Search results for the GEO ID: GSE41821  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM1024803 | GPL339 |
|
wt_P2_rep1
|
wild type mouse retina at age postnatal day 2
|
tissue: retina
age: postnatal day 2
genotype: wild type
|
|
| Sample_geo_accession | GSM1024803
| | Sample_status | Public on Nov 02 2012
| | Sample_submission_date | Oct 24 2012
| | Sample_last_update_date | Nov 02 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | Animals were grown to postnatal day 2, 4, 6 or 8 where eyes were enucleaded and retinas isolated. 8-14 retinas were combined per sample.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated from retinas using TRIzol reagent according to manufacture's protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip MOE430A arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetric GeneArray 2500 scanner.
| | Sample_data_processing | Expression scores were obtained using Robust Multichip Average to do background correction, quantile normalization and summarization. Normalized data was subjected to a two-stage analysis based on FDR-CI.
| | Sample_platform_id | GPL339
| | Sample_contact_name | Matthew ,J,Brooks
| | Sample_contact_email | brooksma@mail.nih.gov
| | Sample_contact_phone | 301-605-4063
| | Sample_contact_laboratory | NNRL
| | Sample_contact_department | NEI
| | Sample_contact_institute | NIH
| | Sample_contact_address | 6 Center Dr Bldg 6, Rm 336
| | Sample_contact_city | Bethesda
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20892
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1024nnn/GSM1024803/suppl/GSM1024803_CP2-29.CEL.gz
| | Sample_series_id | GSE41821
| | Sample_data_row_count | 22690
| | |
|
GSM1024804 | GPL339 |
|
wt_P2_rep2
|
wild type mouse retina at age postnatal day 2
|
tissue: retina
age: postnatal day 2
genotype: wild type
|
|
| Sample_geo_accession | GSM1024804
| | Sample_status | Public on Nov 02 2012
| | Sample_submission_date | Oct 24 2012
| | Sample_last_update_date | Nov 02 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | Animals were grown to postnatal day 2, 4, 6 or 8 where eyes were enucleaded and retinas isolated. 8-14 retinas were combined per sample.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated from retinas using TRIzol reagent according to manufacture's protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip MOE430A arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetric GeneArray 2500 scanner.
| | Sample_data_processing | Expression scores were obtained using Robust Multichip Average to do background correction, quantile normalization and summarization. Normalized data was subjected to a two-stage analysis based on FDR-CI.
| | Sample_platform_id | GPL339
| | Sample_contact_name | Matthew ,J,Brooks
| | Sample_contact_email | brooksma@mail.nih.gov
| | Sample_contact_phone | 301-605-4063
| | Sample_contact_laboratory | NNRL
| | Sample_contact_department | NEI
| | Sample_contact_institute | NIH
| | Sample_contact_address | 6 Center Dr Bldg 6, Rm 336
| | Sample_contact_city | Bethesda
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20892
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1024nnn/GSM1024804/suppl/GSM1024804_CP2-30.CEL.gz
| | Sample_series_id | GSE41821
| | Sample_data_row_count | 22690
| | |
|
GSM1024805 | GPL339 |
|
wt_P2_rep3
|
wild type mouse retina at age postnatal day 2
|
tissue: retina
age: postnatal day 2
genotype: wild type
|
|
| Sample_geo_accession | GSM1024805
| | Sample_status | Public on Nov 02 2012
| | Sample_submission_date | Oct 24 2012
| | Sample_last_update_date | Nov 02 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | Animals were grown to postnatal day 2, 4, 6 or 8 where eyes were enucleaded and retinas isolated. 8-14 retinas were combined per sample.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated from retinas using TRIzol reagent according to manufacture's protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip MOE430A arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetric GeneArray 2500 scanner.
| | Sample_data_processing | Expression scores were obtained using Robust Multichip Average to do background correction, quantile normalization and summarization. Normalized data was subjected to a two-stage analysis based on FDR-CI.
| | Sample_platform_id | GPL339
| | Sample_contact_name | Matthew ,J,Brooks
| | Sample_contact_email | brooksma@mail.nih.gov
| | Sample_contact_phone | 301-605-4063
| | Sample_contact_laboratory | NNRL
| | Sample_contact_department | NEI
| | Sample_contact_institute | NIH
| | Sample_contact_address | 6 Center Dr Bldg 6, Rm 336
| | Sample_contact_city | Bethesda
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20892
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1024nnn/GSM1024805/suppl/GSM1024805_CP2-31.CEL.gz
| | Sample_series_id | GSE41821
| | Sample_data_row_count | 22690
| | |
|
GSM1024806 | GPL339 |
|
wt_P2_rep4
|
wild type mouse retina at age postnatal day 2
|
tissue: retina
age: postnatal day 2
genotype: wild type
|
|
| Sample_geo_accession | GSM1024806
| | Sample_status | Public on Nov 02 2012
| | Sample_submission_date | Oct 24 2012
| | Sample_last_update_date | Nov 02 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | Animals were grown to postnatal day 2, 4, 6 or 8 where eyes were enucleaded and retinas isolated. 8-14 retinas were combined per sample.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated from retinas using TRIzol reagent according to manufacture's protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip MOE430A arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetric GeneArray 2500 scanner.
| | Sample_data_processing | Expression scores were obtained using Robust Multichip Average to do background correction, quantile normalization and summarization. Normalized data was subjected to a two-stage analysis based on FDR-CI.
