Search results for the GEO ID: GSE41856 |
(Click on the check boxes provided under "Select for analysis", to initiate grouping) |
(Once the selection is made, click on "Add groups" in "Make groups for comparison", to make a group. Scroll down) |
|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM1026370 | GPL570 |
|
MALC, sample 1
|
Human B lymphoid RL cell line (ATCC: CRL-2261), MALC, 10 days
|
genotype: t(14,18)+
|
|
Sample_geo_accession | GSM1026370
| Sample_status | Public on Oct 27 2012
| Sample_submission_date | Oct 26 2012
| Sample_last_update_date | Oct 27 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | No treatment
| Sample_growth_protocol_ch1 | Suspension cells were collected in exponential growth phase ; MALC were collected after 10 days culture,
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 200 ng total RNA , amplified and labeled following the one-cycle target labelling protocol (Affymetrix, Santa Clara, CA, USA).
| Sample_hyb_protocol | Labaled complementary RNA (cRNA) from these samples was then fragmented and hybridized to Affymetrix GeneChip arrays HG-U133 plus 2,0
| Sample_scan_protocol | the chips were then washed, scanned on the Affymetrix Fluidics Station 400 and analyzed with Genechip Operating Software
| Sample_data_processing | The data were analyzed with Microarray Suite version 5,0 (MAS 5,0) using Affymetrix default analysis settings and global scaling as normalization method
| Sample_platform_id | GPL570
| Sample_contact_name | Pauline,,GRAVELLE
| Sample_contact_email | pauline.gravelle@inserm.fr
| Sample_contact_institute | INSERM UMR1037
| Sample_contact_address | CHU Purpan, Pavillon Lefebvre
| Sample_contact_city | TOULOUSE
| Sample_contact_zip/postal_code | 31024
| Sample_contact_country | France
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1026nnn/GSM1026370/suppl/GSM1026370_MALC_1.CEL.gz
| Sample_series_id | GSE41851
| Sample_series_id | GSE41856
| Sample_data_row_count | 54675
| |
|
GSM1026371 | GPL570 |
|
MALC, sample 2
|
Human B lymphoid RL cell line (ATCC: CRL-2261), MALC, 10 days
|
genotype: t(14,18)+
|
|
Sample_geo_accession | GSM1026371
| Sample_status | Public on Oct 27 2012
| Sample_submission_date | Oct 26 2012
| Sample_last_update_date | Oct 27 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | No treatment
| Sample_growth_protocol_ch1 | Suspension cells were collected in exponential growth phase ; MALC were collected after 10 days culture,
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 200 ng total RNA , amplified and labeled following the one-cycle target labelling protocol (Affymetrix, Santa Clara, CA, USA).
| Sample_hyb_protocol | Labaled complementary RNA (cRNA) from these samples was then fragmented and hybridized to Affymetrix GeneChip arrays HG-U133 plus 2,0
| Sample_scan_protocol | the chips were then washed, scanned on the Affymetrix Fluidics Station 400 and analyzed with Genechip Operating Software
| Sample_data_processing | The data were analyzed with Microarray Suite version 5,0 (MAS 5,0) using Affymetrix default analysis settings and global scaling as normalization method
| Sample_platform_id | GPL570
| Sample_contact_name | Pauline,,GRAVELLE
| Sample_contact_email | pauline.gravelle@inserm.fr
| Sample_contact_institute | INSERM UMR1037
| Sample_contact_address | CHU Purpan, Pavillon Lefebvre
| Sample_contact_city | TOULOUSE
| Sample_contact_zip/postal_code | 31024
| Sample_contact_country | France
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1026nnn/GSM1026371/suppl/GSM1026371_MALC_2.CEL.gz
| Sample_series_id | GSE41851
| Sample_series_id | GSE41856
| Sample_data_row_count | 54675
| |
|
GSM1026372 | GPL570 |
|
MALC, sample 3
|
Human B lymphoid RL cell line (ATCC: CRL-2261), MALC, 10 days
|
genotype: t(14,18)+
|
|
Sample_geo_accession | GSM1026372
| Sample_status | Public on Oct 27 2012
| Sample_submission_date | Oct 26 2012
| Sample_last_update_date | Oct 27 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | No treatment
| Sample_growth_protocol_ch1 | Suspension cells were collected in exponential growth phase ; MALC were collected after 10 days culture,
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 200 ng total RNA , amplified and labeled following the one-cycle target labelling protocol (Affymetrix, Santa Clara, CA, USA).
