Search results for the GEO ID: GSE41907 |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM1027235 | GPL1261 |
|
Myoblast from wild type mice, biological replicate 1
|
myoblasts from wild type mice, female, #2
|
strain/background: C57BL/6
genotype/variation: wild type
gender: female
cell type: myoblasts
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myoblast_WT_F_2
Gene expression data from myoblasts of C57BL/6 wild type mice.
|
Sample_geo_accession | GSM1027235
| Sample_status | Public on Dec 01 2012
| Sample_submission_date | Oct 29 2012
| Sample_last_update_date | Dec 01 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_treatment_protocol_ch1 | None.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted using Trizol and RNase.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 400 ug total RNA (Affymetrix 2010).
| Sample_hyb_protocol | Following fragmentation, cRNA were hybridized on Affymetrix Mouse Genome Array 430 v2 according to the standard Affymetrix protocols.
| Sample_scan_protocol | GeneChips were scanned using GeneChip Scanner 3000 7G.
| Sample_data_processing | Raw data were normalized and summarized using R and the Bioconductor package plier.
| Sample_platform_id | GPL1261
| Sample_contact_name | Yunyu,,Zhang
| Sample_contact_email | yunyu.zhang@novartis.com
| Sample_contact_institute | Novartis Institute for Biomedical Research
| Sample_contact_address | 100 Technology Sq
| Sample_contact_city | Cambrdige
| Sample_contact_zip/postal_code | 02139
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1027nnn/GSM1027235/suppl/GSM1027235_myoblast_WT_F_2.cel.gz
| Sample_series_id | GSE41907
| Sample_data_row_count | 45101
| |
|
GSM1027236 | GPL1261 |
|
Myoblast from wild type mice, biological replicate 2
|
myoblasts from wild type mice, female, #4
|
strain/background: C57BL/6
genotype/variation: wild type
gender: female
cell type: myoblasts
|
myoblast_WT_F_4
Gene expression data from myoblasts of C57BL/6 wild type mice.
|
Sample_geo_accession | GSM1027236
| Sample_status | Public on Dec 01 2012
| Sample_submission_date | Oct 29 2012
| Sample_last_update_date | Dec 01 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_treatment_protocol_ch1 | None.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted using Trizol and RNase.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 400 ug total RNA (Affymetrix 2010).
| Sample_hyb_protocol | Following fragmentation, cRNA were hybridized on Affymetrix Mouse Genome Array 430 v2 according to the standard Affymetrix protocols.
| Sample_scan_protocol | GeneChips were scanned using GeneChip Scanner 3000 7G.
| Sample_data_processing | Raw data were normalized and summarized using R and the Bioconductor package plier.
| Sample_platform_id | GPL1261
| Sample_contact_name | Yunyu,,Zhang
| Sample_contact_email | yunyu.zhang@novartis.com
| Sample_contact_institute | Novartis Institute for Biomedical Research
| Sample_contact_address | 100 Technology Sq
| Sample_contact_city | Cambrdige
| Sample_contact_zip/postal_code | 02139
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1027nnn/GSM1027236/suppl/GSM1027236_myoblast_WT_F_4.cel.gz
| Sample_series_id | GSE41907
| Sample_data_row_count | 45101
| |
|
GSM1027237 | GPL1261 |
|
Myoblast from wild type mice, biological replicate 3
|
myoblasts from wild type mice, female, #6
|
strain/background: C57BL/6
genotype/variation: wild type
gender: female
cell type: myoblasts
|
myoblast_WT_F_6
Gene expression data from myoblasts of C57BL/6 wild type mice.
|
Sample_geo_accession | GSM1027237
| Sample_status | Public on Dec 01 2012
| Sample_submission_date | Oct 29 2012
| Sample_last_update_date | Dec 01 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_treatment_protocol_ch1 | None.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted using Trizol and RNase.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 400 ug total RNA (Affymetrix 2010).
| Sample_hyb_protocol | Following fragmentation, cRNA were hybridized on Affymetrix Mouse Genome Array 430 v2 according to the standard Affymetrix protocols.
| Sample_scan_protocol | GeneChips were scanned using GeneChip Scanner 3000 7G.
| Sample_data_processing | Raw data were normalized and summarized using R and the Bioconductor package plier.
| Sample_platform_id | GPL1261
| Sample_contact_name | Yunyu,,Zhang
| Sample_contact_email | yunyu.zhang@novartis.com
| Sample_contact_institute | Novartis Institute for Biomedical Research
| Sample_contact_address | 100 Technology Sq
| Sample_contact_city | Cambrdige
| Sample_contact_zip/postal_code | 02139
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1027nnn/GSM1027237/suppl/GSM1027237_myoblast_WT_F_6.cel.gz
| Sample_series_id | GSE41907
| Sample_data_row_count | 45101
| |
|
GSM1027238 | GPL1261 |
|
Myoblast from HMGA2 KO mice, biological replicate 1
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myoblasts from HMGA2 -/- mice, male, #2
|
strain/background: C57BL/6
genotype/variation: HMGA2 -/-
gender: male
cell type: myoblasts
|
myoblast_KO_M_2
Gene expression data from myoblasts of C57BL/6 HMGA2 -/- mice.
|
Sample_geo_accession | GSM1027238
| Sample_status | Public on Dec 01 2012
| Sample_submission_date | Oct 29 2012
| Sample_last_update_date | Dec 01 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_treatment_protocol_ch1 | None.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted using Trizol and RNase.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 400 ug total RNA (Affymetrix 2010).
| Sample_hyb_protocol | Following fragmentation, cRNA were hybridized on Affymetrix Mouse Genome Array 430 v2 according to the standard Affymetrix protocols.