| | Sample_platform_id | GPL339
| | Sample_contact_name | Matthew ,J,Brooks
| | Sample_contact_email | brooksma@mail.nih.gov
| | Sample_contact_phone | 301-605-4063
| | Sample_contact_laboratory | NNRL
| | Sample_contact_department | NEI
| | Sample_contact_institute | NIH
| | Sample_contact_address | 6 Center Dr Bldg 6, Rm 336
| | Sample_contact_city | Bethesda
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20892
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1024nnn/GSM1024806/suppl/GSM1024806_CP2-32.CEL.gz
| | Sample_series_id | GSE41821
| | Sample_data_row_count | 22690
| | |
|
GSM1024807 | GPL339 |
|
wt_P4_rep1
|
wild type mouse retina at age postnatal day 4
|
tissue: retina
age: postnatal day 4
genotype: wild type
|
|
| Sample_geo_accession | GSM1024807
| | Sample_status | Public on Nov 02 2012
| | Sample_submission_date | Oct 24 2012
| | Sample_last_update_date | Nov 02 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | Animals were grown to postnatal day 2, 4, 6 or 8 where eyes were enucleaded and retinas isolated. 8-14 retinas were combined per sample.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated from retinas using TRIzol reagent according to manufacture's protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip MOE430A arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetric GeneArray 2500 scanner.
| | Sample_data_processing | Expression scores were obtained using Robust Multichip Average to do background correction, quantile normalization and summarization. Normalized data was subjected to a two-stage analysis based on FDR-CI.
| | Sample_platform_id | GPL339
| | Sample_contact_name | Matthew ,J,Brooks
| | Sample_contact_email | brooksma@mail.nih.gov
| | Sample_contact_phone | 301-605-4063
| | Sample_contact_laboratory | NNRL
| | Sample_contact_department | NEI
| | Sample_contact_institute | NIH
| | Sample_contact_address | 6 Center Dr Bldg 6, Rm 336
| | Sample_contact_city | Bethesda
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20892
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1024nnn/GSM1024807/suppl/GSM1024807_CP4-21.CEL.gz
| | Sample_series_id | GSE41821
| | Sample_data_row_count | 22690
| | |
|
GSM1024808 | GPL339 |
|
wt_P4_rep2
|
wild type mouse retina at age postnatal day 4
|
tissue: retina
age: postnatal day 4
genotype: wild type
|
|
| Sample_geo_accession | GSM1024808
| | Sample_status | Public on Nov 02 2012
| | Sample_submission_date | Oct 24 2012
| | Sample_last_update_date | Nov 02 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | Animals were grown to postnatal day 2, 4, 6 or 8 where eyes were enucleaded and retinas isolated. 8-14 retinas were combined per sample.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated from retinas using TRIzol reagent according to manufacture's protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip MOE430A arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetric GeneArray 2500 scanner.
| | Sample_data_processing | Expression scores were obtained using Robust Multichip Average to do background correction, quantile normalization and summarization. Normalized data was subjected to a two-stage analysis based on FDR-CI.
| | Sample_platform_id | GPL339
| | Sample_contact_name | Matthew ,J,Brooks
| | Sample_contact_email | brooksma@mail.nih.gov
| | Sample_contact_phone | 301-605-4063
| | Sample_contact_laboratory | NNRL
| | Sample_contact_department | NEI
| | Sample_contact_institute | NIH
| | Sample_contact_address | 6 Center Dr Bldg 6, Rm 336
| | Sample_contact_city | Bethesda
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20892
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1024nnn/GSM1024808/suppl/GSM1024808_CP4-22.CEL.gz
| | Sample_series_id | GSE41821
| | Sample_data_row_count | 22690
| | |
|
GSM1024809 | GPL339 |
|
wt_P4_rep3
|
wild type mouse retina at age postnatal day 4
|
tissue: retina
age: postnatal day 4
genotype: wild type
|
|
| Sample_geo_accession | GSM1024809
| | Sample_status | Public on Nov 02 2012
| | Sample_submission_date | Oct 24 2012
| | Sample_last_update_date | Nov 02 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | Animals were grown to postnatal day 2, 4, 6 or 8 where eyes were enucleaded and retinas isolated. 8-14 retinas were combined per sample.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated from retinas using TRIzol reagent according to manufacture's protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip MOE430A arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetric GeneArray 2500 scanner.
| | Sample_data_processing | Expression scores were obtained using Robust Multichip Average to do background correction, quantile normalization and summarization. Normalized data was subjected to a two-stage analysis based on FDR-CI.
| | Sample_platform_id | GPL339
| | Sample_contact_name | Matthew ,J,Brooks
| | Sample_contact_email | brooksma@mail.nih.gov
| | Sample_contact_phone | 301-605-4063
| | Sample_contact_laboratory | NNRL
| | Sample_contact_department | NEI
| | Sample_contact_institute | NIH
| | Sample_contact_address | 6 Center Dr Bldg 6, Rm 336
| | Sample_contact_city | Bethesda
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20892
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1024nnn/GSM1024809/suppl/GSM1024809_CP4-23.CEL.gz
| | Sample_series_id | GSE41821
| | Sample_data_row_count | 22690
| | |
|
GSM1024810 | GPL339 |
|
wt_P4_rep4
|
wild type mouse retina at age postnatal day 4
|
tissue: retina
age: postnatal day 4
genotype: wild type
|
|
| Sample_geo_accession | GSM1024810
| | Sample_status | Public on Nov 02 2012
| | Sample_submission_date | Oct 24 2012
| | Sample_last_update_date | Nov 02 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | Animals were grown to postnatal day 2, 4, 6 or 8 where eyes were enucleaded and retinas isolated. 8-14 retinas were combined per sample.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated from retinas using TRIzol reagent according to manufacture's protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip MOE430A arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetric GeneArray 2500 scanner.
| | Sample_data_processing | Expression scores were obtained using Robust Multichip Average to do background correction, quantile normalization and summarization. Normalized data was subjected to a two-stage analysis based on FDR-CI.
| | Sample_platform_id | GPL339
| | Sample_contact_name | Matthew ,J,Brooks
| | Sample_contact_email | brooksma@mail.nih.gov
| | Sample_contact_phone | 301-605-4063
| | Sample_contact_laboratory | NNRL
| | Sample_contact_department | NEI
| | Sample_contact_institute | NIH
| | Sample_contact_address | 6 Center Dr Bldg 6, Rm 336
| | Sample_contact_city | Bethesda
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20892
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1024nnn/GSM1024810/suppl/GSM1024810_CP4-25.CEL.gz
| | Sample_series_id | GSE41821
| | Sample_data_row_count | 22690
| | |
|
GSM1024811 | GPL339 |
|
wt_P6_rep1
|
wild type mouse retina at age postnatal day 6
|
tissue: retina
age: postnatal day 6
genotype: wild type
|
|
| Sample_geo_accession | GSM1024811
| | Sample_status | Public on Nov 02 2012
| | Sample_submission_date | Oct 24 2012
| | Sample_last_update_date | Nov 02 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | Animals were grown to postnatal day 2, 4, 6 or 8 where eyes were enucleaded and retinas isolated. 8-14 retinas were combined per sample.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated from retinas using TRIzol reagent according to manufacture's protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip MOE430A arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetric GeneArray 2500 scanner.