| Sample_hyb_protocol | Labaled complementary RNA (cRNA) from these samples was then fragmented and hybridized to Affymetrix GeneChip arrays HG-U133 plus 2,0
| Sample_scan_protocol | the chips were then washed, scanned on the Affymetrix Fluidics Station 400 and analyzed with Genechip Operating Software
| Sample_data_processing | The data were analyzed with Microarray Suite version 5,0 (MAS 5,0) using Affymetrix default analysis settings and global scaling as normalization method
| Sample_platform_id | GPL570
| Sample_contact_name | Pauline,,GRAVELLE
| Sample_contact_email | pauline.gravelle@inserm.fr
| Sample_contact_institute | INSERM UMR1037
| Sample_contact_address | CHU Purpan, Pavillon Lefebvre
| Sample_contact_city | TOULOUSE
| Sample_contact_zip/postal_code | 31024
| Sample_contact_country | France
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1026nnn/GSM1026372/suppl/GSM1026372_MALC_3.CEL.gz
| Sample_series_id | GSE41851
| Sample_series_id | GSE41856
| Sample_data_row_count | 54675
| |
|
GSM1026373 | GPL570 |
|
Suspension cells, sample 1
|
Human B lymphoid RL cell line (ATCC: CRL-2261), exponential
|
genotype: t(14,18)+
|
|
Sample_geo_accession | GSM1026373
| Sample_status | Public on Oct 27 2012
| Sample_submission_date | Oct 26 2012
| Sample_last_update_date | Oct 27 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | No treatment
| Sample_growth_protocol_ch1 | Suspension cells were collected in exponential growth phase ; MALC were collected after 10 days culture,
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 200 ng total RNA , amplified and labeled following the one-cycle target labelling protocol (Affymetrix, Santa Clara, CA, USA).
| Sample_hyb_protocol | Labaled complementary RNA (cRNA) from these samples was then fragmented and hybridized to Affymetrix GeneChip arrays HG-U133 plus 2,0
| Sample_scan_protocol | the chips were then washed, scanned on the Affymetrix Fluidics Station 400 and analyzed with Genechip Operating Software
| Sample_data_processing | The data were analyzed with Microarray Suite version 5,0 (MAS 5,0) using Affymetrix default analysis settings and global scaling as normalization method
| Sample_platform_id | GPL570
| Sample_contact_name | Pauline,,GRAVELLE
| Sample_contact_email | pauline.gravelle@inserm.fr
| Sample_contact_institute | INSERM UMR1037
| Sample_contact_address | CHU Purpan, Pavillon Lefebvre
| Sample_contact_city | TOULOUSE
| Sample_contact_zip/postal_code | 31024
| Sample_contact_country | France
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1026nnn/GSM1026373/suppl/GSM1026373_2D_1.CEL.gz
| Sample_series_id | GSE41851
| Sample_series_id | GSE41856
| Sample_data_row_count | 54675
| |
|
GSM1026374 | GPL570 |
|
Suspension cells, sample 2
|
Human B lymphoid RL cell line (ATCC: CRL-2261), exponential
|
genotype: t(14,18)+
|
|
Sample_geo_accession | GSM1026374
| Sample_status | Public on Oct 27 2012
| Sample_submission_date | Oct 26 2012
| Sample_last_update_date | Oct 27 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | No treatment
| Sample_growth_protocol_ch1 | Suspension cells were collected in exponential growth phase ; MALC were collected after 10 days culture,
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 200 ng total RNA , amplified and labeled following the one-cycle target labelling protocol (Affymetrix, Santa Clara, CA, USA).
