Search results for the GEO ID: GSE41925  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM1027576 | GPL1261 |
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8-cell staged mouse whole embryos rep 1
|
Embryo
|
strain: B6D2F1
developmental stage: 8-cell
age: E2.5 (66 hours post hCG)
tissue: Whole embryo
genotype: wild-type
|
1-cell zygote embryos were collected and in vitro cultured in KSOM medium
|
| Sample_geo_accession | GSM1027576
| | Sample_status | Public on Dec 01 2012
| | Sample_submission_date | Oct 31 2012
| | Sample_last_update_date | Dec 01 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Not applicable
| | Sample_growth_protocol_ch1 | All mouse embryos were collected and washed in M2 medium and incubated in modified KSOM under mineral oil in a humidfied atmosphere of 5% CO2, 5% O2, 90% N2 atmosphere at 37°C until use
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated uisng the PicoPure RNA isolation kit (Arcturus). Isolated RNA was subsequently amplified using GeneChip® Eukaryotic Small Sample Target Labeling Assay Version II
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared using ENZO BioArray HighYied RNA transcript labeling Kit according to the manufacturer's instructions.
| | Sample_hyb_protocol | aRNA was hybridized for 16 hr on Affymetrix mouse 430 v2.0 microarrays. GeneChips were washed and stained using an Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | Default Affymetrix GCOS settings for GeneChip 3000 7G scanner
| | Sample_data_processing = Microarray Analysis Suite 5.0 (MAS, Affymetrix) was used to quantify microarray signals with default analysis parameters and global scaling to target MEAN | 150
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Jason,,Knott
| | Sample_contact_email | knottj@msu.edu
| | Sample_contact_department | Animal Science
| | Sample_contact_institute | Michigan State University
| | Sample_contact_address | 1230 H Anthony Hall
| | Sample_contact_city | East Lansing
| | Sample_contact_zip/postal_code | 48824
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1027nnn/GSM1027576/suppl/GSM1027576_wild-type_8_cell_1.CEL.gz
| | Sample_series_id | GSE41925
| | Sample_data_row_count | 45101
| | |
|
GSM1027577 | GPL1261 |
|
8-cell staged mouse whole embryos rep 2
|
Embryo
|
strain: B6D2F1
developmental stage: 8-cell
age: E2.5 (66 hours post hCG)
tissue: Whole embryo
genotype: wild-type
|
1-cell zygote embryos were collected and in vitro cultured in KSOM medium
|
| Sample_geo_accession | GSM1027577
| | Sample_status | Public on Dec 01 2012
| | Sample_submission_date | Oct 31 2012
| | Sample_last_update_date | Dec 01 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Not applicable
| | Sample_growth_protocol_ch1 | All mouse embryos were collected and washed in M2 medium and incubated in modified KSOM under mineral oil in a humidfied atmosphere of 5% CO2, 5% O2, 90% N2 atmosphere at 37°C until use
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated uisng the PicoPure RNA isolation kit (Arcturus). Isolated RNA was subsequently amplified using GeneChip® Eukaryotic Small Sample Target Labeling Assay Version II
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared using ENZO BioArray HighYied RNA transcript labeling Kit according to the manufacturer's instructions.