| | Sample_data_processing | Expression scores were obtained using Robust Multichip Average to do background correction, quantile normalization and summarization. Normalized data was subjected to a two-stage analysis based on FDR-CI.
| | Sample_platform_id | GPL339
| | Sample_contact_name | Matthew ,J,Brooks
| | Sample_contact_email | brooksma@mail.nih.gov
| | Sample_contact_phone | 301-605-4063
| | Sample_contact_laboratory | NNRL
| | Sample_contact_department | NEI
| | Sample_contact_institute | NIH
| | Sample_contact_address | 6 Center Dr Bldg 6, Rm 336
| | Sample_contact_city | Bethesda
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20892
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1024nnn/GSM1024811/suppl/GSM1024811_CP6-21.CEL.gz
| | Sample_series_id | GSE41821
| | Sample_data_row_count | 22690
| | |
|
GSM1024812 | GPL339 |
|
wt_P6_rep2
|
wild type mouse retina at age postnatal day 6
|
tissue: retina
age: postnatal day 6
genotype: wild type
|
|
| Sample_geo_accession | GSM1024812
| | Sample_status | Public on Nov 02 2012
| | Sample_submission_date | Oct 24 2012
| | Sample_last_update_date | Nov 02 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | Animals were grown to postnatal day 2, 4, 6 or 8 where eyes were enucleaded and retinas isolated. 8-14 retinas were combined per sample.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated from retinas using TRIzol reagent according to manufacture's protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip MOE430A arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetric GeneArray 2500 scanner.
| | Sample_data_processing | Expression scores were obtained using Robust Multichip Average to do background correction, quantile normalization and summarization. Normalized data was subjected to a two-stage analysis based on FDR-CI.
| | Sample_platform_id | GPL339
| | Sample_contact_name | Matthew ,J,Brooks
| | Sample_contact_email | brooksma@mail.nih.gov
| | Sample_contact_phone | 301-605-4063
| | Sample_contact_laboratory | NNRL
| | Sample_contact_department | NEI
| | Sample_contact_institute | NIH
| | Sample_contact_address | 6 Center Dr Bldg 6, Rm 336
| | Sample_contact_city | Bethesda
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20892
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1024nnn/GSM1024812/suppl/GSM1024812_CP6-22.CEL.gz
| | Sample_series_id | GSE41821
| | Sample_data_row_count | 22690
| | |
|
GSM1024813 | GPL339 |
|
wt_P6_rep3
|
wild type mouse retina at age postnatal day 6
|
tissue: retina
age: postnatal day 6
genotype: wild type
|
|
| Sample_geo_accession | GSM1024813
| | Sample_status | Public on Nov 02 2012
| | Sample_submission_date | Oct 24 2012
| | Sample_last_update_date | Nov 02 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | Animals were grown to postnatal day 2, 4, 6 or 8 where eyes were enucleaded and retinas isolated. 8-14 retinas were combined per sample.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated from retinas using TRIzol reagent according to manufacture's protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip MOE430A arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetric GeneArray 2500 scanner.
| | Sample_data_processing | Expression scores were obtained using Robust Multichip Average to do background correction, quantile normalization and summarization. Normalized data was subjected to a two-stage analysis based on FDR-CI.
| | Sample_platform_id | GPL339
| | Sample_contact_name | Matthew ,J,Brooks
| | Sample_contact_email | brooksma@mail.nih.gov
| | Sample_contact_phone | 301-605-4063
| | Sample_contact_laboratory | NNRL
| | Sample_contact_department | NEI
| | Sample_contact_institute | NIH
| | Sample_contact_address | 6 Center Dr Bldg 6, Rm 336
| | Sample_contact_city | Bethesda
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20892
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1024nnn/GSM1024813/suppl/GSM1024813_CP6-23.CEL.gz
| | Sample_series_id | GSE41821
| | Sample_data_row_count | 22690
| | |
|
GSM1024814 | GPL339 |
|
wt_P6_rep4
|
wild type mouse retina at age postnatal day 6
|
tissue: retina
age: postnatal day 6
genotype: wild type
|
|
| Sample_geo_accession | GSM1024814
| | Sample_status | Public on Nov 02 2012
| | Sample_submission_date | Oct 24 2012
| | Sample_last_update_date | Nov 02 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | Animals were grown to postnatal day 2, 4, 6 or 8 where eyes were enucleaded and retinas isolated. 8-14 retinas were combined per sample.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated from retinas using TRIzol reagent according to manufacture's protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip MOE430A arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetric GeneArray 2500 scanner.
| | Sample_data_processing | Expression scores were obtained using Robust Multichip Average to do background correction, quantile normalization and summarization. Normalized data was subjected to a two-stage analysis based on FDR-CI.
| | Sample_platform_id | GPL339
| | Sample_contact_name | Matthew ,J,Brooks
| | Sample_contact_email | brooksma@mail.nih.gov
| | Sample_contact_phone | 301-605-4063
| | Sample_contact_laboratory | NNRL
| | Sample_contact_department | NEI
| | Sample_contact_institute | NIH
| | Sample_contact_address | 6 Center Dr Bldg 6, Rm 336
| | Sample_contact_city | Bethesda
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20892
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1024nnn/GSM1024814/suppl/GSM1024814_CP6-24.CEL.gz
| | Sample_series_id | GSE41821
| | Sample_data_row_count | 22690
| | |
|
GSM1024815 | GPL339 |
|
wt_P8_rep1
|
wild type mouse retina at age postnatal day 8
|
tissue: retina
age: postnatal day 8
genotype: wild type
|
|
| Sample_geo_accession | GSM1024815
| | Sample_status | Public on Nov 02 2012
| | Sample_submission_date | Oct 24 2012
| | Sample_last_update_date | Nov 02 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | Animals were grown to postnatal day 2, 4, 6 or 8 where eyes were enucleaded and retinas isolated. 8-14 retinas were combined per sample.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated from retinas using TRIzol reagent according to manufacture's protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip MOE430A arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetric GeneArray 2500 scanner.