| Sample_hyb_protocol | Labaled complementary RNA (cRNA) from these samples was then fragmented and hybridized to Affymetrix GeneChip arrays HG-U133 plus 2,0
| Sample_scan_protocol | the chips were then washed, scanned on the Affymetrix Fluidics Station 400 and analyzed with Genechip Operating Software
| Sample_data_processing | The data were analyzed with Microarray Suite version 5,0 (MAS 5,0) using Affymetrix default analysis settings and global scaling as normalization method
| Sample_platform_id | GPL570
| Sample_contact_name | Pauline,,GRAVELLE
| Sample_contact_email | pauline.gravelle@inserm.fr
| Sample_contact_institute | INSERM UMR1037
| Sample_contact_address | CHU Purpan, Pavillon Lefebvre
| Sample_contact_city | TOULOUSE
| Sample_contact_zip/postal_code | 31024
| Sample_contact_country | France
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1026nnn/GSM1026374/suppl/GSM1026374_2D_2.CEL.gz
| Sample_series_id | GSE41851
| Sample_series_id | GSE41856
| Sample_data_row_count | 54675
| |
|
GSM1026375 | GPL570 |
|
Suspension cells, sample 3
|
Human B lymphoid RL cell line (ATCC: CRL-2261), exponential
|
genotype: t(14,18)+
|
|
Sample_geo_accession | GSM1026375
| Sample_status | Public on Oct 27 2012
| Sample_submission_date | Oct 26 2012
| Sample_last_update_date | Oct 27 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | No treatment
| Sample_growth_protocol_ch1 | Suspension cells were collected in exponential growth phase ; MALC were collected after 10 days culture,
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 200 ng total RNA , amplified and labeled following the one-cycle target labelling protocol (Affymetrix, Santa Clara, CA, USA).
| Sample_hyb_protocol | Labaled complementary RNA (cRNA) from these samples was then fragmented and hybridized to Affymetrix GeneChip arrays HG-U133 plus 2,0
| Sample_scan_protocol | the chips were then washed, scanned on the Affymetrix Fluidics Station 400 and analyzed with Genechip Operating Software
| Sample_data_processing | The data were analyzed with Microarray Suite version 5,0 (MAS 5,0) using Affymetrix default analysis settings and global scaling as normalization method
| Sample_platform_id | GPL570
| Sample_contact_name | Pauline,,GRAVELLE
| Sample_contact_email | pauline.gravelle@inserm.fr
| Sample_contact_institute | INSERM UMR1037
| Sample_contact_address | CHU Purpan, Pavillon Lefebvre
| Sample_contact_city | TOULOUSE
| Sample_contact_zip/postal_code | 31024
| Sample_contact_country | France
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1026nnn/GSM1026375/suppl/GSM1026375_2D_3.CEL.gz
| Sample_series_id | GSE41851
| Sample_series_id | GSE41856
| Sample_data_row_count | 54675
| |
|
GSM1026386 | GPL570 |
|
MALC, cycling, sample 1
|
Human B lymphoid RL cell line (ATCC: CRL-2261), MALC, 14 days, cycling cells
|
genotype: t(14,18)+
phenotype: Pyronin Y bright
|
|
Sample_geo_accession | GSM1026386
| Sample_status | Public on Oct 27 2012
| Sample_submission_date | Oct 26 2012
| Sample_last_update_date | Oct 27 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Pyronin Y staining for sorting
| Sample_growth_protocol_ch1 | MALC were cultured for 14 days, stained for pyronin Y and then quiescent and cycling cells of these MALC were sorted on a BD LSRII cytometer
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 30 ng total RNA , amplified and labeled following the one-cycle target labelling protocol (Affymetrix, Santa Clara, CA, USA).
| Sample_hyb_protocol | Labaled complementary RNA (cRNA) from these samples was then fragmented and hybridized to Affymetrix GeneChip arrays HG-U133 plus 2,0
| Sample_scan_protocol | the chips were then washed, scanned on the Affymetrix Fluidics Station 400 and analyzed with Genechip Operating Software
| Sample_data_processing | The data were analyzed with Microarray Suite version 5,0 (MAS 5,0) using Affymetrix default analysis settings and global scaling as normalization method
| Sample_platform_id | GPL570
| Sample_contact_name | Pauline,,GRAVELLE
| Sample_contact_email | pauline.gravelle@inserm.fr
| Sample_contact_institute | INSERM UMR1037
| Sample_contact_address | CHU Purpan, Pavillon Lefebvre
| Sample_contact_city | TOULOUSE
| Sample_contact_zip/postal_code | 31024
| Sample_contact_country | France
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1026nnn/GSM1026386/suppl/GSM1026386_MALC_cycling_1.CEL.gz
| Sample_series_id | GSE41855
| Sample_series_id | GSE41856
| Sample_data_row_count | 54675
| |
|
GSM1026387 | GPL570 |
|
MALC, quiescent, sample 1
|
Human B lymphoid RL cell line (ATCC: CRL-2261), MALC, 14 days, quiescent cells
|
genotype: t(14,18)+
phenotype: Pyronin Y dull
|
|
Sample_geo_accession | GSM1026387
| Sample_status | Public on Oct 27 2012
| Sample_submission_date | Oct 26 2012
| Sample_last_update_date | Oct 27 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Pyronin Y staining for sorting
| Sample_growth_protocol_ch1 | MALC were cultured for 14 days, stained for pyronin Y and then quiescent and cycling cells of these MALC were sorted on a BD LSRII cytometer
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 30 ng total RNA , amplified and labeled following the one-cycle target labelling protocol (Affymetrix, Santa Clara, CA, USA).
