Search results for the GEO ID: GSE42058  |
(Click on the check boxes provided under "Select for analysis", to initiate grouping) |
(Once the selection is made, click on "Add groups" in "Make groups for comparison", to make a group. Scroll down) |
|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM1031685 | GPL570 |
|
HIV uninfected mDC_204
|
HIV uninfected blood CD11c+ cells
|
age: 52
tissue: blood
cell type: whole peripheral blood mononuclear cells (PBMCs)
cell subtype: CD11c+ Myeloid Dendritic Cells (mDCs)
cd4 count: 730
viral load: 0
|
204 PBMC CD11c
|
| Sample_geo_accession | GSM1031685
| | Sample_status | Public on Nov 07 2012
| | Sample_submission_date | Nov 06 2012
| | Sample_last_update_date | Nov 07 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Whole PBMCs were isolated from blood and then CD11c+ cells were sorted using magnetic beads bound to human anti-CD11c+ antibody.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Quiagen Rneasy kit for isolated cells was used as per manufacturer's protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5ug of total RNA
| | Sample_hyb_protocol | Following fragmentation, 15ug of cRNA were hybridized for 16 hrs at 45C on U133 2.0 Human GeneChips. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip scanner 3000.
| | Sample_data_processing | Data was analyzed with Genespring 9.0 software using default analysis settings. No minumium fluorescence cut-off was used for data analysis.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Lauren,,Nagy
| | Sample_contact_laboratory | Dandekar
| | Sample_contact_department | Medical Microbiology and Immunology
| | Sample_contact_institute | University of California-Davis
| | Sample_contact_address | 451 Health Sciences
| | Sample_contact_city | Davis
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 95616
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1031nnn/GSM1031685/suppl/GSM1031685_204_PBMC_CD11c_U133_2.0.CEL.gz
| | Sample_series_id | GSE42058
| | Sample_data_row_count | 54612
| | |
|
GSM1031686 | GPL570 |
|
HIV uninfected mDC_213
|
HIV uninfected blood CD11c+ cells
|
age: 43
tissue: blood
cell type: whole peripheral blood mononuclear cells (PBMCs)
cell subtype: CD11c+ Myeloid Dendritic Cells (mDCs)
cd4 count: 1021
viral load: 0
|
213 PBMC CD11c
|
| Sample_geo_accession | GSM1031686
| | Sample_status | Public on Nov 07 2012
| | Sample_submission_date | Nov 06 2012
| | Sample_last_update_date | Nov 07 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Whole PBMCs were isolated from blood and then CD11c+ cells were sorted using magnetic beads bound to human anti-CD11c+ antibody.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Quiagen Rneasy kit for isolated cells was used as per manufacturer's protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5ug of total RNA
| | Sample_hyb_protocol | Following fragmentation, 15ug of cRNA were hybridized for 16 hrs at 45C on U133 2.0 Human GeneChips. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip scanner 3000.
| | Sample_data_processing | Data was analyzed with Genespring 9.0 software using default analysis settings. No minumium fluorescence cut-off was used for data analysis.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Lauren,,Nagy
| | Sample_contact_laboratory | Dandekar
| | Sample_contact_department | Medical Microbiology and Immunology
| | Sample_contact_institute | University of California-Davis
| | Sample_contact_address | 451 Health Sciences
| | Sample_contact_city | Davis
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 95616
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1031nnn/GSM1031686/suppl/GSM1031686_213_PBMC_CD11c_U133_2.0.CEL.gz
| | Sample_series_id | GSE42058
| | Sample_data_row_count | 54612
| | |
|
GSM1031687 | GPL570 |
|
HIV uninfected mDC_214
|
HIV uninfected blood CD11c+ cells
|
age: 36
tissue: blood
cell type: whole peripheral blood mononuclear cells (PBMCs)
cell subtype: CD11c+ Myeloid Dendritic Cells (mDCs)
cd4 count: 1559
viral load: 0
|
214 PBMC CD11c
|
| Sample_geo_accession | GSM1031687
| | Sample_status | Public on Nov 07 2012
| | Sample_submission_date | Nov 06 2012
| | Sample_last_update_date | Nov 07 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Whole PBMCs were isolated from blood and then CD11c+ cells were sorted using magnetic beads bound to human anti-CD11c+ antibody.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Quiagen Rneasy kit for isolated cells was used as per manufacturer's protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5ug of total RNA
| | Sample_hyb_protocol | Following fragmentation, 15ug of cRNA were hybridized for 16 hrs at 45C on U133 2.0 Human GeneChips. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip scanner 3000.