| | Sample_hyb_protocol | aRNA was hybridized for 16 hr on Affymetrix mouse 430 v2.0 microarrays. GeneChips were washed and stained using an Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | Default Affymetrix GCOS settings for GeneChip 3000 7G scanner
| | Sample_data_processing = Microarray Analysis Suite 5.0 (MAS, Affymetrix) was used to quantify microarray signals with default analysis parameters and global scaling to target MEAN | 150
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Jason,,Knott
| | Sample_contact_email | knottj@msu.edu
| | Sample_contact_department | Animal Science
| | Sample_contact_institute | Michigan State University
| | Sample_contact_address | 1230 H Anthony Hall
| | Sample_contact_city | East Lansing
| | Sample_contact_zip/postal_code | 48824
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1027nnn/GSM1027577/suppl/GSM1027577_wild-type_8_cell_2.CEL.gz
| | Sample_series_id | GSE41925
| | Sample_data_row_count | 45101
| | |
|
GSM1027578 | GPL1261 |
|
8-cell staged mouse whole embryos rep 3
|
Embryo
|
strain: B6D2F1
developmental stage: 8-cell
age: E2.5 (66 hours post hCG)
tissue: Whole embryo
genotype: wild-type
|
1-cell zygote embryos were collected and in vitro cultured in KSOM medium
|
| Sample_geo_accession | GSM1027578
| | Sample_status | Public on Dec 01 2012
| | Sample_submission_date | Oct 31 2012
| | Sample_last_update_date | Dec 01 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Not applicable
| | Sample_growth_protocol_ch1 | All mouse embryos were collected and washed in M2 medium and incubated in modified KSOM under mineral oil in a humidfied atmosphere of 5% CO2, 5% O2, 90% N2 atmosphere at 37°C until use
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated uisng the PicoPure RNA isolation kit (Arcturus). Isolated RNA was subsequently amplified using GeneChip® Eukaryotic Small Sample Target Labeling Assay Version II
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared using ENZO BioArray HighYied RNA transcript labeling Kit according to the manufacturer's instructions.
| | Sample_hyb_protocol | aRNA was hybridized for 16 hr on Affymetrix mouse 430 v2.0 microarrays. GeneChips were washed and stained using an Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | Default Affymetrix GCOS settings for GeneChip 3000 7G scanner
| | Sample_data_processing = Microarray Analysis Suite 5.0 (MAS, Affymetrix) was used to quantify microarray signals with default analysis parameters and global scaling to target MEAN | 150
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Jason,,Knott
| | Sample_contact_email | knottj@msu.edu
| | Sample_contact_department | Animal Science
| | Sample_contact_institute | Michigan State University
| | Sample_contact_address | 1230 H Anthony Hall
| | Sample_contact_city | East Lansing
| | Sample_contact_zip/postal_code | 48824
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1027nnn/GSM1027578/suppl/GSM1027578_wild-type_8_cell_3.CEL.gz
| | Sample_series_id | GSE41925
| | Sample_data_row_count | 45101
| | |
|
GSM1027579 | GPL1261 |
|
8-cell staged mouse whole embryos rep 4
|
Embryo
|
strain: B6D2F1
developmental stage: 8-cell
age: E2.5 (66 hours post hCG)
tissue: Whole embryo
genotype: wild-type
|
1-cell zygote embryos were collected and in vitro cultured in KSOM medium
|
| Sample_geo_accession | GSM1027579
| | Sample_status | Public on Dec 01 2012
| | Sample_submission_date | Oct 31 2012
| | Sample_last_update_date | Dec 01 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Not applicable
| | Sample_growth_protocol_ch1 | All mouse embryos were collected and washed in M2 medium and incubated in modified KSOM under mineral oil in a humidfied atmosphere of 5% CO2, 5% O2, 90% N2 atmosphere at 37°C until use
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated uisng the PicoPure RNA isolation kit (Arcturus). Isolated RNA was subsequently amplified using GeneChip® Eukaryotic Small Sample Target Labeling Assay Version II
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared using ENZO BioArray HighYied RNA transcript labeling Kit according to the manufacturer's instructions.