| Sample_hyb_protocol | Labaled complementary RNA (cRNA) from these samples was then fragmented and hybridized to Affymetrix GeneChip arrays HG-U133 plus 2,0
| Sample_scan_protocol | the chips were then washed, scanned on the Affymetrix Fluidics Station 400 and analyzed with Genechip Operating Software
| Sample_data_processing | The data were analyzed with Microarray Suite version 5,0 (MAS 5,0) using Affymetrix default analysis settings and global scaling as normalization method
| Sample_platform_id | GPL570
| Sample_contact_name | Pauline,,GRAVELLE
| Sample_contact_email | pauline.gravelle@inserm.fr
| Sample_contact_institute | INSERM UMR1037
| Sample_contact_address | CHU Purpan, Pavillon Lefebvre
| Sample_contact_city | TOULOUSE
| Sample_contact_zip/postal_code | 31024
| Sample_contact_country | France
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1026nnn/GSM1026387/suppl/GSM1026387_MALC_quiescent_1.CEL.gz
| Sample_series_id | GSE41855
| Sample_series_id | GSE41856
| Sample_data_row_count | 54675
| |
|
GSM1026388 | GPL570 |
|
MALC, cycling, sample 2
|
Human B lymphoid RL cell line (ATCC: CRL-2261), MALC, 14 days, cycling cells
|
genotype: t(14,18)+
phenotype: Pyronin Y bright
|
|
Sample_geo_accession | GSM1026388
| Sample_status | Public on Oct 27 2012
| Sample_submission_date | Oct 26 2012
| Sample_last_update_date | Oct 27 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Pyronin Y staining for sorting
| Sample_growth_protocol_ch1 | MALC were cultured for 14 days, stained for pyronin Y and then quiescent and cycling cells of these MALC were sorted on a BD LSRII cytometer
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 30 ng total RNA , amplified and labeled following the one-cycle target labelling protocol (Affymetrix, Santa Clara, CA, USA).
| Sample_hyb_protocol | Labaled complementary RNA (cRNA) from these samples was then fragmented and hybridized to Affymetrix GeneChip arrays HG-U133 plus 2,0
| Sample_scan_protocol | the chips were then washed, scanned on the Affymetrix Fluidics Station 400 and analyzed with Genechip Operating Software
| Sample_data_processing | The data were analyzed with Microarray Suite version 5,0 (MAS 5,0) using Affymetrix default analysis settings and global scaling as normalization method
| Sample_platform_id | GPL570
| Sample_contact_name | Pauline,,GRAVELLE
| Sample_contact_email | pauline.gravelle@inserm.fr
| Sample_contact_institute | INSERM UMR1037
| Sample_contact_address | CHU Purpan, Pavillon Lefebvre
| Sample_contact_city | TOULOUSE
| Sample_contact_zip/postal_code | 31024
| Sample_contact_country | France
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1026nnn/GSM1026388/suppl/GSM1026388_MALC_cycling_2.CEL.gz
| Sample_series_id | GSE41855
| Sample_series_id | GSE41856
| Sample_data_row_count | 54675
| |
|
GSM1026389 | GPL570 |
|
MALC, quiescent, sample 2
|
Human B lymphoid RL cell line (ATCC: CRL-2261), MALC, 14 days, quiescent cells
|
genotype: t(14,18)+
phenotype: Pyronin Y dull
|
|
Sample_geo_accession | GSM1026389
| Sample_status | Public on Oct 27 2012
| Sample_submission_date | Oct 26 2012
| Sample_last_update_date | Oct 27 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Pyronin Y staining for sorting
| Sample_growth_protocol_ch1 | MALC were cultured for 14 days, stained for pyronin Y and then quiescent and cycling cells of these MALC were sorted on a BD LSRII cytometer
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 30 ng total RNA , amplified and labeled following the one-cycle target labelling protocol (Affymetrix, Santa Clara, CA, USA).