| | Sample_data_processing | Data was analyzed with Genespring 9.0 software using default analysis settings. No minumium fluorescence cut-off was used for data analysis.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Lauren,,Nagy
| | Sample_contact_laboratory | Dandekar
| | Sample_contact_department | Medical Microbiology and Immunology
| | Sample_contact_institute | University of California-Davis
| | Sample_contact_address | 451 Health Sciences
| | Sample_contact_city | Davis
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 95616
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1031nnn/GSM1031687/suppl/GSM1031687_214_PBMC_CD11c_U133_2.0.CEL.gz
| | Sample_series_id | GSE42058
| | Sample_data_row_count | 54612
| | |
|
GSM1031688 | GPL570 |
|
HIV uninfected mDC_215
|
HIV uninfected blood CD11c+ cells
|
age: 57
tissue: blood
cell type: whole peripheral blood mononuclear cells (PBMCs)
cell subtype: CD11c+ Myeloid Dendritic Cells (mDCs)
cd4 count: 380
viral load: 0
|
215 PBMC CD11c
|
| Sample_geo_accession | GSM1031688
| | Sample_status | Public on Nov 07 2012
| | Sample_submission_date | Nov 06 2012
| | Sample_last_update_date | Nov 07 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Whole PBMCs were isolated from blood and then CD11c+ cells were sorted using magnetic beads bound to human anti-CD11c+ antibody.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Quiagen Rneasy kit for isolated cells was used as per manufacturer's protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5ug of total RNA
| | Sample_hyb_protocol | Following fragmentation, 15ug of cRNA were hybridized for 16 hrs at 45C on U133 2.0 Human GeneChips. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip scanner 3000.
| | Sample_data_processing | Data was analyzed with Genespring 9.0 software using default analysis settings. No minumium fluorescence cut-off was used for data analysis.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Lauren,,Nagy
| | Sample_contact_laboratory | Dandekar
| | Sample_contact_department | Medical Microbiology and Immunology
| | Sample_contact_institute | University of California-Davis
| | Sample_contact_address | 451 Health Sciences
| | Sample_contact_city | Davis
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 95616
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1031nnn/GSM1031688/suppl/GSM1031688_215_PBMC_CD11c_U133_2.0.CEL.gz
| | Sample_series_id | GSE42058
| | Sample_data_row_count | 54612
| | |
|
GSM1031689 | GPL570 |
|
HIV infected mDC_1009
|
HIV infected blood CD11c+ cells
|
age: 58
tissue: blood
cell type: whole peripheral blood mononuclear cells (PBMCs)
cell subtype: CD11c+ Myeloid Dendritic Cells (mDCs)
cd4 count: 234
viral load: 576620
|
1009 PBMC CD11c
|
| Sample_geo_accession | GSM1031689
| | Sample_status | Public on Nov 07 2012
| | Sample_submission_date | Nov 06 2012
| | Sample_last_update_date | Nov 07 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Whole PBMCs were isolated from blood and then CD11c+ cells were sorted using magnetic beads bound to human anti-CD11c+ antibody.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Quiagen Rneasy kit for isolated cells was used as per manufacturer's protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5ug of total RNA
| | Sample_hyb_protocol | Following fragmentation, 15ug of cRNA were hybridized for 16 hrs at 45C on U133 2.0 Human GeneChips. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip scanner 3000.
| | Sample_data_processing | Data was analyzed with Genespring 9.0 software using default analysis settings. No minumium fluorescence cut-off was used for data analysis.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Lauren,,Nagy
| | Sample_contact_laboratory | Dandekar
| | Sample_contact_department | Medical Microbiology and Immunology
| | Sample_contact_institute | University of California-Davis
| | Sample_contact_address | 451 Health Sciences
| | Sample_contact_city | Davis
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 95616
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1031nnn/GSM1031689/suppl/GSM1031689_1009_PBMC_CD11c_Chronic.CEL.gz
| | Sample_series_id | GSE42058
| | Sample_data_row_count | 54612
| | |
|
GSM1031690 | GPL570 |
|
HIV infected mDC_1010
|
HIV infected blood CD11c+ cells
|
age: 45
tissue: blood
cell type: whole peripheral blood mononuclear cells (PBMCs)
cell subtype: CD11c+ Myeloid Dendritic Cells (mDCs)
cd4 count: 84
viral load: 976464
|
1010 PBMC CD11c
|
| Sample_geo_accession | GSM1031690
| | Sample_status | Public on Nov 07 2012
| | Sample_submission_date | Nov 06 2012
| | Sample_last_update_date | Nov 07 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Whole PBMCs were isolated from blood and then CD11c+ cells were sorted using magnetic beads bound to human anti-CD11c+ antibody.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Quiagen Rneasy kit for isolated cells was used as per manufacturer's protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5ug of total RNA
| | Sample_hyb_protocol | Following fragmentation, 15ug of cRNA were hybridized for 16 hrs at 45C on U133 2.0 Human GeneChips. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip scanner 3000.
