Search results for the GEO ID: GSE42114  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM1032704 | GPL570 |
|
P1 - basal
|
basal cells
|
patient: P1
cell type: basal cells
|
laser capture microdissection tissue
|
| Sample_geo_accession | GSM1032704
| | Sample_status | Public on Jan 30 2013
| | Sample_submission_date | Nov 07 2012
| | Sample_last_update_date | Jan 30 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using RNeasy Micro Kit (Qiagen, Valencia, CA) according to the manufacturer’s protocol with on-column DNase digestion
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | GeneChip Affymetrix protocol
| | Sample_hyb_protocol | RNA was hybridized to HGU133 Plus 2.0 chips to measure relative gene expression.
| | Sample_scan_protocol | Hewlett-Packard GeneArray Scanner
| | Sample_data_processing | GCRMA (using gcrma package from R/Bioconductor)
| | Sample_platform_id | GPL570
| | Sample_contact_name | Mayte,,Suarez-Farinas
| | Sample_contact_email | farinam@rockefeller.edu
| | Sample_contact_institute | Rockefeller University
| | Sample_contact_address | 1230 York ave
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10075
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1032nnn/GSM1032704/suppl/GSM1032704_1b_HGU133_plus_2.0_Nick_040111.CEL.gz
| | Sample_series_id | GSE42114
| | Sample_data_row_count | 54675
| | |
|
GSM1032705 | GPL570 |
|
P1 - suprabasal
|
suprabasal cells
|
patient: P1
cell type: suprabasal cells
|
laser capture microdissection tissue
|
| Sample_geo_accession | GSM1032705
| | Sample_status | Public on Jan 30 2013
| | Sample_submission_date | Nov 07 2012
| | Sample_last_update_date | Jan 30 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using RNeasy Micro Kit (Qiagen, Valencia, CA) according to the manufacturer’s protocol with on-column DNase digestion
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | GeneChip Affymetrix protocol
| | Sample_hyb_protocol | RNA was hybridized to HGU133 Plus 2.0 chips to measure relative gene expression.
| | Sample_scan_protocol | Hewlett-Packard GeneArray Scanner
| | Sample_data_processing | GCRMA (using gcrma package from R/Bioconductor)
| | Sample_platform_id | GPL570
| | Sample_contact_name | Mayte,,Suarez-Farinas
| | Sample_contact_email | farinam@rockefeller.edu
| | Sample_contact_institute | Rockefeller University
| | Sample_contact_address | 1230 York ave
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10075
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1032nnn/GSM1032705/suppl/GSM1032705_1s_HGU133_plus_2.0_Nick_040111.CEL.gz
| | Sample_series_id | GSE42114
| | Sample_data_row_count | 54675
| | |
|
GSM1032706 | GPL570 |
|
P1 - reticular dermis
|
reticular dermis cells
|
patient: P1
cell type: reticular dermis cells
|
laser capture microdissection tissue
|
| Sample_geo_accession | GSM1032706
| | Sample_status | Public on Jan 30 2013
| | Sample_submission_date | Nov 07 2012
| | Sample_last_update_date | Jan 30 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using RNeasy Micro Kit (Qiagen, Valencia, CA) according to the manufacturer’s protocol with on-column DNase digestion
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | GeneChip Affymetrix protocol
| | Sample_hyb_protocol | RNA was hybridized to HGU133 Plus 2.0 chips to measure relative gene expression.
| | Sample_scan_protocol | Hewlett-Packard GeneArray Scanner
| | Sample_data_processing | GCRMA (using gcrma package from R/Bioconductor)
| | Sample_platform_id | GPL570
| | Sample_contact_name | Mayte,,Suarez-Farinas
| | Sample_contact_email | farinam@rockefeller.edu
| | Sample_contact_institute | Rockefeller University
| | Sample_contact_address | 1230 York ave
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10075
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1032nnn/GSM1032706/suppl/GSM1032706_1r_HGU133_plus_2.0_Nick_040111.CEL.gz
| | Sample_series_id | GSE42114
| | Sample_data_row_count | 54675
| | |
|
GSM1032707 | GPL570 |
|
P2 - basal
|
basal cells
|
patient: P2
cell type: basal cells
|
laser capture microdissection tissue
|
| Sample_geo_accession | GSM1032707
| | Sample_status | Public on Jan 30 2013
| | Sample_submission_date | Nov 07 2012
| | Sample_last_update_date | Jan 30 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using RNeasy Micro Kit (Qiagen, Valencia, CA) according to the manufacturer’s protocol with on-column DNase digestion
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | GeneChip Affymetrix protocol
| | Sample_hyb_protocol | RNA was hybridized to HGU133 Plus 2.0 chips to measure relative gene expression.