| Sample_hyb_protocol | Labaled complementary RNA (cRNA) from these samples was then fragmented and hybridized to Affymetrix GeneChip arrays HG-U133 plus 2,0
| Sample_scan_protocol | the chips were then washed, scanned on the Affymetrix Fluidics Station 400 and analyzed with Genechip Operating Software
| Sample_data_processing | The data were analyzed with Microarray Suite version 5,0 (MAS 5,0) using Affymetrix default analysis settings and global scaling as normalization method
| Sample_platform_id | GPL570
| Sample_contact_name | Pauline,,GRAVELLE
| Sample_contact_email | pauline.gravelle@inserm.fr
| Sample_contact_institute | INSERM UMR1037
| Sample_contact_address | CHU Purpan, Pavillon Lefebvre
| Sample_contact_city | TOULOUSE
| Sample_contact_zip/postal_code | 31024
| Sample_contact_country | France
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1026nnn/GSM1026389/suppl/GSM1026389_MALC_quiescent_2.CEL.gz
| Sample_series_id | GSE41855
| Sample_series_id | GSE41856
| Sample_data_row_count | 54675
| |
|
GSM1026390 | GPL570 |
|
MALC, cycling, sample 3
|
Human B lymphoid RL cell line (ATCC: CRL-2261), MALC, 14 days, cycling cells
|
genotype: t(14,18)+
phenotype: Pyronin Y bright
|
|
Sample_geo_accession | GSM1026390
| Sample_status | Public on Oct 27 2012
| Sample_submission_date | Oct 26 2012
| Sample_last_update_date | Oct 27 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Pyronin Y staining for sorting
| Sample_growth_protocol_ch1 | MALC were cultured for 14 days, stained for pyronin Y and then quiescent and cycling cells of these MALC were sorted on a BD LSRII cytometer
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 30 ng total RNA , amplified and labeled following the one-cycle target labelling protocol (Affymetrix, Santa Clara, CA, USA).
| Sample_hyb_protocol | Labaled complementary RNA (cRNA) from these samples was then fragmented and hybridized to Affymetrix GeneChip arrays HG-U133 plus 2,0
| Sample_scan_protocol | the chips were then washed, scanned on the Affymetrix Fluidics Station 400 and analyzed with Genechip Operating Software
| Sample_data_processing | The data were analyzed with Microarray Suite version 5,0 (MAS 5,0) using Affymetrix default analysis settings and global scaling as normalization method
| Sample_platform_id | GPL570
| Sample_contact_name | Pauline,,GRAVELLE
| Sample_contact_email | pauline.gravelle@inserm.fr
| Sample_contact_institute | INSERM UMR1037
| Sample_contact_address | CHU Purpan, Pavillon Lefebvre
| Sample_contact_city | TOULOUSE
| Sample_contact_zip/postal_code | 31024
| Sample_contact_country | France
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1026nnn/GSM1026390/suppl/GSM1026390_MALC_cycling_3.CEL.gz
| Sample_series_id | GSE41855
| Sample_series_id | GSE41856
| Sample_data_row_count | 54675
| |
|
GSM1026391 | GPL570 |
|
MALC, quiescent, sample 3
|
Human B lymphoid RL cell line (ATCC: CRL-2261), MALC, 14 days, quiescent cells
|
genotype: t(14,18)+
phenotype: Pyronin Y dull
|
|
Sample_geo_accession | GSM1026391
| Sample_status | Public on Oct 27 2012
| Sample_submission_date | Oct 26 2012
| Sample_last_update_date | Oct 27 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Pyronin Y staining for sorting
| Sample_growth_protocol_ch1 | MALC were cultured for 14 days, stained for pyronin Y and then quiescent and cycling cells of these MALC were sorted on a BD LSRII cytometer
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 30 ng total RNA , amplified and labeled following the one-cycle target labelling protocol (Affymetrix, Santa Clara, CA, USA).