| | Sample_data_processing | Expression scores were obtained using Robust Multichip Average to do background correction, quantile normalization and summarization. Normalized data was subjected to a two-stage analysis based on FDR-CI.
| | Sample_platform_id | GPL339
| | Sample_contact_name | Matthew ,J,Brooks
| | Sample_contact_email | brooksma@mail.nih.gov
| | Sample_contact_phone | 301-605-4063
| | Sample_contact_laboratory | NNRL
| | Sample_contact_department | NEI
| | Sample_contact_institute | NIH
| | Sample_contact_address | 6 Center Dr Bldg 6, Rm 336
| | Sample_contact_city | Bethesda
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20892
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1024nnn/GSM1024815/suppl/GSM1024815_CP8-21.CEL.gz
| | Sample_series_id | GSE41821
| | Sample_data_row_count | 22690
| | |
|
GSM1024816 | GPL339 |
|
wt_P8_rep2
|
wild type mouse retina at age postnatal day 8
|
tissue: retina
age: postnatal day 8
genotype: wild type
|
|
| Sample_geo_accession | GSM1024816
| | Sample_status | Public on Nov 02 2012
| | Sample_submission_date | Oct 24 2012
| | Sample_last_update_date | Nov 02 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | Animals were grown to postnatal day 2, 4, 6 or 8 where eyes were enucleaded and retinas isolated. 8-14 retinas were combined per sample.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated from retinas using TRIzol reagent according to manufacture's protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip MOE430A arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetric GeneArray 2500 scanner.
| | Sample_data_processing | Expression scores were obtained using Robust Multichip Average to do background correction, quantile normalization and summarization. Normalized data was subjected to a two-stage analysis based on FDR-CI.
| | Sample_platform_id | GPL339
| | Sample_contact_name | Matthew ,J,Brooks
| | Sample_contact_email | brooksma@mail.nih.gov
| | Sample_contact_phone | 301-605-4063
| | Sample_contact_laboratory | NNRL
| | Sample_contact_department | NEI
| | Sample_contact_institute | NIH
| | Sample_contact_address | 6 Center Dr Bldg 6, Rm 336
| | Sample_contact_city | Bethesda
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20892
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1024nnn/GSM1024816/suppl/GSM1024816_CP8-22.CEL.gz
| | Sample_series_id | GSE41821
| | Sample_data_row_count | 22690
| | |
|
GSM1024817 | GPL339 |
|
wt_P8_rep3
|
wild type mouse retina at age postnatal day 8
|
tissue: retina
age: postnatal day 8
genotype: wild type
|
|
| Sample_geo_accession | GSM1024817
| | Sample_status | Public on Nov 02 2012
| | Sample_submission_date | Oct 24 2012
| | Sample_last_update_date | Nov 02 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | Animals were grown to postnatal day 2, 4, 6 or 8 where eyes were enucleaded and retinas isolated. 8-14 retinas were combined per sample.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated from retinas using TRIzol reagent according to manufacture's protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip MOE430A arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetric GeneArray 2500 scanner.
| | Sample_data_processing | Expression scores were obtained using Robust Multichip Average to do background correction, quantile normalization and summarization. Normalized data was subjected to a two-stage analysis based on FDR-CI.
| | Sample_platform_id | GPL339
| | Sample_contact_name | Matthew ,J,Brooks
| | Sample_contact_email | brooksma@mail.nih.gov
| | Sample_contact_phone | 301-605-4063
| | Sample_contact_laboratory | NNRL
| | Sample_contact_department | NEI
| | Sample_contact_institute | NIH
| | Sample_contact_address | 6 Center Dr Bldg 6, Rm 336
| | Sample_contact_city | Bethesda
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20892
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1024nnn/GSM1024817/suppl/GSM1024817_CP8-23.CEL.gz
| | Sample_series_id | GSE41821
| | Sample_data_row_count | 22690
| | |
|
GSM1024818 | GPL339 |
|
wt_P8_rep4
|
wild type mouse retina at age postnatal day 8
|
tissue: retina
age: postnatal day 8
genotype: wild type
|
|
| Sample_geo_accession | GSM1024818
| | Sample_status | Public on Nov 02 2012
| | Sample_submission_date | Oct 24 2012
| | Sample_last_update_date | Nov 02 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | Animals were grown to postnatal day 2, 4, 6 or 8 where eyes were enucleaded and retinas isolated. 8-14 retinas were combined per sample.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated from retinas using TRIzol reagent according to manufacture's protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip MOE430A arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetric GeneArray 2500 scanner.
| | Sample_data_processing | Expression scores were obtained using Robust Multichip Average to do background correction, quantile normalization and summarization. Normalized data was subjected to a two-stage analysis based on FDR-CI.
| | Sample_platform_id | GPL339
| | Sample_contact_name | Matthew ,J,Brooks
| | Sample_contact_email | brooksma@mail.nih.gov
| | Sample_contact_phone | 301-605-4063
| | Sample_contact_laboratory | NNRL
| | Sample_contact_department | NEI
| | Sample_contact_institute | NIH
| | Sample_contact_address | 6 Center Dr Bldg 6, Rm 336
| | Sample_contact_city | Bethesda
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20892
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1024nnn/GSM1024818/suppl/GSM1024818_CP8-24.CEL.gz
| | Sample_series_id | GSE41821
| | Sample_data_row_count | 22690
| | |
|
GSM1024819 | GPL339 |
|
rd1_P2_rep1
|
rd1 mouse retina at age postnatal day 2
|
tissue: retina
age: postnatal day 2
genotype: rd1
|
|
| Sample_geo_accession | GSM1024819
| | Sample_status | Public on Nov 02 2012
| | Sample_submission_date | Oct 24 2012
| | Sample_last_update_date | Nov 02 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | Animals were grown to postnatal day 2, 4, 6 or 8 where eyes were enucleaded and retinas isolated. 8-14 retinas were combined per sample.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated from retinas using TRIzol reagent according to manufacture's protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip MOE430A arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetric GeneArray 2500 scanner.
