Search results for the GEO ID: GSE42008  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM1030606 | GPL1261 |
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ES cells NcGFP ki/+ rep 1
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embryonic stem cells
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genotype/variation: NcGFP ki/+
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| Sample_geo_accession | GSM1030606
| | Sample_status | Public on Jul 01 2013
| | Sample_submission_date | Nov 02 2012
| | Sample_last_update_date | Jul 01 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | ES cells were grown on diluted EMFI plate prior to isolation in DMEM/15% FCS/10 U/ml Pen/Strep, 0.1 mM NEAA, 2 mM L-glutamin, 0.15 mM β-mercaptoethanol, 500 U Lif
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction followed by a Qiagen Rneasy Kit purification
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | standard Affymetrix protocol
| | Sample_hyb_protocol | standard Affymetrix protocol
| | Sample_scan_protocol | standard Affymetrix protocol
| | Sample_data_processing | Data analysis was performed using the R/Bioconductor Limma software. Quality of the data set was controlled by the simpleaffy package and normalized by quantile normalization with the GCRMA alogrithm.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Marc,P.,Stemmler
| | Sample_contact_email | stemmler@immunbio.mpg.de
| | Sample_contact_department | Molecular Embryology
| | Sample_contact_institute | Max-Planck Institute of Immunobiology and Epigenetics
| | Sample_contact_address | Stuebeweg 51
| | Sample_contact_city | Freiburg
| | Sample_contact_zip/postal_code | 79111
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1030nnn/GSM1030606/suppl/GSM1030606_ES_NcGFP_ki_+_sample_1.CEL.gz
| | Sample_series_id | GSE42008
| | Sample_data_row_count | 45101
| | |
|
GSM1030607 | GPL1261 |
|
ES cells NcGFP ki/+ rep 2
|
embryonic stem cells
|
genotype/variation: NcGFP ki/+
|
|
| Sample_geo_accession | GSM1030607
| | Sample_status | Public on Jul 01 2013
| | Sample_submission_date | Nov 02 2012
| | Sample_last_update_date | Jul 01 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | ES cells were grown on diluted EMFI plate prior to isolation in DMEM/15% FCS/10 U/ml Pen/Strep, 0.1 mM NEAA, 2 mM L-glutamin, 0.15 mM β-mercaptoethanol, 500 U Lif
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction followed by a Qiagen Rneasy Kit purification
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | standard Affymetrix protocol
| | Sample_hyb_protocol | standard Affymetrix protocol
| | Sample_scan_protocol | standard Affymetrix protocol
| | Sample_data_processing | Data analysis was performed using the R/Bioconductor Limma software. Quality of the data set was controlled by the simpleaffy package and normalized by quantile normalization with the GCRMA alogrithm.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Marc,P.,Stemmler
| | Sample_contact_email | stemmler@immunbio.mpg.de
| | Sample_contact_department | Molecular Embryology
| | Sample_contact_institute | Max-Planck Institute of Immunobiology and Epigenetics
| | Sample_contact_address | Stuebeweg 51
| | Sample_contact_city | Freiburg
| | Sample_contact_zip/postal_code | 79111
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1030nnn/GSM1030607/suppl/GSM1030607_ES_NcGFP_ki_+_sample_2.CEL.gz
| | Sample_series_id | GSE42008
| | Sample_data_row_count | 45101
| | |
|
GSM1030608 | GPL1261 |
|
ES cells NcGFP ki/ki rep 1
|
embryonic stem cells
|
genotype/variation: NcGFP ki/ki
|
|
| Sample_geo_accession | GSM1030608
| | Sample_status | Public on Jul 01 2013
| | Sample_submission_date | Nov 02 2012
| | Sample_last_update_date | Jul 01 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | ES cells were grown on diluted EMFI plate prior to isolation in DMEM/15% FCS/10 U/ml Pen/Strep, 0.1 mM NEAA, 2 mM L-glutamin, 0.15 mM β-mercaptoethanol, 500 U Lif
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction followed by a Qiagen Rneasy Kit purification
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | standard Affymetrix protocol
| | Sample_hyb_protocol | standard Affymetrix protocol
| | Sample_scan_protocol | standard Affymetrix protocol
| | Sample_data_processing | Data analysis was performed using the R/Bioconductor Limma software. Quality of the data set was controlled by the simpleaffy package and normalized by quantile normalization with the GCRMA alogrithm.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Marc,P.,Stemmler
| | Sample_contact_email | stemmler@immunbio.mpg.de
| | Sample_contact_department | Molecular Embryology
| | Sample_contact_institute | Max-Planck Institute of Immunobiology and Epigenetics
| | Sample_contact_address | Stuebeweg 51
| | Sample_contact_city | Freiburg
| | Sample_contact_zip/postal_code | 79111
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1030nnn/GSM1030608/suppl/GSM1030608_ES_NcGFP_ki_ki_sample_1.CEL.gz