| Sample_scan_protocol | GeneChips were scanned using GeneChip Scanner 3000 7G.
| Sample_data_processing | Raw data were normalized and summarized using R and the Bioconductor package plier.
| Sample_platform_id | GPL1261
| Sample_contact_name | Yunyu,,Zhang
| Sample_contact_email | yunyu.zhang@novartis.com
| Sample_contact_institute | Novartis Institute for Biomedical Research
| Sample_contact_address | 100 Technology Sq
| Sample_contact_city | Cambrdige
| Sample_contact_zip/postal_code | 02139
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1027nnn/GSM1027238/suppl/GSM1027238_myoblast_KO_M_2.cel.gz
| Sample_series_id | GSE41907
| Sample_data_row_count | 45101
| |
|
GSM1027239 | GPL1261 |
|
Myoblast from HMGA2 KO mice, biological replicate 2
|
myoblasts from HMGA2 -/- mice, female, #3
|
strain/background: C57BL/6
genotype/variation: HMGA2 -/-
gender: female
cell type: myoblasts
|
myoblast_KO_F_4
Gene expression data from myoblasts of C57BL/6 HMGA2 -/- mice.
|
Sample_geo_accession | GSM1027239
| Sample_status | Public on Dec 01 2012
| Sample_submission_date | Oct 29 2012
| Sample_last_update_date | Dec 01 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_treatment_protocol_ch1 | None.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted using Trizol and RNase.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 400 ug total RNA (Affymetrix 2010).
| Sample_hyb_protocol | Following fragmentation, cRNA were hybridized on Affymetrix Mouse Genome Array 430 v2 according to the standard Affymetrix protocols.
| Sample_scan_protocol | GeneChips were scanned using GeneChip Scanner 3000 7G.
| Sample_data_processing | Raw data were normalized and summarized using R and the Bioconductor package plier.
| Sample_platform_id | GPL1261
| Sample_contact_name | Yunyu,,Zhang
| Sample_contact_email | yunyu.zhang@novartis.com
| Sample_contact_institute | Novartis Institute for Biomedical Research
| Sample_contact_address | 100 Technology Sq
| Sample_contact_city | Cambrdige
| Sample_contact_zip/postal_code | 02139
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1027nnn/GSM1027239/suppl/GSM1027239_myoblast_KO_F_4.cel.gz
| Sample_series_id | GSE41907
| Sample_data_row_count | 45101
| |
|
GSM1027240 | GPL1261 |
|
Myoblast from HMGA2 KO mice, biological replicate 3
|
myoblasts from HMGA2 -/- mice, male, #5
|
strain/background: C57BL/6
genotype/variation: HMGA2 -/-
gender: male
cell type: myoblasts
|
myoblast_KO_M_5
Gene expression data from myoblasts of C57BL/6 HMGA2 -/- mice.
|
Sample_geo_accession | GSM1027240
| Sample_status | Public on Dec 01 2012
| Sample_submission_date | Oct 29 2012
| Sample_last_update_date | Dec 01 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_treatment_protocol_ch1 | None.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted using Trizol and RNase.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 400 ug total RNA (Affymetrix 2010).
| Sample_hyb_protocol | Following fragmentation, cRNA were hybridized on Affymetrix Mouse Genome Array 430 v2 according to the standard Affymetrix protocols.
| Sample_scan_protocol | GeneChips were scanned using GeneChip Scanner 3000 7G.
| Sample_data_processing | Raw data were normalized and summarized using R and the Bioconductor package plier.
| Sample_platform_id | GPL1261
| Sample_contact_name | Yunyu,,Zhang
| Sample_contact_email | yunyu.zhang@novartis.com
| Sample_contact_institute | Novartis Institute for Biomedical Research
| Sample_contact_address | 100 Technology Sq
| Sample_contact_city | Cambrdige
| Sample_contact_zip/postal_code | 02139
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1027nnn/GSM1027240/suppl/GSM1027240_myoblast_KO_M_5.cel.gz
| Sample_series_id | GSE41907
| Sample_data_row_count | 45101
| |
|
GSM1027241 | GPL1261 |
|
Myoblast from HMGA2 KO mice, biological replicate 4
|
myoblasts from HMGA2 -/- mice, female, #6
|
strain/background: C57BL/6
genotype/variation: HMGA2 -/-
gender: female
cell type: myoblasts
|
myoblast_KO_F_6
Gene expression data from myoblasts of C57BL/6 HMGA2 -/- mice.
|
Sample_geo_accession | GSM1027241
| Sample_status | Public on Dec 01 2012
| Sample_submission_date | Oct 29 2012
| Sample_last_update_date | Dec 01 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_treatment_protocol_ch1 | None.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted using Trizol and RNase.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 400 ug total RNA (Affymetrix 2010).
| Sample_hyb_protocol | Following fragmentation, cRNA were hybridized on Affymetrix Mouse Genome Array 430 v2 according to the standard Affymetrix protocols.
| Sample_scan_protocol | GeneChips were scanned using GeneChip Scanner 3000 7G.
| Sample_data_processing | Raw data were normalized and summarized using R and the Bioconductor package plier.
| Sample_platform_id | GPL1261
| Sample_contact_name | Yunyu,,Zhang
| Sample_contact_email | yunyu.zhang@novartis.com
| Sample_contact_institute | Novartis Institute for Biomedical Research
| Sample_contact_address | 100 Technology Sq
| Sample_contact_city | Cambrdige
| Sample_contact_zip/postal_code | 02139
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1027nnn/GSM1027241/suppl/GSM1027241_myoblast_KO_F_6.cel.gz
| Sample_series_id | GSE41907
| Sample_data_row_count | 45101
| |
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