| | Sample_data_processing | Expression scores were obtained using Robust Multichip Average to do background correction, quantile normalization and summarization. Normalized data was subjected to a two-stage analysis based on FDR-CI.
| | Sample_platform_id | GPL339
| | Sample_contact_name | Matthew ,J,Brooks
| | Sample_contact_email | brooksma@mail.nih.gov
| | Sample_contact_phone | 301-605-4063
| | Sample_contact_laboratory | NNRL
| | Sample_contact_department | NEI
| | Sample_contact_institute | NIH
| | Sample_contact_address | 6 Center Dr Bldg 6, Rm 336
| | Sample_contact_city | Bethesda
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20892
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1024nnn/GSM1024819/suppl/GSM1024819_P2-23.CEL.gz
| | Sample_series_id | GSE41821
| | Sample_data_row_count | 22690
| | |
|
GSM1024820 | GPL339 |
|
rd1_P2_rep2
|
rd1 mouse retina at age postnatal day 2
|
tissue: retina
age: postnatal day 2
genotype: rd1
|
|
| Sample_geo_accession | GSM1024820
| | Sample_status | Public on Nov 02 2012
| | Sample_submission_date | Oct 24 2012
| | Sample_last_update_date | Nov 02 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | Animals were grown to postnatal day 2, 4, 6 or 8 where eyes were enucleaded and retinas isolated. 8-14 retinas were combined per sample.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated from retinas using TRIzol reagent according to manufacture's protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip MOE430A arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetric GeneArray 2500 scanner.
| | Sample_data_processing | Expression scores were obtained using Robust Multichip Average to do background correction, quantile normalization and summarization. Normalized data was subjected to a two-stage analysis based on FDR-CI.
| | Sample_platform_id | GPL339
| | Sample_contact_name | Matthew ,J,Brooks
| | Sample_contact_email | brooksma@mail.nih.gov
| | Sample_contact_phone | 301-605-4063
| | Sample_contact_laboratory | NNRL
| | Sample_contact_department | NEI
| | Sample_contact_institute | NIH
| | Sample_contact_address | 6 Center Dr Bldg 6, Rm 336
| | Sample_contact_city | Bethesda
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20892
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1024nnn/GSM1024820/suppl/GSM1024820_P2-26.CEL.gz
| | Sample_series_id | GSE41821
| | Sample_data_row_count | 22690
| | |
|
GSM1024821 | GPL339 |
|
rd1_P2_rep3
|
rd1 mouse retina at age postnatal day 2
|
tissue: retina
age: postnatal day 2
genotype: rd1
|
|
| Sample_geo_accession | GSM1024821
| | Sample_status | Public on Nov 02 2012
| | Sample_submission_date | Oct 24 2012
| | Sample_last_update_date | Nov 02 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | Animals were grown to postnatal day 2, 4, 6 or 8 where eyes were enucleaded and retinas isolated. 8-14 retinas were combined per sample.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated from retinas using TRIzol reagent according to manufacture's protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip MOE430A arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetric GeneArray 2500 scanner.
| | Sample_data_processing | Expression scores were obtained using Robust Multichip Average to do background correction, quantile normalization and summarization. Normalized data was subjected to a two-stage analysis based on FDR-CI.
| | Sample_platform_id | GPL339
| | Sample_contact_name | Matthew ,J,Brooks
| | Sample_contact_email | brooksma@mail.nih.gov
| | Sample_contact_phone | 301-605-4063
| | Sample_contact_laboratory | NNRL
| | Sample_contact_department | NEI
| | Sample_contact_institute | NIH
| | Sample_contact_address | 6 Center Dr Bldg 6, Rm 336
| | Sample_contact_city | Bethesda
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20892
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1024nnn/GSM1024821/suppl/GSM1024821_P2-28.CEL.gz
| | Sample_series_id | GSE41821
| | Sample_data_row_count | 22690
| | |
|
GSM1024822 | GPL339 |
|
rd1_P2_rep4
|
rd1 mouse retina at age postnatal day 2
|
tissue: retina
age: postnatal day 2
genotype: rd1
|
|
| Sample_geo_accession | GSM1024822
| | Sample_status | Public on Nov 02 2012
| | Sample_submission_date | Oct 24 2012
| | Sample_last_update_date | Nov 02 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | Animals were grown to postnatal day 2, 4, 6 or 8 where eyes were enucleaded and retinas isolated. 8-14 retinas were combined per sample.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated from retinas using TRIzol reagent according to manufacture's protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip MOE430A arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetric GeneArray 2500 scanner.
| | Sample_data_processing | Expression scores were obtained using Robust Multichip Average to do background correction, quantile normalization and summarization. Normalized data was subjected to a two-stage analysis based on FDR-CI.
| | Sample_platform_id | GPL339
| | Sample_contact_name | Matthew ,J,Brooks
| | Sample_contact_email | brooksma@mail.nih.gov
| | Sample_contact_phone | 301-605-4063
| | Sample_contact_laboratory | NNRL
| | Sample_contact_department | NEI
| | Sample_contact_institute | NIH
| | Sample_contact_address | 6 Center Dr Bldg 6, Rm 336
| | Sample_contact_city | Bethesda
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20892
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1024nnn/GSM1024822/suppl/GSM1024822_P2-30.CEL.gz
| | Sample_series_id | GSE41821
| | Sample_data_row_count | 22690
| | |
|
GSM1024823 | GPL339 |
|
rd1_P4_rep1
|
rd1 mouse retina at age postnatal day 4
|
tissue: retina
age: postnatal day 4
genotype: rd1
|
|
| Sample_geo_accession | GSM1024823
| | Sample_status | Public on Nov 02 2012
| | Sample_submission_date | Oct 24 2012
| | Sample_last_update_date | Nov 02 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | Animals were grown to postnatal day 2, 4, 6 or 8 where eyes were enucleaded and retinas isolated. 8-14 retinas were combined per sample.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated from retinas using TRIzol reagent according to manufacture's protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip MOE430A arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetric GeneArray 2500 scanner.
