Search results for the GEO ID: GSE42203  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM1035303 | GPL570 |
|
RL
|
Diffuse large B-cell lymphoma cell line RL
|
cell line: RL
cell type: diffuse large B-cell lymphoma (DLBCL) cells
tumor subtype: germinal center B-cell like
|
Gene expression data from a DLBCL cell line.
|
| Sample_geo_accession | GSM1035303
| | Sample_status | Public on Nov 10 2012
| | Sample_submission_date | Nov 09 2012
| | Sample_last_update_date | Nov 10 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | No treatment was performed.
| | Sample_growth_protocol_ch1 | Cells were grown in RPMI 1640 supplemented with 10% fetal bovine serum, 100 units/mL of penicillin and 100 mg/mL of streptomycin at 37ºC and 5% CO2.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The cells were harvested with TRIzol Reagent (Invitrogen) and the RNA was extracted according to the manufacturer's instructions. As a last step of the extraction procedure, the RNA was purified with the RNeasy Mini-kit (Qiagen, Hilden, Germany).
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | The cDNA was prepared from 2 microg total RNA using the One-Cycle cDNA Synthesis kit from Affymetrix. This cDNA was used for synthesizing the cRNA using the IVT labeling kit (Affymetrix). The synthesized cRNA was purified with the GeneChip Sample Cleanup Module (Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized to the Affymetrix HG-U133 Plus 2.0 chip according to the protocols provided by the manufacturer.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 from Affymetrix.
| | Sample_data_processing | Data were normalized with Bioconductor software using the RMA algorithm.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Raquel,,Malumbres
| | Sample_contact_email | rmalumbres@yahoo.com
| | Sample_contact_phone | +34 948194700
| | Sample_contact_laboratory | Molecular Oncology
| | Sample_contact_department | Oncology
| | Sample_contact_institute | University of Navarra/ Center for Applied Medical Research
| | Sample_contact_address | Avenida Pio XII 55
| | Sample_contact_city | Pamplona
| | Sample_contact_state | Navarra
| | Sample_contact_zip/postal_code | 31008
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1035nnn/GSM1035303/suppl/GSM1035303_RL.CEL.gz
| | Sample_series_id | GSE42203
| | Sample_series_id | GSE42204
| | Sample_data_row_count | 54675
| | |
|
GSM1035304 | GPL570 |
|
MD-901
|
Diffuse large B-cell lymphoma cell line MD901
|
cell line: MD901
cell type: diffuse large B-cell lymphoma (DLBCL) cells
tumor subtype: activated B-cell like
|
Gene expression data from a DLBCL cell line.
|
| Sample_geo_accession | GSM1035304
| | Sample_status | Public on Nov 10 2012
| | Sample_submission_date | Nov 09 2012
| | Sample_last_update_date | Nov 10 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | No treatment was performed.
| | Sample_growth_protocol_ch1 | Cells were grown in RPMI 1640 supplemented with 10% fetal bovine serum, 100 units/mL of penicillin and 100 mg/mL of streptomycin at 37ºC and 5% CO2.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The cells were harvested with TRIzol Reagent (Invitrogen) and the RNA was extracted according to the manufacturer's instructions. As a last step of the extraction procedure, the RNA was purified with the RNeasy Mini-kit (Qiagen, Hilden, Germany).
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | The cDNA was prepared from 2 microg total RNA using the One-Cycle cDNA Synthesis kit from Affymetrix. This cDNA was used for synthesizing the cRNA using the IVT labeling kit (Affymetrix). The synthesized cRNA was purified with the GeneChip Sample Cleanup Module (Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized to the Affymetrix HG-U133 Plus 2.0 chip according to the protocols provided by the manufacturer.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 from Affymetrix.