| | Sample_series_id | GSE42008
| | Sample_data_row_count | 45101
| | |
|
GSM1030609 | GPL1261 |
|
ES cells NcGFP ki/ki rep 2
|
embryonic stem cells
|
genotype/variation: NcGFP ki/ki
|
|
| Sample_geo_accession | GSM1030609
| | Sample_status | Public on Jul 01 2013
| | Sample_submission_date | Nov 02 2012
| | Sample_last_update_date | Jul 01 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | ES cells were grown on diluted EMFI plate prior to isolation in DMEM/15% FCS/10 U/ml Pen/Strep, 0.1 mM NEAA, 2 mM L-glutamin, 0.15 mM β-mercaptoethanol, 500 U Lif
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction followed by a Qiagen Rneasy Kit purification
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | standard Affymetrix protocol
| | Sample_hyb_protocol | standard Affymetrix protocol
| | Sample_scan_protocol | standard Affymetrix protocol
| | Sample_data_processing | Data analysis was performed using the R/Bioconductor Limma software. Quality of the data set was controlled by the simpleaffy package and normalized by quantile normalization with the GCRMA alogrithm.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Marc,P.,Stemmler
| | Sample_contact_email | stemmler@immunbio.mpg.de
| | Sample_contact_department | Molecular Embryology
| | Sample_contact_institute | Max-Planck Institute of Immunobiology and Epigenetics
| | Sample_contact_address | Stuebeweg 51
| | Sample_contact_city | Freiburg
| | Sample_contact_zip/postal_code | 79111
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1030nnn/GSM1030609/suppl/GSM1030609_ES_NcGFP_ki_ki_sample_2.CEL.gz
| | Sample_series_id | GSE42008
| | Sample_data_row_count | 45101
| | |
|
GSM1030610 | GPL1261 |
|
ES cells wildtype W4 rep 1
|
embryonic stem cells
|
genotype/variation: wild type
|
|
| Sample_geo_accession | GSM1030610
| | Sample_status | Public on Jul 01 2013
| | Sample_submission_date | Nov 02 2012
| | Sample_last_update_date | Jul 01 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | ES cells were grown on diluted EMFI plate prior to isolation in DMEM/15% FCS/10 U/ml Pen/Strep, 0.1 mM NEAA, 2 mM L-glutamin, 0.15 mM β-mercaptoethanol, 500 U Lif
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction followed by a Qiagen Rneasy Kit purification
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | standard Affymetrix protocol
| | Sample_hyb_protocol | standard Affymetrix protocol
| | Sample_scan_protocol | standard Affymetrix protocol
| | Sample_data_processing | Data analysis was performed using the R/Bioconductor Limma software. Quality of the data set was controlled by the simpleaffy package and normalized by quantile normalization with the GCRMA alogrithm.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Marc,P.,Stemmler
| | Sample_contact_email | stemmler@immunbio.mpg.de
| | Sample_contact_department | Molecular Embryology
| | Sample_contact_institute | Max-Planck Institute of Immunobiology and Epigenetics
| | Sample_contact_address | Stuebeweg 51
| | Sample_contact_city | Freiburg
| | Sample_contact_zip/postal_code | 79111
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1030nnn/GSM1030610/suppl/GSM1030610_ES_W4_sample_1.CEL.gz
| | Sample_series_id | GSE42008
| | Sample_data_row_count | 45101
| | |
|
GSM1030611 | GPL1261 |
|
ES cells wildtype W4 rep 2
|
embryonic stem cells
|
genotype/variation: wild type
|
|
| Sample_geo_accession | GSM1030611
| | Sample_status | Public on Jul 01 2013
| | Sample_submission_date | Nov 02 2012
| | Sample_last_update_date | Jul 01 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | ES cells were grown on diluted EMFI plate prior to isolation in DMEM/15% FCS/10 U/ml Pen/Strep, 0.1 mM NEAA, 2 mM L-glutamin, 0.15 mM β-mercaptoethanol, 500 U Lif
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction followed by a Qiagen Rneasy Kit purification
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | standard Affymetrix protocol
| | Sample_hyb_protocol | standard Affymetrix protocol
| | Sample_scan_protocol | standard Affymetrix protocol
| | Sample_data_processing | Data analysis was performed using the R/Bioconductor Limma software. Quality of the data set was controlled by the simpleaffy package and normalized by quantile normalization with the GCRMA alogrithm.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Marc,P.,Stemmler
| | Sample_contact_email | stemmler@immunbio.mpg.de
| | Sample_contact_department | Molecular Embryology
| | Sample_contact_institute | Max-Planck Institute of Immunobiology and Epigenetics
| | Sample_contact_address | Stuebeweg 51
| | Sample_contact_city | Freiburg
| | Sample_contact_zip/postal_code | 79111
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1030nnn/GSM1030611/suppl/GSM1030611_ES_W4_sample_2.CEL.gz
| | Sample_series_id | GSE42008
| | Sample_data_row_count | 45101
| | |
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