| | Sample_data_processing | Expression scores were obtained using Robust Multichip Average to do background correction, quantile normalization and summarization. Normalized data was subjected to a two-stage analysis based on FDR-CI.
| | Sample_platform_id | GPL339
| | Sample_contact_name | Matthew ,J,Brooks
| | Sample_contact_email | brooksma@mail.nih.gov
| | Sample_contact_phone | 301-605-4063
| | Sample_contact_laboratory | NNRL
| | Sample_contact_department | NEI
| | Sample_contact_institute | NIH
| | Sample_contact_address | 6 Center Dr Bldg 6, Rm 336
| | Sample_contact_city | Bethesda
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20892
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1024nnn/GSM1024823/suppl/GSM1024823_P4-21.CEL.gz
| | Sample_series_id | GSE41821
| | Sample_data_row_count | 22690
| | |
|
GSM1024824 | GPL339 |
|
rd1_P4_rep2
|
rd1 mouse retina at age postnatal day 4
|
tissue: retina
age: postnatal day 4
genotype: rd1
|
|
| Sample_geo_accession | GSM1024824
| | Sample_status | Public on Nov 02 2012
| | Sample_submission_date | Oct 24 2012
| | Sample_last_update_date | Nov 02 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | Animals were grown to postnatal day 2, 4, 6 or 8 where eyes were enucleaded and retinas isolated. 8-14 retinas were combined per sample.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated from retinas using TRIzol reagent according to manufacture's protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip MOE430A arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetric GeneArray 2500 scanner.
| | Sample_data_processing | Expression scores were obtained using Robust Multichip Average to do background correction, quantile normalization and summarization. Normalized data was subjected to a two-stage analysis based on FDR-CI.
| | Sample_platform_id | GPL339
| | Sample_contact_name | Matthew ,J,Brooks
| | Sample_contact_email | brooksma@mail.nih.gov
| | Sample_contact_phone | 301-605-4063
| | Sample_contact_laboratory | NNRL
| | Sample_contact_department | NEI
| | Sample_contact_institute | NIH
| | Sample_contact_address | 6 Center Dr Bldg 6, Rm 336
| | Sample_contact_city | Bethesda
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20892
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1024nnn/GSM1024824/suppl/GSM1024824_P4-24.CEL.gz
| | Sample_series_id | GSE41821
| | Sample_data_row_count | 22690
| | |
|
GSM1024825 | GPL339 |
|
rd1_P4_rep3
|
rd1 mouse retina at age postnatal day 4
|
tissue: retina
age: postnatal day 4
genotype: rd1
|
|
| Sample_geo_accession | GSM1024825
| | Sample_status | Public on Nov 02 2012
| | Sample_submission_date | Oct 24 2012
| | Sample_last_update_date | Nov 02 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | Animals were grown to postnatal day 2, 4, 6 or 8 where eyes were enucleaded and retinas isolated. 8-14 retinas were combined per sample.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated from retinas using TRIzol reagent according to manufacture's protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip MOE430A arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetric GeneArray 2500 scanner.
| | Sample_data_processing | Expression scores were obtained using Robust Multichip Average to do background correction, quantile normalization and summarization. Normalized data was subjected to a two-stage analysis based on FDR-CI.
| | Sample_platform_id | GPL339
| | Sample_contact_name | Matthew ,J,Brooks
| | Sample_contact_email | brooksma@mail.nih.gov
| | Sample_contact_phone | 301-605-4063
| | Sample_contact_laboratory | NNRL
| | Sample_contact_department | NEI
| | Sample_contact_institute | NIH
| | Sample_contact_address | 6 Center Dr Bldg 6, Rm 336
| | Sample_contact_city | Bethesda
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20892
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1024nnn/GSM1024825/suppl/GSM1024825_P4-25.CEL.gz
| | Sample_series_id | GSE41821
| | Sample_data_row_count | 22690
| | |
|
GSM1024826 | GPL339 |
|
rd1_P4_rep4
|
rd1 mouse retina at age postnatal day 4
|
tissue: retina
age: postnatal day 4
genotype: rd1
|
|
| Sample_geo_accession | GSM1024826
| | Sample_status | Public on Nov 02 2012
| | Sample_submission_date | Oct 24 2012
| | Sample_last_update_date | Nov 02 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | Animals were grown to postnatal day 2, 4, 6 or 8 where eyes were enucleaded and retinas isolated. 8-14 retinas were combined per sample.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated from retinas using TRIzol reagent according to manufacture's protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip MOE430A arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetric GeneArray 2500 scanner.
| | Sample_data_processing | Expression scores were obtained using Robust Multichip Average to do background correction, quantile normalization and summarization. Normalized data was subjected to a two-stage analysis based on FDR-CI.
| | Sample_platform_id | GPL339
| | Sample_contact_name | Matthew ,J,Brooks
| | Sample_contact_email | brooksma@mail.nih.gov
| | Sample_contact_phone | 301-605-4063
| | Sample_contact_laboratory | NNRL
| | Sample_contact_department | NEI
| | Sample_contact_institute | NIH
| | Sample_contact_address | 6 Center Dr Bldg 6, Rm 336
| | Sample_contact_city | Bethesda
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20892
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1024nnn/GSM1024826/suppl/GSM1024826_P4-26.CEL.gz
| | Sample_series_id | GSE41821
| | Sample_data_row_count | 22690
| | |
|
GSM1024827 | GPL339 |
|
rd1_P6_rep1
|
rd1 mouse retina at age postnatal day 6
|
tissue: retina
age: postnatal day 6
genotype: rd1
|
|
| Sample_geo_accession | GSM1024827
| | Sample_status | Public on Nov 02 2012
| | Sample_submission_date | Oct 24 2012
| | Sample_last_update_date | Nov 02 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | Animals were grown to postnatal day 2, 4, 6 or 8 where eyes were enucleaded and retinas isolated. 8-14 retinas were combined per sample.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated from retinas using TRIzol reagent according to manufacture's protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip MOE430A arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetric GeneArray 2500 scanner.