| | Sample_scan_protocol | Hewlett-Packard GeneArray Scanner
| | Sample_data_processing | GCRMA (using gcrma package from R/Bioconductor)
| | Sample_platform_id | GPL570
| | Sample_contact_name | Mayte,,Suarez-Farinas
| | Sample_contact_email | farinam@rockefeller.edu
| | Sample_contact_institute | Rockefeller University
| | Sample_contact_address | 1230 York ave
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10075
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1032nnn/GSM1032707/suppl/GSM1032707_2b_HGU133_plus_2.0_Nick_040111.CEL.gz
| | Sample_series_id | GSE42114
| | Sample_data_row_count | 54675
| | |
|
GSM1032708 | GPL570 |
|
P2 - suprabasal
|
suprabasal cells
|
patient: P2
cell type: suprabasal cells
|
laser capture microdissection tissue
|
| Sample_geo_accession | GSM1032708
| | Sample_status | Public on Jan 30 2013
| | Sample_submission_date | Nov 07 2012
| | Sample_last_update_date | Jan 30 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using RNeasy Micro Kit (Qiagen, Valencia, CA) according to the manufacturer’s protocol with on-column DNase digestion
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | GeneChip Affymetrix protocol
| | Sample_hyb_protocol | RNA was hybridized to HGU133 Plus 2.0 chips to measure relative gene expression.
| | Sample_scan_protocol | Hewlett-Packard GeneArray Scanner
| | Sample_data_processing | GCRMA (using gcrma package from R/Bioconductor)
| | Sample_platform_id | GPL570
| | Sample_contact_name | Mayte,,Suarez-Farinas
| | Sample_contact_email | farinam@rockefeller.edu
| | Sample_contact_institute | Rockefeller University
| | Sample_contact_address | 1230 York ave
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10075
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1032nnn/GSM1032708/suppl/GSM1032708_2s_HGU133_plus_2.0_Nick_040111.CEL.gz
| | Sample_series_id | GSE42114
| | Sample_data_row_count | 54675
| | |
|
GSM1032709 | GPL570 |
|
P2 - reticular dermis
|
reticular dermis cells
|
patient: P2
cell type: reticular dermis cells
|
laser capture microdissection tissue
|
| Sample_geo_accession | GSM1032709
| | Sample_status | Public on Jan 30 2013
| | Sample_submission_date | Nov 07 2012
| | Sample_last_update_date | Jan 30 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using RNeasy Micro Kit (Qiagen, Valencia, CA) according to the manufacturer’s protocol with on-column DNase digestion
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | GeneChip Affymetrix protocol
| | Sample_hyb_protocol | RNA was hybridized to HGU133 Plus 2.0 chips to measure relative gene expression.
| | Sample_scan_protocol | Hewlett-Packard GeneArray Scanner
| | Sample_data_processing | GCRMA (using gcrma package from R/Bioconductor)
| | Sample_platform_id | GPL570
| | Sample_contact_name | Mayte,,Suarez-Farinas
| | Sample_contact_email | farinam@rockefeller.edu
| | Sample_contact_institute | Rockefeller University
| | Sample_contact_address | 1230 York ave
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10075
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1032nnn/GSM1032709/suppl/GSM1032709_2r_HGU133_plus_2.0_Nick_040111.CEL.gz
| | Sample_series_id | GSE42114
| | Sample_data_row_count | 54675
| | |
|
GSM1032710 | GPL570 |
|
P3 - basal
|
basal cells
|
patient: P3
cell type: basal cells
|
laser capture microdissection tissue
|
| Sample_geo_accession | GSM1032710
| | Sample_status | Public on Jan 30 2013
| | Sample_submission_date | Nov 07 2012
| | Sample_last_update_date | Jan 30 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using RNeasy Micro Kit (Qiagen, Valencia, CA) according to the manufacturer’s protocol with on-column DNase digestion
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | GeneChip Affymetrix protocol
| | Sample_hyb_protocol | RNA was hybridized to HGU133 Plus 2.0 chips to measure relative gene expression.
