | GSE41802
| | Sample_data_row_count | 54675
| | |
|
GSM1024512 | GPL570 |
|
HCT116 IDH2 R140Q/+ (8G12 clone) Cells, biological replicate 1
|
HCT116 IDH2 R140Q/+ clone 8G12, cells grown for 6 days
|
cell line: HCT116
clone: 8G12
idh mutational status at the mrna level: IDH2 R140Q/+
|
|
| Sample_geo_accession | GSM1024512
| | Sample_status | Public on Oct 25 2012
| | Sample_submission_date | Oct 23 2012
| | Sample_last_update_date | Oct 25 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | none
| | Sample_growth_protocol_ch1 | Cells grown for 6 days in 5% CO2 at 37ºC
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen Rneasy Kit, manufacturer's protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Nugen Ovation RNA Amplification System+ WB + FL cDNA Biotin Module V2 (NuGen Lts)
| | Sample_hyb_protocol | Affymetrix GeneChip eukaryotic hybridization protocol (Affymetrix Inc.)
| | Sample_scan_protocol | GeneChip Scanner 3000 (Affymetrix Inc.)
| | Sample_data_processing | Micorarray Analysis Suite version 5.0 (MAS 5.0) background correction, scaled to 150
| | Sample_platform_id | GPL570
| | Sample_contact_name | Joshua,M,Korn
| | Sample_contact_email | joshkorn@gmail.com
| | Sample_contact_institute | Novartis
| | Sample_contact_address | 250 Mass Ave
| | Sample_contact_city | Cambridge
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02141
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1024nnn/GSM1024512/suppl/GSM1024512_NUID-0000-0144-9366.CEL.gz
| | Sample_series_id | GSE41802
| | Sample_data_row_count | 54675
| | |
|
GSM1024513 | GPL570 |
|
HCT116 IDH2 R140Q/+ (8G12 clone) Cells, biological replicate 2
|
HCT116 IDH2 R140Q/+ clone 8G12, cells grown for 6 days
|
cell line: HCT116
clone: 8G12
idh mutational status at the mrna level: IDH2 R140Q/+
|
|
| Sample_geo_accession | GSM1024513
| | Sample_status | Public on Oct 25 2012
| | Sample_submission_date | Oct 23 2012
| | Sample_last_update_date | Oct 25 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | none
| | Sample_growth_protocol_ch1 | Cells grown for 6 days in 5% CO2 at 37ºC
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen Rneasy Kit, manufacturer's protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Nugen Ovation RNA Amplification System+ WB + FL cDNA Biotin Module V2 (NuGen Lts)
| | Sample_hyb_protocol | Affymetrix GeneChip eukaryotic hybridization protocol (Affymetrix Inc.)
| | Sample_scan_protocol | GeneChip Scanner 3000 (Affymetrix Inc.)
| | Sample_data_processing | Micorarray Analysis Suite version 5.0 (MAS 5.0) background correction, scaled to 150
| | Sample_platform_id | GPL570
| | Sample_contact_name | Joshua,M,Korn
| | Sample_contact_email | joshkorn@gmail.com
| | Sample_contact_institute | Novartis
| | Sample_contact_address | 250 Mass Ave
| | Sample_contact_city | Cambridge
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02141
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1024nnn/GSM1024513/suppl/GSM1024513_NUID-0000-0144-9367.CEL.gz
| | Sample_series_id | GSE41802
| | Sample_data_row_count | 54675
| | |
|
GSM1024514 | GPL570 |
|
HCT116 IDH2 R140Q/+ (17H5 clone) Cells, biological replicate 1
|
HCT116 IDH2 R140Q/+ clone 17H5, cells grown for 6 days
|
cell line: HCT116
clone: 17H5
idh mutational status at the mrna level: IDH2 R140Q/+
|
|
| Sample_geo_accession | GSM1024514
| | Sample_status | Public on Oct 25 2012
| | Sample_submission_date | Oct 23 2012
| | Sample_last_update_date | Oct 25 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | none
| | Sample_growth_protocol_ch1 | Cells grown for 6 days in 5% CO2 at 37ºC
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen Rneasy Kit, manufacturer's protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Nugen Ovation RNA Amplification System+ WB + FL cDNA Biotin Module V2 (NuGen Lts)
| | Sample_hyb_protocol | Affymetrix GeneChip eukaryotic hybridization protocol (Affymetrix Inc.)
| | Sample_scan_protocol | GeneChip Scanner 3000 (Affymetrix Inc.)