| | Sample_data_processing | Expression scores were obtained using Robust Multichip Average to do background correction, quantile normalization and summarization. Normalized data was subjected to a two-stage analysis based on FDR-CI.
| | Sample_platform_id | GPL339
| | Sample_contact_name | Matthew ,J,Brooks
| | Sample_contact_email | brooksma@mail.nih.gov
| | Sample_contact_phone | 301-605-4063
| | Sample_contact_laboratory | NNRL
| | Sample_contact_department | NEI
| | Sample_contact_institute | NIH
| | Sample_contact_address | 6 Center Dr Bldg 6, Rm 336
| | Sample_contact_city | Bethesda
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20892
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1024nnn/GSM1024827/suppl/GSM1024827_P6-21.CEL.gz
| | Sample_series_id | GSE41821
| | Sample_data_row_count | 22690
| | |
|
GSM1024828 | GPL339 |
|
rd1_P6_rep2
|
rd1 mouse retina at age postnatal day 6
|
tissue: retina
age: postnatal day 6
genotype: rd1
|
|
| Sample_geo_accession | GSM1024828
| | Sample_status | Public on Nov 02 2012
| | Sample_submission_date | Oct 24 2012
| | Sample_last_update_date | Nov 02 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | Animals were grown to postnatal day 2, 4, 6 or 8 where eyes were enucleaded and retinas isolated. 8-14 retinas were combined per sample.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated from retinas using TRIzol reagent according to manufacture's protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip MOE430A arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetric GeneArray 2500 scanner.
| | Sample_data_processing | Expression scores were obtained using Robust Multichip Average to do background correction, quantile normalization and summarization. Normalized data was subjected to a two-stage analysis based on FDR-CI.
| | Sample_platform_id | GPL339
| | Sample_contact_name | Matthew ,J,Brooks
| | Sample_contact_email | brooksma@mail.nih.gov
| | Sample_contact_phone | 301-605-4063
| | Sample_contact_laboratory | NNRL
| | Sample_contact_department | NEI
| | Sample_contact_institute | NIH
| | Sample_contact_address | 6 Center Dr Bldg 6, Rm 336
| | Sample_contact_city | Bethesda
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20892
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1024nnn/GSM1024828/suppl/GSM1024828_P6-24.CEL.gz
| | Sample_series_id | GSE41821
| | Sample_data_row_count | 22690
| | |
|
GSM1024829 | GPL339 |
|
rd1_P6_rep3
|
rd1 mouse retina at age postnatal day 6
|
tissue: retina
age: postnatal day 6
genotype: rd1
|
|
| Sample_geo_accession | GSM1024829
| | Sample_status | Public on Nov 02 2012
| | Sample_submission_date | Oct 24 2012
| | Sample_last_update_date | Nov 02 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | Animals were grown to postnatal day 2, 4, 6 or 8 where eyes were enucleaded and retinas isolated. 8-14 retinas were combined per sample.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated from retinas using TRIzol reagent according to manufacture's protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip MOE430A arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetric GeneArray 2500 scanner.
| | Sample_data_processing | Expression scores were obtained using Robust Multichip Average to do background correction, quantile normalization and summarization. Normalized data was subjected to a two-stage analysis based on FDR-CI.
| | Sample_platform_id | GPL339
| | Sample_contact_name | Matthew ,J,Brooks
| | Sample_contact_email | brooksma@mail.nih.gov
| | Sample_contact_phone | 301-605-4063
| | Sample_contact_laboratory | NNRL
| | Sample_contact_department | NEI
| | Sample_contact_institute | NIH
| | Sample_contact_address | 6 Center Dr Bldg 6, Rm 336
| | Sample_contact_city | Bethesda
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20892
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1024nnn/GSM1024829/suppl/GSM1024829_P6-26.CEL.gz
| | Sample_series_id | GSE41821
| | Sample_data_row_count | 22690
| | |
|
GSM1024830 | GPL339 |
|
rd1_P6_rep4
|
rd1 mouse retina at age postnatal day 6
|
tissue: retina
age: postnatal day 6
genotype: rd1
|
|
| Sample_geo_accession | GSM1024830
| | Sample_status | Public on Nov 02 2012
| | Sample_submission_date | Oct 24 2012
| | Sample_last_update_date | Nov 02 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | Animals were grown to postnatal day 2, 4, 6 or 8 where eyes were enucleaded and retinas isolated. 8-14 retinas were combined per sample.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated from retinas using TRIzol reagent according to manufacture's protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip MOE430A arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetric GeneArray 2500 scanner.
| | Sample_data_processing | Expression scores were obtained using Robust Multichip Average to do background correction, quantile normalization and summarization. Normalized data was subjected to a two-stage analysis based on FDR-CI.
| | Sample_platform_id | GPL339
| | Sample_contact_name | Matthew ,J,Brooks
| | Sample_contact_email | brooksma@mail.nih.gov
| | Sample_contact_phone | 301-605-4063
| | Sample_contact_laboratory | NNRL
| | Sample_contact_department | NEI
| | Sample_contact_institute | NIH
| | Sample_contact_address | 6 Center Dr Bldg 6, Rm 336
| | Sample_contact_city | Bethesda
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20892
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1024nnn/GSM1024830/suppl/GSM1024830_P6-27.CEL.gz
| | Sample_series_id | GSE41821
| | Sample_data_row_count | 22690
| | |
|
GSM1024831 | GPL339 |
|
rd1_P8_rep1
|
rd1 mouse retina at age postnatal day 8
|
tissue: retina
age: postnatal day 8
genotype: rd1
|
|
| Sample_geo_accession | GSM1024831
| | Sample_status | Public on Nov 02 2012
| | Sample_submission_date | Oct 24 2012
| | Sample_last_update_date | Nov 02 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | Animals were grown to postnatal day 2, 4, 6 or 8 where eyes were enucleaded and retinas isolated. 8-14 retinas were combined per sample.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated from retinas using TRIzol reagent according to manufacture's protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip MOE430A arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetric GeneArray 2500 scanner.