| | Sample_scan_protocol | Hewlett-Packard GeneArray Scanner
| | Sample_data_processing | GCRMA (using gcrma package from R/Bioconductor)
| | Sample_platform_id | GPL570
| | Sample_contact_name | Mayte,,Suarez-Farinas
| | Sample_contact_email | farinam@rockefeller.edu
| | Sample_contact_institute | Rockefeller University
| | Sample_contact_address | 1230 York ave
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10075
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1032nnn/GSM1032710/suppl/GSM1032710_3b_HGU133_plus_2.0_Hiroshi_112409.CEL.gz
| | Sample_series_id | GSE42114
| | Sample_data_row_count | 54675
| | |
|
GSM1032711 | GPL570 |
|
P3 - suprabasal
|
suprabasal cells
|
patient: P3
cell type: suprabasal cells
|
laser capture microdissection tissue
|
| Sample_geo_accession | GSM1032711
| | Sample_status | Public on Jan 30 2013
| | Sample_submission_date | Nov 07 2012
| | Sample_last_update_date | Jan 30 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using RNeasy Micro Kit (Qiagen, Valencia, CA) according to the manufacturer’s protocol with on-column DNase digestion
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | GeneChip Affymetrix protocol
| | Sample_hyb_protocol | RNA was hybridized to HGU133 Plus 2.0 chips to measure relative gene expression.
| | Sample_scan_protocol | Hewlett-Packard GeneArray Scanner
| | Sample_data_processing | GCRMA (using gcrma package from R/Bioconductor)
| | Sample_platform_id | GPL570
| | Sample_contact_name | Mayte,,Suarez-Farinas
| | Sample_contact_email | farinam@rockefeller.edu
| | Sample_contact_institute | Rockefeller University
| | Sample_contact_address | 1230 York ave
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10075
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1032nnn/GSM1032711/suppl/GSM1032711_3s_HGU133_plus_2.0_Hiroshi_112409.CEL.gz
| | Sample_series_id | GSE42114
| | Sample_data_row_count | 54675
| | |
|
GSM1032712 | GPL570 |
|
P3 - reticular dermis
|
reticular dermis cells
|
patient: P3
cell type: reticular dermis cells
|
laser capture microdissection tissue
|
| Sample_geo_accession | GSM1032712
| | Sample_status | Public on Jan 30 2013
| | Sample_submission_date | Nov 07 2012
| | Sample_last_update_date | Jan 30 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using RNeasy Micro Kit (Qiagen, Valencia, CA) according to the manufacturer’s protocol with on-column DNase digestion
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | GeneChip Affymetrix protocol
| | Sample_hyb_protocol | RNA was hybridized to HGU133 Plus 2.0 chips to measure relative gene expression.
| | Sample_scan_protocol | Hewlett-Packard GeneArray Scanner
| | Sample_data_processing | GCRMA (using gcrma package from R/Bioconductor)
| | Sample_platform_id | GPL570
| | Sample_contact_name | Mayte,,Suarez-Farinas
| | Sample_contact_email | farinam@rockefeller.edu
| | Sample_contact_institute | Rockefeller University
| | Sample_contact_address | 1230 York ave
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10075
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1032nnn/GSM1032712/suppl/GSM1032712_3r_HGU133_plus_2.0_Hiroshi_112409.CEL.gz
| | Sample_series_id | GSE42114
| | Sample_data_row_count | 54675
| | |
|
GSM1032713 | GPL570 |
|
normal skin 1
|
normal skin epidermal cells
|
patient: healthy volunteer 1
cell type: normal epidermis
|
|
| Sample_geo_accession | GSM1032713
| | Sample_status | Public on Jan 30 2013
| | Sample_submission_date | Nov 07 2012
| | Sample_last_update_date | Jan 30 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using RNeasy Micro Kit (Qiagen, Valencia, CA) according to the manufacturer’s protocol with on-column DNase digestion
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | GeneChip Affymetrix protocol
| | Sample_hyb_protocol | RNA was hybridized to HGU133 Plus 2.0 chips to measure relative gene expression.