| | Sample_hyb_protocol | aRNA was hybridized for 16 hr on Affymetrix mouse 430 v2.0 microarrays. GeneChips were washed and stained using an Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | Default Affymetrix GCOS settings for GeneChip 3000 7G scanner
| | Sample_data_processing = Microarray Analysis Suite 5.0 (MAS, Affymetrix) was used to quantify microarray signals with default analysis parameters and global scaling to target MEAN | 150
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Jason,,Knott
| | Sample_contact_email | knottj@msu.edu
| | Sample_contact_department | Animal Science
| | Sample_contact_institute | Michigan State University
| | Sample_contact_address | 1230 H Anthony Hall
| | Sample_contact_city | East Lansing
| | Sample_contact_zip/postal_code | 48824
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1027nnn/GSM1027579/suppl/GSM1027579_wild-type_8_cell_4.CEL.gz
| | Sample_series_id | GSE41925
| | Sample_data_row_count | 45101
| | |
|
GSM1027580 | GPL1261 |
|
Blastocyst staged mouse whole embryos rep 1
|
Embryo
|
strain: B6D2F1
developmental stage: Blastocyst
age: E4.5 (120 hours post hCG)
tissue: Whole embryo
genotype: wild-type
|
1-cell zygote embryos were collected and in vitro cultured in KSOM medium
|
| Sample_geo_accession | GSM1027580
| | Sample_status | Public on Dec 01 2012
| | Sample_submission_date | Oct 31 2012
| | Sample_last_update_date | Dec 01 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Not applicable
| | Sample_growth_protocol_ch1 | All mouse embryos were collected and washed in M2 medium and incubated in modified KSOM under mineral oil in a humidfied atmosphere of 5% CO2, 5% O2, 90% N2 atmosphere at 37°C until use
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated uisng the PicoPure RNA isolation kit (Arcturus). Isolated RNA was subsequently amplified using GeneChip® Eukaryotic Small Sample Target Labeling Assay Version II
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared using ENZO BioArray HighYied RNA transcript labeling Kit according to the manufacturer's instructions.
| | Sample_hyb_protocol | aRNA was hybridized for 16 hr on Affymetrix mouse 430 v2.0 microarrays. GeneChips were washed and stained using an Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | Default Affymetrix GCOS settings for GeneChip 3000 7G scanner
| | Sample_data_processing = Microarray Analysis Suite 5.0 (MAS, Affymetrix) was used to quantify microarray signals with default analysis parameters and global scaling to target MEAN | 150
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Jason,,Knott
| | Sample_contact_email | knottj@msu.edu
| | Sample_contact_department | Animal Science
| | Sample_contact_institute | Michigan State University
| | Sample_contact_address | 1230 H Anthony Hall
| | Sample_contact_city | East Lansing
| | Sample_contact_zip/postal_code | 48824
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1027nnn/GSM1027580/suppl/GSM1027580_wild-type_blastocyst_1.CEL.gz
| | Sample_series_id | GSE41925
| | Sample_data_row_count | 45101
| | |
|
GSM1027581 | GPL1261 |
|
Blastocyst staged mouse whole embryos rep 2
|
Embryo
|
strain: B6D2F1
developmental stage: Blastocyst
age: E4.5 (120 hours post hCG)
tissue: Whole embryo
genotype: wild-type
|
1-cell zygote embryos were collected and in vitro cultured in KSOM medium
|
| Sample_geo_accession | GSM1027581
| | Sample_status | Public on Dec 01 2012
| | Sample_submission_date | Oct 31 2012
| | Sample_last_update_date | Dec 01 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Not applicable
| | Sample_growth_protocol_ch1 | All mouse embryos were collected and washed in M2 medium and incubated in modified KSOM under mineral oil in a humidfied atmosphere of 5% CO2, 5% O2, 90% N2 atmosphere at 37°C until use
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated uisng the PicoPure RNA isolation kit (Arcturus). Isolated RNA was subsequently amplified using GeneChip® Eukaryotic Small Sample Target Labeling Assay Version II
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared using ENZO BioArray HighYied RNA transcript labeling Kit according to the manufacturer's instructions.
