Search results for the GEO ID: GSE41942  |
(Click on the check boxes provided under "Select for analysis", to initiate grouping) |
(Once the selection is made, click on "Add groups" in "Make groups for comparison", to make a group. Scroll down) |
|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM1027939 | GPL1261 |
|
32D-EV IL-3 #1
|
Myeloid murine cell line, 32D
|
cell line: 32D
expression construct: A1-EV
|
|
| Sample_geo_accession | GSM1027939
| | Sample_status | Public on Nov 01 2012
| | Sample_submission_date | Oct 31 2012
| | Sample_last_update_date | Nov 01 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Not applicable
| | Sample_growth_protocol_ch1 | Cells were grown with density between 1E5/ml and 1E6/ml in RPMI supplemented with 10% FCS, Pen/Strep (100 IU/ml; 100 µg/ml) and murine IL-3 (10 ng/ml).
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse Genome 430 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Su Ming,,Sun
| | Sample_contact_email | s.sun@erasmusmc.nl
| | Sample_contact_phone | +31-107043836
| | Sample_contact_department | Hematology
| | Sample_contact_institute | Erasmus University Medical Center
| | Sample_contact_address | Dr. Molewaterplein 50
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1027nnn/GSM1027939/suppl/GSM1027939_32D_EV_1.CEL.gz
| | Sample_series_id | GSE41942
| | Sample_data_row_count | 45101
| | |
|
GSM1027940 | GPL1261 |
|
32D-EV IL-3 #2
|
Myeloid murine cell line, 32D
|
cell line: 32D
expression construct: A1-EV
|
|
| Sample_geo_accession | GSM1027940
| | Sample_status | Public on Nov 01 2012
| | Sample_submission_date | Oct 31 2012
| | Sample_last_update_date | Nov 01 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Not applicable
| | Sample_growth_protocol_ch1 | Cells were grown with density between 1E5/ml and 1E6/ml in RPMI supplemented with 10% FCS, Pen/Strep (100 IU/ml; 100 µg/ml) and murine IL-3 (10 ng/ml).
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse Genome 430 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Su Ming,,Sun
| | Sample_contact_email | s.sun@erasmusmc.nl
| | Sample_contact_phone | +31-107043836
| | Sample_contact_department | Hematology
| | Sample_contact_institute | Erasmus University Medical Center
| | Sample_contact_address | Dr. Molewaterplein 50
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1027nnn/GSM1027940/suppl/GSM1027940_32D_EV_2.CEL.gz
| | Sample_series_id | GSE41942
| | Sample_data_row_count | 45101
| | |
|
GSM1027941 | GPL1261 |
|
32D-EV IL-3 #3
|
Myeloid murine cell line, 32D
|
cell line: 32D
expression construct: A1-EV
|
|
| Sample_geo_accession | GSM1027941
| | Sample_status | Public on Nov 01 2012
| | Sample_submission_date | Oct 31 2012
| | Sample_last_update_date | Nov 01 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Not applicable
| | Sample_growth_protocol_ch1 | Cells were grown with density between 1E5/ml and 1E6/ml in RPMI supplemented with 10% FCS, Pen/Strep (100 IU/ml; 100 µg/ml) and murine IL-3 (10 ng/ml).
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse Genome 430 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Su Ming,,Sun
| | Sample_contact_email | s.sun@erasmusmc.nl
| | Sample_contact_phone | +31-107043836
| | Sample_contact_department | Hematology
| | Sample_contact_institute | Erasmus University Medical Center
| | Sample_contact_address | Dr. Molewaterplein 50
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1027nnn/GSM1027941/suppl/GSM1027941_32D_EV_3.CEL.gz
| | Sample_series_id | GSE41942
| | Sample_data_row_count | 45101
| | |
|
GSM1027942 | GPL1261 |
|
32D-miR-9/9* IL-3 #1
|
Myeloid murine cell line, 32D
|
cell line: 32D
expression construct: C2-MiR-9
|
|
| Sample_geo_accession | GSM1027942
| | Sample_status | Public on Nov 01 2012
| | Sample_submission_date | Oct 31 2012
| | Sample_last_update_date | Nov 01 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Not applicable
| | Sample_growth_protocol_ch1 | Cells were grown with density between 1E5/ml and 1E6/ml in RPMI supplemented with 10% FCS, Pen/Strep (100 IU/ml; 100 µg/ml) and murine IL-3 (10 ng/ml).
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse Genome 430 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Su Ming,,Sun
| | Sample_contact_email | s.sun@erasmusmc.nl
| | Sample_contact_phone | +31-107043836
| | Sample_contact_department | Hematology
| | Sample_contact_institute | Erasmus University Medical Center
| | Sample_contact_address | Dr. Molewaterplein 50
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1027nnn/GSM1027942/suppl/GSM1027942_32D_miR-9_1.CEL.gz
| | Sample_series_id | GSE41942
| | Sample_data_row_count | 45101
| | |
|
GSM1027943 | GPL1261 |
|
32D-miR-9/9* IL-3 #2
|
Myeloid murine cell line, 32D
|
cell line: 32D
expression construct: C2-MiR-9
|
|
| Sample_geo_accession | GSM1027943
| | Sample_status | Public on Nov 01 2012
| | Sample_submission_date | Oct 31 2012
| | Sample_last_update_date | Nov 01 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Not applicable
| | Sample_growth_protocol_ch1 | Cells were grown with density between 1E5/ml and 1E6/ml in RPMI supplemented with 10% FCS, Pen/Strep (100 IU/ml; 100 µg/ml) and murine IL-3 (10 ng/ml).
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse Genome 430 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Su Ming,,Sun
| | Sample_contact_email | s.sun@erasmusmc.nl
| | Sample_contact_phone | +31-107043836
| | Sample_contact_department | Hematology
| | Sample_contact_institute | Erasmus University Medical Center
| | Sample_contact_address | Dr. Molewaterplein 50
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1027nnn/GSM1027943/suppl/GSM1027943_32D_miR-9_2.CEL.gz
| | Sample_series_id | GSE41942
| | Sample_data_row_count | 45101
| | |
|
GSM1027944 | GPL1261 |
|
32D-miR-9/9* IL-3 #3
|
Myeloid murine cell line, 32D
|
cell line: 32D
expression construct: C2-MiR-9
|
|
| Sample_geo_accession | GSM1027944
| | Sample_status | Public on Nov 01 2012
| | Sample_submission_date | Oct 31 2012
| | Sample_last_update_date | Nov 01 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Not applicable
| | Sample_growth_protocol_ch1 | Cells were grown with density between 1E5/ml and 1E6/ml in RPMI supplemented with 10% FCS, Pen/Strep (100 IU/ml; 100 µg/ml) and murine IL-3 (10 ng/ml).
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse Genome 430 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Su Ming,,Sun
| | Sample_contact_email | s.sun@erasmusmc.nl
| | Sample_contact_phone | +31-107043836
| | Sample_contact_department | Hematology
| | Sample_contact_institute | Erasmus University Medical Center
| | Sample_contact_address | Dr. Molewaterplein 50
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1027nnn/GSM1027944/suppl/GSM1027944_32D_miR-9_3.CEL.gz
| | Sample_series_id | GSE41942
| | Sample_data_row_count | 45101
| | |
|
| |
| |
Make groups for comparisons |
(2 groups will be compared at a time) |
|
| Select GSMs and click on "Add groups" |
Enter the group name here: |
|
|
|