| | Sample_scan_protocol | Hewlett-Packard GeneArray Scanner
| | Sample_data_processing | GCRMA (using gcrma package from R/Bioconductor)
| | Sample_platform_id | GPL570
| | Sample_contact_name | Mayte,,Suarez-Farinas
| | Sample_contact_email | farinam@rockefeller.edu
| | Sample_contact_institute | Rockefeller University
| | Sample_contact_address | 1230 York ave
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10075
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1032nnn/GSM1032713/suppl/GSM1032713_1_HGU133_plus_2.0_Hiroshi_031210.CEL.gz
| | Sample_relation | Reanalysis of: GSM753013
| | Sample_series_id | GSE42114
| | Sample_data_row_count | 54675
| | |
|
GSM1032714 | GPL570 |
|
normal skin 2
|
normal skin epidermal cells
|
patient: healthy volunteer 2
cell type: normal epidermis
|
|
| Sample_geo_accession | GSM1032714
| | Sample_status | Public on Jan 30 2013
| | Sample_submission_date | Nov 07 2012
| | Sample_last_update_date | Jan 30 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using RNeasy Micro Kit (Qiagen, Valencia, CA) according to the manufacturer’s protocol with on-column DNase digestion
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | GeneChip Affymetrix protocol
| | Sample_hyb_protocol | RNA was hybridized to HGU133 Plus 2.0 chips to measure relative gene expression.
| | Sample_scan_protocol | Hewlett-Packard GeneArray Scanner
| | Sample_data_processing | GCRMA (using gcrma package from R/Bioconductor)
| | Sample_platform_id | GPL570
| | Sample_contact_name | Mayte,,Suarez-Farinas
| | Sample_contact_email | farinam@rockefeller.edu
| | Sample_contact_institute | Rockefeller University
| | Sample_contact_address | 1230 York ave
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10075
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1032nnn/GSM1032714/suppl/GSM1032714_1_HGU133_plus_2.0_Hiroshi_040709.CEL.gz
| | Sample_series_id | GSE42114
| | Sample_data_row_count | 54675
| | |
|
GSM1032715 | GPL570 |
|
normal skin 3
|
normal skin epidermal cells
|
patient: healthy volunteer 3
cell type: normal epidermis
|
|
| Sample_geo_accession | GSM1032715
| | Sample_status | Public on Jan 30 2013
| | Sample_submission_date | Nov 07 2012
| | Sample_last_update_date | Jan 30 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using RNeasy Micro Kit (Qiagen, Valencia, CA) according to the manufacturer’s protocol with on-column DNase digestion
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | GeneChip Affymetrix protocol
| | Sample_hyb_protocol | RNA was hybridized to HGU133 Plus 2.0 chips to measure relative gene expression.
| | Sample_scan_protocol | Hewlett-Packard GeneArray Scanner
| | Sample_data_processing | GCRMA (using gcrma package from R/Bioconductor)
| | Sample_platform_id | GPL570
| | Sample_contact_name | Mayte,,Suarez-Farinas
| | Sample_contact_email | farinam@rockefeller.edu
| | Sample_contact_institute | Rockefeller University
| | Sample_contact_address | 1230 York ave
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10075
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1032nnn/GSM1032715/suppl/GSM1032715_2_HGU133_plus_2.0_Hiroshi_031210.CEL.gz
| | Sample_series_id | GSE42114
| | Sample_data_row_count | 54675
| | |
|
GSM1032716 | GPL570 |
|
normal skin 4
|
normal skin epidermal cells
|
patient: healthy volunteer 4
cell type: normal epidermis
|
|
| Sample_geo_accession | GSM1032716
| | Sample_status | Public on Jan 30 2013
| | Sample_submission_date | Nov 07 2012
| | Sample_last_update_date | Jan 30 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using RNeasy Micro Kit (Qiagen, Valencia, CA) according to the manufacturer’s protocol with on-column DNase digestion
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | GeneChip Affymetrix protocol
| | Sample_hyb_protocol | RNA was hybridized to HGU133 Plus 2.0 chips to measure relative gene expression.