| | Sample_data_processing | Micorarray Analysis Suite version 5.0 (MAS 5.0) background correction, scaled to 150
| | Sample_platform_id | GPL570
| | Sample_contact_name | Joshua,M,Korn
| | Sample_contact_email | joshkorn@gmail.com
| | Sample_contact_institute | Novartis
| | Sample_contact_address | 250 Mass Ave
| | Sample_contact_city | Cambridge
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02141
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1024nnn/GSM1024514/suppl/GSM1024514_NUID-0000-0144-9368.CEL.gz
| | Sample_series_id | GSE41802
| | Sample_data_row_count | 54675
| | |
|
GSM1024515 | GPL570 |
|
HCT116 IDH2 R140Q/+ (17H5 clone) Cells, biological replicate 2
|
HCT116 IDH2 R140Q/+ clone 17H5, cells grown for 6 days
|
cell line: HCT116
clone: 17H5
idh mutational status at the mrna level: IDH2 R140Q/+
|
|
| Sample_geo_accession | GSM1024515
| | Sample_status | Public on Oct 25 2012
| | Sample_submission_date | Oct 23 2012
| | Sample_last_update_date | Oct 25 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | none
| | Sample_growth_protocol_ch1 | Cells grown for 6 days in 5% CO2 at 37ºC
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen Rneasy Kit, manufacturer's protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Nugen Ovation RNA Amplification System+ WB + FL cDNA Biotin Module V2 (NuGen Lts)
| | Sample_hyb_protocol | Affymetrix GeneChip eukaryotic hybridization protocol (Affymetrix Inc.)
| | Sample_scan_protocol | GeneChip Scanner 3000 (Affymetrix Inc.)
| | Sample_data_processing | Micorarray Analysis Suite version 5.0 (MAS 5.0) background correction, scaled to 150
| | Sample_platform_id | GPL570
| | Sample_contact_name | Joshua,M,Korn
| | Sample_contact_email | joshkorn@gmail.com
| | Sample_contact_institute | Novartis
| | Sample_contact_address | 250 Mass Ave
| | Sample_contact_city | Cambridge
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02141
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1024nnn/GSM1024515/suppl/GSM1024515_NUID-0000-0144-9369.CEL.gz
| | Sample_series_id | GSE41802
| | Sample_data_row_count | 54675
| | |
|
GSM1024516 | GPL570 |
|
HCT116 IDH2 R172K/+ (47C2 clone) Cells, biological replicate 1
|
HCT116 IDH2 R172K/+ clone 47C2, cells grown for 6 days
|
cell line: HCT116
clone: 47C2
idh mutational status at the mrna level: IDH2 R172K/+
|
|
| Sample_geo_accession | GSM1024516
| | Sample_status | Public on Oct 25 2012
| | Sample_submission_date | Oct 23 2012
| | Sample_last_update_date | Oct 25 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | none
| | Sample_growth_protocol_ch1 | Cells grown for 6 days in 5% CO2 at 37ºC
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen Rneasy Kit, manufacturer's protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Nugen Ovation RNA Amplification System+ WB + FL cDNA Biotin Module V2 (NuGen Lts)
| | Sample_hyb_protocol | Affymetrix GeneChip eukaryotic hybridization protocol (Affymetrix Inc.)
| | Sample_scan_protocol | GeneChip Scanner 3000 (Affymetrix Inc.)
| | Sample_data_processing | Micorarray Analysis Suite version 5.0 (MAS 5.0) background correction, scaled to 150
| | Sample_platform_id | GPL570
| | Sample_contact_name | Joshua,M,Korn
| | Sample_contact_email | joshkorn@gmail.com
| | Sample_contact_institute | Novartis
| | Sample_contact_address | 250 Mass Ave
| | Sample_contact_city | Cambridge
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02141
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1024nnn/GSM1024516/suppl/GSM1024516_NUID-0000-0144-9370.CEL.gz
| | Sample_series_id | GSE41802
| | Sample_data_row_count | 54675
| | |
|
GSM1024517 | GPL570 |
|
HCT116 IDH2 R172K/+ (47C2 clone) Cells, biological replicate 2
|
HCT116 IDH2 R172K/+ clone 47C2, cells grown for 6 days
|
cell line: HCT116
clone: 47C2
idh mutational status at the mrna level: IDH2 R172K/+
|
|
| Sample_geo_accession | GSM1024517
| | Sample_status | Public on Oct 25 2012
| | Sample_submission_date | Oct 23 2012
| | Sample_last_update_date | Oct 25 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | none
| | Sample_growth_protocol_ch1 | Cells grown for 6 days in 5% CO2 at 37ºC
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen Rneasy Kit, manufacturer's protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Nugen Ovation RNA Amplification System+ WB + FL cDNA Biotin Module V2 (NuGen Lts)
| | Sample_hyb_protocol | Affymetrix GeneChip eukaryotic hybridization protocol (Affymetrix Inc.)