| | Sample_data_processing | Data was analyzed with Genespring 9.0 software using default analysis settings. No minumium fluorescence cut-off was used for data analysis.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Lauren,,Nagy
| | Sample_contact_laboratory | Dandekar
| | Sample_contact_department | Medical Microbiology and Immunology
| | Sample_contact_institute | University of California-Davis
| | Sample_contact_address | 451 Health Sciences
| | Sample_contact_city | Davis
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 95616
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1031nnn/GSM1031690/suppl/GSM1031690_1010_PBMC_CD11c_Chronic.CEL.gz
| | Sample_series_id | GSE42058
| | Sample_data_row_count | 54612
| | |
|
GSM1031691 | GPL570 |
|
HIV infected mDC_1011
|
HIV infected blood CD11c+ cells
|
age: 45
tissue: blood
cell type: whole peripheral blood mononuclear cells (PBMCs)
cell subtype: CD11c+ Myeloid Dendritic Cells (mDCs)
cd4 count: 218
viral load: 19807
|
1011 PBMC CD11c
|
| Sample_geo_accession | GSM1031691
| | Sample_status | Public on Nov 07 2012
| | Sample_submission_date | Nov 06 2012
| | Sample_last_update_date | Nov 07 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Whole PBMCs were isolated from blood and then CD11c+ cells were sorted using magnetic beads bound to human anti-CD11c+ antibody.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Quiagen Rneasy kit for isolated cells was used as per manufacturer's protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5ug of total RNA
| | Sample_hyb_protocol | Following fragmentation, 15ug of cRNA were hybridized for 16 hrs at 45C on U133 2.0 Human GeneChips. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip scanner 3000.
| | Sample_data_processing | Data was analyzed with Genespring 9.0 software using default analysis settings. No minumium fluorescence cut-off was used for data analysis.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Lauren,,Nagy
| | Sample_contact_laboratory | Dandekar
| | Sample_contact_department | Medical Microbiology and Immunology
| | Sample_contact_institute | University of California-Davis
| | Sample_contact_address | 451 Health Sciences
| | Sample_contact_city | Davis
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 95616
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1031nnn/GSM1031691/suppl/GSM1031691_1011_PBMC_CD11c_Chronic.CEL.gz
| | Sample_series_id | GSE42058
| | Sample_data_row_count | 54612
| | |
|
GSM1031692 | GPL570 |
|
HIV infected mDC_232
|
HIV infected blood CD11c+ cells
|
age: 42
tissue: blood
cell type: whole peripheral blood mononuclear cells (PBMCs)
cell subtype: CD11c+ Myeloid Dendritic Cells (mDCs)
cd4 count: 637
viral load: 15485
|
232 PBMC CD11c
|
| Sample_geo_accession | GSM1031692
| | Sample_status | Public on Nov 07 2012
| | Sample_submission_date | Nov 06 2012
| | Sample_last_update_date | Nov 07 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Whole PBMCs were isolated from blood and then CD11c+ cells were sorted using magnetic beads bound to human anti-CD11c+ antibody.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Quiagen Rneasy kit for isolated cells was used as per manufacturer's protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5ug of total RNA
| | Sample_hyb_protocol | Following fragmentation, 15ug of cRNA were hybridized for 16 hrs at 45C on U133 2.0 Human GeneChips. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip scanner 3000.
| | Sample_data_processing | Data was analyzed with Genespring 9.0 software using default analysis settings. No minumium fluorescence cut-off was used for data analysis.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Lauren,,Nagy
| | Sample_contact_laboratory | Dandekar
| | Sample_contact_department | Medical Microbiology and Immunology
| | Sample_contact_institute | University of California-Davis
| | Sample_contact_address | 451 Health Sciences
| | Sample_contact_city | Davis
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 95616
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1031nnn/GSM1031692/suppl/GSM1031692_232_PBMC_CD11c_Chronic.CEL.gz
| | Sample_series_id | GSE42058
| | Sample_data_row_count | 54612
| | |
|
| |
| |
Make groups for comparisons |
(2 groups will be compared at a time) |
|
| Select GSMs and click on "Add groups" |
Enter the group name here: |
|
|
|