| | Sample_data_processing | Expression scores were obtained using Robust Multichip Average to do background correction, quantile normalization and summarization. Normalized data was subjected to a two-stage analysis based on FDR-CI.
| | Sample_platform_id | GPL339
| | Sample_contact_name | Matthew ,J,Brooks
| | Sample_contact_email | brooksma@mail.nih.gov
| | Sample_contact_phone | 301-605-4063
| | Sample_contact_laboratory | NNRL
| | Sample_contact_department | NEI
| | Sample_contact_institute | NIH
| | Sample_contact_address | 6 Center Dr Bldg 6, Rm 336
| | Sample_contact_city | Bethesda
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20892
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1024nnn/GSM1024831/suppl/GSM1024831_P8-21.CEL.gz
| | Sample_series_id | GSE41821
| | Sample_data_row_count | 22690
| | |
|
GSM1024832 | GPL339 |
|
rd1_P8_rep2
|
rd1 mouse retina at age postnatal day 8
|
tissue: retina
age: postnatal day 8
genotype: rd1
|
|
| Sample_geo_accession | GSM1024832
| | Sample_status | Public on Nov 02 2012
| | Sample_submission_date | Oct 24 2012
| | Sample_last_update_date | Nov 02 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | Animals were grown to postnatal day 2, 4, 6 or 8 where eyes were enucleaded and retinas isolated. 8-14 retinas were combined per sample.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated from retinas using TRIzol reagent according to manufacture's protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip MOE430A arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetric GeneArray 2500 scanner.
| | Sample_data_processing | Expression scores were obtained using Robust Multichip Average to do background correction, quantile normalization and summarization. Normalized data was subjected to a two-stage analysis based on FDR-CI.
| | Sample_platform_id | GPL339
| | Sample_contact_name | Matthew ,J,Brooks
| | Sample_contact_email | brooksma@mail.nih.gov
| | Sample_contact_phone | 301-605-4063
| | Sample_contact_laboratory | NNRL
| | Sample_contact_department | NEI
| | Sample_contact_institute | NIH
| | Sample_contact_address | 6 Center Dr Bldg 6, Rm 336
| | Sample_contact_city | Bethesda
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20892
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1024nnn/GSM1024832/suppl/GSM1024832_P8-22.CEL.gz
| | Sample_series_id | GSE41821
| | Sample_data_row_count | 22690
| | |
|
GSM1024833 | GPL339 |
|
rd1_P8_rep3
|
rd1 mouse retina at age postnatal day 8
|
tissue: retina
age: postnatal day 8
genotype: rd1
|
|
| Sample_geo_accession | GSM1024833
| | Sample_status | Public on Nov 02 2012
| | Sample_submission_date | Oct 24 2012
| | Sample_last_update_date | Nov 02 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | Animals were grown to postnatal day 2, 4, 6 or 8 where eyes were enucleaded and retinas isolated. 8-14 retinas were combined per sample.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated from retinas using TRIzol reagent according to manufacture's protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip MOE430A arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetric GeneArray 2500 scanner.
| | Sample_data_processing | Expression scores were obtained using Robust Multichip Average to do background correction, quantile normalization and summarization. Normalized data was subjected to a two-stage analysis based on FDR-CI.
| | Sample_platform_id | GPL339
| | Sample_contact_name | Matthew ,J,Brooks
| | Sample_contact_email | brooksma@mail.nih.gov
| | Sample_contact_phone | 301-605-4063
| | Sample_contact_laboratory | NNRL
| | Sample_contact_department | NEI
| | Sample_contact_institute | NIH
| | Sample_contact_address | 6 Center Dr Bldg 6, Rm 336
| | Sample_contact_city | Bethesda
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20892
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1024nnn/GSM1024833/suppl/GSM1024833_P8-23.CEL.gz
| | Sample_series_id | GSE41821
| | Sample_data_row_count | 22690
| | |
|
GSM1024834 | GPL339 |
|
rd1_P8_rep4
|
rd1 mouse retina at age postnatal day 8
|
tissue: retina
age: postnatal day 8
genotype: rd1
|
|
| Sample_geo_accession | GSM1024834
| | Sample_status | Public on Nov 02 2012
| | Sample_submission_date | Oct 24 2012
| | Sample_last_update_date | Nov 02 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | Animals were grown to postnatal day 2, 4, 6 or 8 where eyes were enucleaded and retinas isolated. 8-14 retinas were combined per sample.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated from retinas using TRIzol reagent according to manufacture's protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip MOE430A arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetric GeneArray 2500 scanner.
| | Sample_data_processing | Expression scores were obtained using Robust Multichip Average to do background correction, quantile normalization and summarization. Normalized data was subjected to a two-stage analysis based on FDR-CI.
| | Sample_platform_id | GPL339
| | Sample_contact_name | Matthew ,J,Brooks
| | Sample_contact_email | brooksma@mail.nih.gov
| | Sample_contact_phone | 301-605-4063
| | Sample_contact_laboratory | NNRL
| | Sample_contact_department | NEI
| | Sample_contact_institute | NIH
| | Sample_contact_address | 6 Center Dr Bldg 6, Rm 336
| | Sample_contact_city | Bethesda
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20892
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1024nnn/GSM1024834/suppl/GSM1024834_P8-24.CEL.gz
| | Sample_series_id | GSE41821
| | Sample_data_row_count | 22690
| | |
|
| |
| |
Make groups for comparisons |
(2 groups will be compared at a time) |
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| Select GSMs and click on "Add groups" |
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