| | Sample_scan_protocol | GeneChip Scanner 3000 (Affymetrix Inc.)
| | Sample_data_processing | Micorarray Analysis Suite version 5.0 (MAS 5.0) background correction, scaled to 150
| | Sample_platform_id | GPL570
| | Sample_contact_name | Joshua,M,Korn
| | Sample_contact_email | joshkorn@gmail.com
| | Sample_contact_institute | Novartis
| | Sample_contact_address | 250 Mass Ave
| | Sample_contact_city | Cambridge
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02141
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1024nnn/GSM1024517/suppl/GSM1024517_NUID-0000-0144-9371.CEL.gz
| | Sample_series_id | GSE41802
| | Sample_data_row_count | 54675
| | |
|
GSM1024518 | GPL570 |
|
HCT116 IDH2 R172K/+ (45G3 clone) Cells, biological replicate 1
|
HCT116 IDH2 R172K/+ clone 45G3, cells grown for 6 days
|
cell line: HCT116
clone: 45G3
idh mutational status at the mrna level: IDH2 R172K/+
|
|
| Sample_geo_accession | GSM1024518
| | Sample_status | Public on Oct 25 2012
| | Sample_submission_date | Oct 23 2012
| | Sample_last_update_date | Oct 25 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | none
| | Sample_growth_protocol_ch1 | Cells grown for 6 days in 5% CO2 at 37ºC
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen Rneasy Kit, manufacturer's protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Nugen Ovation RNA Amplification System+ WB + FL cDNA Biotin Module V2 (NuGen Lts)
| | Sample_hyb_protocol | Affymetrix GeneChip eukaryotic hybridization protocol (Affymetrix Inc.)
| | Sample_scan_protocol | GeneChip Scanner 3000 (Affymetrix Inc.)
| | Sample_data_processing | Micorarray Analysis Suite version 5.0 (MAS 5.0) background correction, scaled to 150
| | Sample_platform_id | GPL570
| | Sample_contact_name | Joshua,M,Korn
| | Sample_contact_email | joshkorn@gmail.com
| | Sample_contact_institute | Novartis
| | Sample_contact_address | 250 Mass Ave
| | Sample_contact_city | Cambridge
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02141
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1024nnn/GSM1024518/suppl/GSM1024518_NUID-0000-0144-9372.CEL.gz
| | Sample_series_id | GSE41802
| | Sample_data_row_count | 54675
| | |
|
GSM1024519 | GPL570 |
|
HCT116 IDH2 R172K/+ (45G3 clone) Cells, biological replicate 2
|
HCT116 IDH2 R172K/+ clone 45G3, cells grown for 6 days
|
cell line: HCT116
clone: 45G3
idh mutational status at the mrna level: IDH2 R172K/+
|
|
| Sample_geo_accession | GSM1024519
| | Sample_status | Public on Oct 25 2012
| | Sample_submission_date | Oct 23 2012
| | Sample_last_update_date | Oct 25 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | none
| | Sample_growth_protocol_ch1 | Cells grown for 6 days in 5% CO2 at 37ºC
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen Rneasy Kit, manufacturer's protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Nugen Ovation RNA Amplification System+ WB + FL cDNA Biotin Module V2 (NuGen Lts)
| | Sample_hyb_protocol | Affymetrix GeneChip eukaryotic hybridization protocol (Affymetrix Inc.)
| | Sample_scan_protocol | GeneChip Scanner 3000 (Affymetrix Inc.)
| | Sample_data_processing | Micorarray Analysis Suite version 5.0 (MAS 5.0) background correction, scaled to 150
| | Sample_platform_id | GPL570
| | Sample_contact_name | Joshua,M,Korn
| | Sample_contact_email | joshkorn@gmail.com
| | Sample_contact_institute | Novartis
| | Sample_contact_address | 250 Mass Ave
| | Sample_contact_city | Cambridge
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02141
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1024nnn/GSM1024519/suppl/GSM1024519_NUID-0000-0144-9373.CEL.gz
| | Sample_series_id | GSE41802
| | Sample_data_row_count | 54675
| | |
|
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Make groups for comparisons |
(2 groups will be compared at a time) |
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| Select GSMs and click on "Add groups" |
Enter the group name here: |
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