| | Sample_scan_protocol | Hewlett-Packard GeneArray Scanner
| | Sample_data_processing | GCRMA (using gcrma package from R/Bioconductor)
| | Sample_platform_id | GPL570
| | Sample_contact_name | Mayte,,Suarez-Farinas
| | Sample_contact_email | farinam@rockefeller.edu
| | Sample_contact_institute | Rockefeller University
| | Sample_contact_address | 1230 York ave
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10075
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1032nnn/GSM1032716/suppl/GSM1032716_2_HGU133_plus_2.0_Hiroshi_040709.CEL.gz
| | Sample_series_id | GSE42114
| | Sample_data_row_count | 54675
| | |
|
GSM1032717 | GPL570 |
|
normal skin 5
|
normal skin epidermal cells
|
patient: healthy volunteer 5
cell type: normal epidermis
|
|
| Sample_geo_accession | GSM1032717
| | Sample_status | Public on Jan 30 2013
| | Sample_submission_date | Nov 07 2012
| | Sample_last_update_date | Jan 30 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using RNeasy Micro Kit (Qiagen, Valencia, CA) according to the manufacturer’s protocol with on-column DNase digestion
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | GeneChip Affymetrix protocol
| | Sample_hyb_protocol | RNA was hybridized to HGU133 Plus 2.0 chips to measure relative gene expression.
| | Sample_scan_protocol | Hewlett-Packard GeneArray Scanner
| | Sample_data_processing | GCRMA (using gcrma package from R/Bioconductor)
| | Sample_platform_id | GPL570
| | Sample_contact_name | Mayte,,Suarez-Farinas
| | Sample_contact_email | farinam@rockefeller.edu
| | Sample_contact_institute | Rockefeller University
| | Sample_contact_address | 1230 York ave
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10075
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1032nnn/GSM1032717/suppl/GSM1032717_3_HGU133_plus_2.0_Hiroshi_031210.CEL.gz
| | Sample_series_id | GSE42114
| | Sample_data_row_count | 54675
| | |
|
GSM1032718 | GPL570 |
|
normal skin 6
|
normal skin epidermal cells
|
patient: healthy volunteer 6
cell type: normal epidermis
|
|
| Sample_geo_accession | GSM1032718
| | Sample_status | Public on Jan 30 2013
| | Sample_submission_date | Nov 07 2012
| | Sample_last_update_date | Jan 30 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using RNeasy Micro Kit (Qiagen, Valencia, CA) according to the manufacturer’s protocol with on-column DNase digestion
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | GeneChip Affymetrix protocol
| | Sample_hyb_protocol | RNA was hybridized to HGU133 Plus 2.0 chips to measure relative gene expression.
| | Sample_scan_protocol | Hewlett-Packard GeneArray Scanner
| | Sample_data_processing | GCRMA (using gcrma package from R/Bioconductor)
| | Sample_platform_id | GPL570
| | Sample_contact_name | Mayte,,Suarez-Farinas
| | Sample_contact_email | farinam@rockefeller.edu
| | Sample_contact_institute | Rockefeller University
| | Sample_contact_address | 1230 York ave
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10075
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1032nnn/GSM1032718/suppl/GSM1032718_3_HGU133_plus_2.0_Hiroshi_040709.CEL.gz
| | Sample_series_id | GSE42114
| | Sample_data_row_count | 54675
| | |
|
GSM1032719 | GPL570 |
|
normal skin 7
|
normal skin epidermal cells
|
patient: healthy volunteer 7
cell type: normal epidermis
|
|
| Sample_geo_accession | GSM1032719
| | Sample_status | Public on Jan 30 2013
| | Sample_submission_date | Nov 07 2012
| | Sample_last_update_date | Jan 30 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using RNeasy Micro Kit (Qiagen, Valencia, CA) according to the manufacturer’s protocol with on-column DNase digestion
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | GeneChip Affymetrix protocol
| | Sample_hyb_protocol | RNA was hybridized to HGU133 Plus 2.0 chips to measure relative gene expression.