| | Sample_data_processing | Data were normalized with Bioconductor software using the RMA algorithm.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Raquel,,Malumbres
| | Sample_contact_email | rmalumbres@yahoo.com
| | Sample_contact_phone | +34 948194700
| | Sample_contact_laboratory | Molecular Oncology
| | Sample_contact_department | Oncology
| | Sample_contact_institute | University of Navarra/ Center for Applied Medical Research
| | Sample_contact_address | Avenida Pio XII 55
| | Sample_contact_city | Pamplona
| | Sample_contact_state | Navarra
| | Sample_contact_zip/postal_code | 31008
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1035nnn/GSM1035304/suppl/GSM1035304_MD_901.CEL.gz
| | Sample_series_id | GSE42203
| | Sample_series_id | GSE42204
| | Sample_data_row_count | 54675
| | |
|
GSM1035305 | GPL570 |
|
RIVA
|
Diffuse large B-cell lymphoma cell line RIVA
|
cell line: RIVA
cell type: diffuse large B-cell lymphoma (DLBCL) cells
tumor subtype: activated B-cell like
|
Gene expression data from a DLBCL cell line.
|
| Sample_geo_accession | GSM1035305
| | Sample_status | Public on Nov 10 2012
| | Sample_submission_date | Nov 09 2012
| | Sample_last_update_date | Nov 10 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | No treatment was performed.
| | Sample_growth_protocol_ch1 | Cells were grown in RPMI 1640 supplemented with 10% fetal bovine serum, 100 units/mL of penicillin and 100 mg/mL of streptomycin at 37ºC and 5% CO2.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The cells were harvested with TRIzol Reagent (Invitrogen) and the RNA was extracted according to the manufacturer's instructions. As a last step of the extraction procedure, the RNA was purified with the RNeasy Mini-kit (Qiagen, Hilden, Germany).
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | The cDNA was prepared from 2 microg total RNA using the One-Cycle cDNA Synthesis kit from Affymetrix. This cDNA was used for synthesizing the cRNA using the IVT labeling kit (Affymetrix). The synthesized cRNA was purified with the GeneChip Sample Cleanup Module (Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized to the Affymetrix HG-U133 Plus 2.0 chip according to the protocols provided by the manufacturer.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 from Affymetrix.
| | Sample_data_processing | Data were normalized with Bioconductor software using the RMA algorithm.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Raquel,,Malumbres
| | Sample_contact_email | rmalumbres@yahoo.com
| | Sample_contact_phone | +34 948194700
| | Sample_contact_laboratory | Molecular Oncology
| | Sample_contact_department | Oncology
| | Sample_contact_institute | University of Navarra/ Center for Applied Medical Research
| | Sample_contact_address | Avenida Pio XII 55
| | Sample_contact_city | Pamplona
| | Sample_contact_state | Navarra
| | Sample_contact_zip/postal_code | 31008
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1035nnn/GSM1035305/suppl/GSM1035305_RIVA.CEL.gz
| | Sample_series_id | GSE42203
| | Sample_series_id | GSE42204
| | Sample_data_row_count | 54675
| | |
|
GSM1035306 | GPL570 |
|
OZ
|
Diffuse large B-cell lymphoma cell line OZ
|
cell line: OZ
cell type: diffuse large B-cell lymphoma (DLBCL) cells
|
Gene expression data from a DLBCL cell line.
|
| Sample_geo_accession | GSM1035306
| | Sample_status | Public on Nov 10 2012
| | Sample_submission_date | Nov 09 2012
| | Sample_last_update_date | Nov 10 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | No treatment was performed.
| | Sample_growth_protocol_ch1 | Cells were grown in RPMI 1640 supplemented with 10% fetal bovine serum, 100 units/mL of penicillin and 100 mg/mL of streptomycin at 37ºC and 5% CO2.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The cells were harvested with TRIzol Reagent (Invitrogen) and the RNA was extracted according to the manufacturer's instructions. As a last step of the extraction procedure, the RNA was purified with the RNeasy Mini-kit (Qiagen, Hilden, Germany).