| Sample_hyb_protocol | Labaled complementary RNA (cRNA) from these samples was then fragmented and hybridized to Affymetrix GeneChip arrays HG-U133 plus 2,0
| Sample_scan_protocol | the chips were then washed, scanned on the Affymetrix Fluidics Station 400 and analyzed with Genechip Operating Software
| Sample_data_processing | The data were analyzed with Microarray Suite version 5,0 (MAS 5,0) using Affymetrix default analysis settings and global scaling as normalization method
| Sample_platform_id | GPL570
| Sample_contact_name | Pauline,,GRAVELLE
| Sample_contact_email | pauline.gravelle@inserm.fr
| Sample_contact_institute | INSERM UMR1037
| Sample_contact_address | CHU Purpan, Pavillon Lefebvre
| Sample_contact_city | TOULOUSE
| Sample_contact_zip/postal_code | 31024
| Sample_contact_country | France
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1026nnn/GSM1026391/suppl/GSM1026391_MALC_quiescent_3.CEL.gz
| Sample_series_id | GSE41855
| Sample_series_id | GSE41856
| Sample_data_row_count | 54675
| |
|
GSM1026392 | GPL570 |
|
MALC, cycling, sample 4
|
Human B lymphoid RL cell line (ATCC: CRL-2261), MALC, 14 days, cycling cells
|
genotype: t(14,18)+
phenotype: Pyronin Y bright
|
|
Sample_geo_accession | GSM1026392
| Sample_status | Public on Oct 27 2012
| Sample_submission_date | Oct 26 2012
| Sample_last_update_date | Oct 27 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Pyronin Y staining for sorting
| Sample_growth_protocol_ch1 | MALC were cultured for 14 days, stained for pyronin Y and then quiescent and cycling cells of these MALC were sorted on a BD LSRII cytometer
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 30 ng total RNA , amplified and labeled following the one-cycle target labelling protocol (Affymetrix, Santa Clara, CA, USA).
| Sample_hyb_protocol | Labaled complementary RNA (cRNA) from these samples was then fragmented and hybridized to Affymetrix GeneChip arrays HG-U133 plus 2,0
| Sample_scan_protocol | the chips were then washed, scanned on the Affymetrix Fluidics Station 400 and analyzed with Genechip Operating Software
| Sample_data_processing | The data were analyzed with Microarray Suite version 5,0 (MAS 5,0) using Affymetrix default analysis settings and global scaling as normalization method
| Sample_platform_id | GPL570
| Sample_contact_name | Pauline,,GRAVELLE
| Sample_contact_email | pauline.gravelle@inserm.fr
| Sample_contact_institute | INSERM UMR1037
| Sample_contact_address | CHU Purpan, Pavillon Lefebvre
| Sample_contact_city | TOULOUSE
| Sample_contact_zip/postal_code | 31024
| Sample_contact_country | France
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1026nnn/GSM1026392/suppl/GSM1026392_MALC_cycling_4.CEL.gz
| Sample_series_id | GSE41855
| Sample_series_id | GSE41856
| Sample_data_row_count | 54675
| |
|
GSM1026393 | GPL570 |
|
MALC, quiescent, sample 4
|
Human B lymphoid RL cell line (ATCC: CRL-2261), MALC, 14 days, quiescent cells
|
genotype: t(14,18)+
phenotype: Pyronin Y dull
|
|
Sample_geo_accession | GSM1026393
| Sample_status | Public on Oct 27 2012
| Sample_submission_date | Oct 26 2012
| Sample_last_update_date | Oct 27 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Pyronin Y staining for sorting
| Sample_growth_protocol_ch1 | MALC were cultured for 14 days, stained for pyronin Y and then quiescent and cycling cells of these MALC were sorted on a BD LSRII cytometer
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 30 ng total RNA , amplified and labeled following the one-cycle target labelling protocol (Affymetrix, Santa Clara, CA, USA).
| Sample_hyb_protocol | Labaled complementary RNA (cRNA) from these samples was then fragmented and hybridized to Affymetrix GeneChip arrays HG-U133 plus 2,0
| Sample_scan_protocol | the chips were then washed, scanned on the Affymetrix Fluidics Station 400 and analyzed with Genechip Operating Software
| Sample_data_processing | The data were analyzed with Microarray Suite version 5,0 (MAS 5,0) using Affymetrix default analysis settings and global scaling as normalization method
| Sample_platform_id | GPL570
| Sample_contact_name | Pauline,,GRAVELLE
| Sample_contact_email | pauline.gravelle@inserm.fr
| Sample_contact_institute | INSERM UMR1037
| Sample_contact_address | CHU Purpan, Pavillon Lefebvre
| Sample_contact_city | TOULOUSE
| Sample_contact_zip/postal_code | 31024
| Sample_contact_country | France
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1026nnn/GSM1026393/suppl/GSM1026393_MALC_quiescent_4.CEL.gz
| Sample_series_id | GSE41855
| Sample_series_id | GSE41856
| Sample_data_row_count | 54675
| |
|
|
|
Make groups for comparisons |
(2 groups will be compared at a time) |
|
Select GSMs and click on "Add groups" |
Enter the group name here: |
|
|
|