| | Sample_scan_protocol | Hewlett-Packard GeneArray Scanner
| | Sample_data_processing | GCRMA (using gcrma package from R/Bioconductor)
| | Sample_platform_id | GPL570
| | Sample_contact_name | Mayte,,Suarez-Farinas
| | Sample_contact_email | farinam@rockefeller.edu
| | Sample_contact_institute | Rockefeller University
| | Sample_contact_address | 1230 York ave
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10075
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1032nnn/GSM1032719/suppl/GSM1032719_4_HGU133_plus_2.0_Hiroshi_031210.CEL.gz
| | Sample_series_id | GSE42114
| | Sample_data_row_count | 54675
| | |
|
GSM1032720 | GPL570 |
|
normal skin 8
|
normal skin epidermal cells
|
patient: healthy volunteer 8
cell type: normal epidermis
|
|
| Sample_geo_accession | GSM1032720
| | Sample_status | Public on Jan 30 2013
| | Sample_submission_date | Nov 07 2012
| | Sample_last_update_date | Jan 30 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using RNeasy Micro Kit (Qiagen, Valencia, CA) according to the manufacturer’s protocol with on-column DNase digestion
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | GeneChip Affymetrix protocol
| | Sample_hyb_protocol | RNA was hybridized to HGU133 Plus 2.0 chips to measure relative gene expression.
| | Sample_scan_protocol | Hewlett-Packard GeneArray Scanner
| | Sample_data_processing | GCRMA (using gcrma package from R/Bioconductor)
| | Sample_platform_id | GPL570
| | Sample_contact_name | Mayte,,Suarez-Farinas
| | Sample_contact_email | farinam@rockefeller.edu
| | Sample_contact_institute | Rockefeller University
| | Sample_contact_address | 1230 York ave
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10075
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1032nnn/GSM1032720/suppl/GSM1032720_5_HGU133_plus_2.0_Hiroshi_031210.CEL.gz
| | Sample_series_id | GSE42114
| | Sample_data_row_count | 54675
| | |
|
GSM1032721 | GPL570 |
|
normal skin 9
|
normal skin epidermal cells
|
patient: healthy volunteer 9
cell type: normal epidermis
|
|
| Sample_geo_accession | GSM1032721
| | Sample_status | Public on Jan 30 2013
| | Sample_submission_date | Nov 07 2012
| | Sample_last_update_date | Jan 30 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using RNeasy Micro Kit (Qiagen, Valencia, CA) according to the manufacturer’s protocol with on-column DNase digestion
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | GeneChip Affymetrix protocol
| | Sample_hyb_protocol | RNA was hybridized to HGU133 Plus 2.0 chips to measure relative gene expression.
| | Sample_scan_protocol | Hewlett-Packard GeneArray Scanner
| | Sample_data_processing | GCRMA (using gcrma package from R/Bioconductor)
| | Sample_platform_id | GPL570
| | Sample_contact_name | Mayte,,Suarez-Farinas
| | Sample_contact_email | farinam@rockefeller.edu
| | Sample_contact_institute | Rockefeller University
| | Sample_contact_address | 1230 York ave
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10075
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1032nnn/GSM1032721/suppl/GSM1032721_6_HGU133_plus_2.0_Hiroshi_031210.CEL.gz
| | Sample_series_id | GSE42114
| | Sample_data_row_count | 54675
| | |
|
GSM1032722 | GPL570 |
|
normal skin 10
|
normal skin epidermal cells
|
patient: healthy volunteer 10
cell type: normal epidermis
|
|
| Sample_geo_accession | GSM1032722
| | Sample_status | Public on Jan 30 2013
| | Sample_submission_date | Nov 07 2012
| | Sample_last_update_date | Jan 30 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using RNeasy Micro Kit (Qiagen, Valencia, CA) according to the manufacturer’s protocol with on-column DNase digestion
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | GeneChip Affymetrix protocol
| | Sample_hyb_protocol | RNA was hybridized to HGU133 Plus 2.0 chips to measure relative gene expression.
| | Sample_scan_protocol | Hewlett-Packard GeneArray Scanner
| | Sample_data_processing | GCRMA (using gcrma package from R/Bioconductor)
| | Sample_platform_id | GPL570
| | Sample_contact_name | Mayte,,Suarez-Farinas
| | Sample_contact_email | farinam@rockefeller.edu
| | Sample_contact_institute | Rockefeller University
| | Sample_contact_address | 1230 York ave
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10075
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1032nnn/GSM1032722/suppl/GSM1032722_7_HGU133_plus_2.0_Hiroshi_031210.CEL.gz
| | Sample_series_id | GSE42114
| | Sample_data_row_count | 54675
| | |
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Make groups for comparisons |
(2 groups will be compared at a time) |
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| Select GSMs and click on "Add groups" |
Enter the group name here: |
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