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | The cDNA was prepared from 2 microg total RNA using the One-Cycle cDNA Synthesis kit from Affymetrix. This cDNA was used for synthesizing the cRNA using the IVT labeling kit (Affymetrix). The synthesized cRNA was purified with the GeneChip Sample Cleanup Module (Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized to the Affymetrix HG-U133 Plus 2.0 chip according to the protocols provided by the manufacturer.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 from Affymetrix.
| | Sample_data_processing | Data were normalized with Bioconductor software using the RMA algorithm.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Raquel,,Malumbres
| | Sample_contact_email | rmalumbres@yahoo.com
| | Sample_contact_phone | +34 948194700
| | Sample_contact_laboratory | Molecular Oncology
| | Sample_contact_department | Oncology
| | Sample_contact_institute | University of Navarra/ Center for Applied Medical Research
| | Sample_contact_address | Avenida Pio XII 55
| | Sample_contact_city | Pamplona
| | Sample_contact_state | Navarra
| | Sample_contact_zip/postal_code | 31008
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1035nnn/GSM1035306/suppl/GSM1035306_OZ.CEL.gz
| | Sample_series_id | GSE42203
| | Sample_series_id | GSE42204
| | Sample_data_row_count | 54675
| | |
|
GSM1035307 | GPL570 |
|
WSU-NHL
|
Diffuse large B-cell lymphoma cell line WSU-NHL
|
cell line: WSU-NHL
cell type: diffuse large B-cell lymphoma (DLBCL) cells
|
Gene expression data from a DLBCL cell line.
|
| Sample_geo_accession | GSM1035307
| | Sample_status | Public on Nov 10 2012
| | Sample_submission_date | Nov 09 2012
| | Sample_last_update_date | Nov 10 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | No treatment was performed.
| | Sample_growth_protocol_ch1 | Cells were grown in RPMI 1640 supplemented with 10% fetal bovine serum, 100 units/mL of penicillin and 100 mg/mL of streptomycin at 37ºC and 5% CO2.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The cells were harvested with TRIzol Reagent (Invitrogen) and the RNA was extracted according to the manufacturer's instructions. As a last step of the extraction procedure, the RNA was purified with the RNeasy Mini-kit (Qiagen, Hilden, Germany).
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | The cDNA was prepared from 2 microg total RNA using the One-Cycle cDNA Synthesis kit from Affymetrix. This cDNA was used for synthesizing the cRNA using the IVT labeling kit (Affymetrix). The synthesized cRNA was purified with the GeneChip Sample Cleanup Module (Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized to the Affymetrix HG-U133 Plus 2.0 chip according to the protocols provided by the manufacturer.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 from Affymetrix.
| | Sample_data_processing | Data were normalized with Bioconductor software using the RMA algorithm.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Raquel,,Malumbres
| | Sample_contact_email | rmalumbres@yahoo.com
| | Sample_contact_phone | +34 948194700
| | Sample_contact_laboratory | Molecular Oncology
| | Sample_contact_department | Oncology
| | Sample_contact_institute | University of Navarra/ Center for Applied Medical Research
| | Sample_contact_address | Avenida Pio XII 55
| | Sample_contact_city | Pamplona
| | Sample_contact_state | Navarra
| | Sample_contact_zip/postal_code | 31008
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1035nnn/GSM1035307/suppl/GSM1035307_WSU_NHL.CEL.gz
| | Sample_series_id | GSE42203
| | Sample_series_id | GSE42204
| | Sample_data_row_count | 54675
| | |
|
GSM1035308 | GPL570 |
|
WSU-DLCL-2
|
Diffuse large B-cell lymphoma cell line WSU-DLCL2
|
cell line: WSU-DLCL2
cell type: diffuse large B-cell lymphoma (DLBCL) cells
tumor subtype: germinal center B-cell like
|
Gene expression data from a DLBCL cell line.