| | Sample_hyb_protocol | aRNA was hybridized for 16 hr on Affymetrix mouse 430 v2.0 microarrays. GeneChips were washed and stained using an Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | Default Affymetrix GCOS settings for GeneChip 3000 7G scanner
| | Sample_data_processing = Microarray Analysis Suite 5.0 (MAS, Affymetrix) was used to quantify microarray signals with default analysis parameters and global scaling to target MEAN | 150
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Jason,,Knott
| | Sample_contact_email | knottj@msu.edu
| | Sample_contact_department | Animal Science
| | Sample_contact_institute | Michigan State University
| | Sample_contact_address | 1230 H Anthony Hall
| | Sample_contact_city | East Lansing
| | Sample_contact_zip/postal_code | 48824
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1027nnn/GSM1027581/suppl/GSM1027581_wild-type_blastocyst_2.CEL.gz
| | Sample_series_id | GSE41925
| | Sample_data_row_count | 45101
| | |
|
GSM1027582 | GPL1261 |
|
Blastocyst staged mouse whole embryos rep 3
|
Embryo
|
strain: B6D2F1
developmental stage: Blastocyst
age: E4.5 (120 hours post hCG)
tissue: Whole embryo
genotype: wild-type
|
1-cell zygote embryos were collected and in vitro cultured in KSOM medium
|
| Sample_geo_accession | GSM1027582
| | Sample_status | Public on Dec 01 2012
| | Sample_submission_date | Oct 31 2012
| | Sample_last_update_date | Dec 01 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Not applicable
| | Sample_growth_protocol_ch1 | All mouse embryos were collected and washed in M2 medium and incubated in modified KSOM under mineral oil in a humidfied atmosphere of 5% CO2, 5% O2, 90% N2 atmosphere at 37°C until use
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated uisng the PicoPure RNA isolation kit (Arcturus). Isolated RNA was subsequently amplified using GeneChip® Eukaryotic Small Sample Target Labeling Assay Version II
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared using ENZO BioArray HighYied RNA transcript labeling Kit according to the manufacturer's instructions.
| | Sample_hyb_protocol | aRNA was hybridized for 16 hr on Affymetrix mouse 430 v2.0 microarrays. GeneChips were washed and stained using an Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | Default Affymetrix GCOS settings for GeneChip 3000 7G scanner
| | Sample_data_processing = Microarray Analysis Suite 5.0 (MAS, Affymetrix) was used to quantify microarray signals with default analysis parameters and global scaling to target MEAN | 150
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Jason,,Knott
| | Sample_contact_email | knottj@msu.edu
| | Sample_contact_department | Animal Science
| | Sample_contact_institute | Michigan State University
| | Sample_contact_address | 1230 H Anthony Hall
| | Sample_contact_city | East Lansing
| | Sample_contact_zip/postal_code | 48824
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1027nnn/GSM1027582/suppl/GSM1027582_wild-type_blastocyst_3.CEL.gz
| | Sample_series_id | GSE41925
| | Sample_data_row_count | 45101
| | |
|
GSM1027583 | GPL1261 |
|
Blastocyst staged mouse whole embryos rep 4
|
Embryo
|
strain: B6D2F1
developmental stage: Blastocyst
age: E4.5 (120 hours post hCG)
tissue: Whole embryo
genotype: wild-type
|
1-cell zygote embryos were collected and in vitro cultured in KSOM medium
|
| Sample_geo_accession | GSM1027583
| | Sample_status | Public on Dec 01 2012
| | Sample_submission_date | Oct 31 2012
| | Sample_last_update_date | Dec 01 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Not applicable
| | Sample_growth_protocol_ch1 | All mouse embryos were collected and washed in M2 medium and incubated in modified KSOM under mineral oil in a humidfied atmosphere of 5% CO2, 5% O2, 90% N2 atmosphere at 37°C until use
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated uisng the PicoPure RNA isolation kit (Arcturus). Isolated RNA was subsequently amplified using GeneChip® Eukaryotic Small Sample Target Labeling Assay Version II
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared using ENZO BioArray HighYied RNA transcript labeling Kit according to the manufacturer's instructions.
| | Sample_hyb_protocol | aRNA was hybridized for 16 hr on Affymetrix mouse 430 v2.0 microarrays. GeneChips were washed and stained using an Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | Default Affymetrix GCOS settings for GeneChip 3000 7G scanner
| | Sample_data_processing = Microarray Analysis Suite 5.0 (MAS, Affymetrix) was used to quantify microarray signals with default analysis parameters and global scaling to target MEAN | 150
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Jason,,Knott
| | Sample_contact_email | knottj@msu.edu
| | Sample_contact_department | Animal Science
| | Sample_contact_institute | Michigan State University
| | Sample_contact_address | 1230 H Anthony Hall
| | Sample_contact_city | East Lansing
| | Sample_contact_zip/postal_code | 48824
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1027nnn/GSM1027583/suppl/GSM1027583_wild-type_blastocyst_4.CEL.gz
| | Sample_series_id | GSE41925
| | Sample_data_row_count | 45101
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