|
| Sample_geo_accession | GSM1035308
| | Sample_status | Public on Nov 10 2012
| | Sample_submission_date | Nov 09 2012
| | Sample_last_update_date | Nov 10 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | No treatment was performed.
| | Sample_growth_protocol_ch1 | Cells were grown in RPMI 1640 supplemented with 10% fetal bovine serum, 100 units/mL of penicillin and 100 mg/mL of streptomycin at 37ºC and 5% CO2.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The cells were harvested with TRIzol Reagent (Invitrogen) and the RNA was extracted according to the manufacturer's instructions. As a last step of the extraction procedure, the RNA was purified with the RNeasy Mini-kit (Qiagen, Hilden, Germany).
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | The cDNA was prepared from 2 microg total RNA using the One-Cycle cDNA Synthesis kit from Affymetrix. This cDNA was used for synthesizing the cRNA using the IVT labeling kit (Affymetrix). The synthesized cRNA was purified with the GeneChip Sample Cleanup Module (Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized to the Affymetrix HG-U133 Plus 2.0 chip according to the protocols provided by the manufacturer.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 from Affymetrix.
| | Sample_data_processing | Data were normalized with Bioconductor software using the RMA algorithm.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Raquel,,Malumbres
| | Sample_contact_email | rmalumbres@yahoo.com
| | Sample_contact_phone | +34 948194700
| | Sample_contact_laboratory | Molecular Oncology
| | Sample_contact_department | Oncology
| | Sample_contact_institute | University of Navarra/ Center for Applied Medical Research
| | Sample_contact_address | Avenida Pio XII 55
| | Sample_contact_city | Pamplona
| | Sample_contact_state | Navarra
| | Sample_contact_zip/postal_code | 31008
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1035nnn/GSM1035308/suppl/GSM1035308_WSU_DLCL_2.CEL.gz
| | Sample_series_id | GSE42203
| | Sample_series_id | GSE42204
| | Sample_data_row_count | 54675
| | |
|
GSM1035309 | GPL570 |
|
VAL
|
Diffuse large B-cell lymphoma cell line VAL
|
cell line: VAL
cell type: diffuse large B-cell lymphoma (DLBCL) cells
|
Gene expression data from a DLBCL cell line.
|
| Sample_geo_accession | GSM1035309
| | Sample_status | Public on Nov 10 2012
| | Sample_submission_date | Nov 09 2012
| | Sample_last_update_date | Nov 10 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | No treatment was performed.
| | Sample_growth_protocol_ch1 | Cells were grown in RPMI 1640 supplemented with 10% fetal bovine serum, 100 units/mL of penicillin and 100 mg/mL of streptomycin at 37ºC and 5% CO2.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The cells were harvested with TRIzol Reagent (Invitrogen) and the RNA was extracted according to the manufacturer's instructions. As a last step of the extraction procedure, the RNA was purified with the RNeasy Mini-kit (Qiagen, Hilden, Germany).
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | The cDNA was prepared from 2 microg total RNA using the One-Cycle cDNA Synthesis kit from Affymetrix. This cDNA was used for synthesizing the cRNA using the IVT labeling kit (Affymetrix). The synthesized cRNA was purified with the GeneChip Sample Cleanup Module (Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized to the Affymetrix HG-U133 Plus 2.0 chip according to the protocols provided by the manufacturer.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 from Affymetrix.
| | Sample_data_processing | Data were normalized with Bioconductor software using the RMA algorithm.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Raquel,,Malumbres
| | Sample_contact_email | rmalumbres@yahoo.com
| | Sample_contact_phone | +34 948194700
| | Sample_contact_laboratory | Molecular Oncology
| | Sample_contact_department | Oncology
| | Sample_contact_institute | University of Navarra/ Center for Applied Medical Research
| | Sample_contact_address | Avenida Pio XII 55
| | Sample_contact_city | Pamplona
| | Sample_contact_state | Navarra
| | Sample_contact_zip/postal_code | 31008
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1035nnn/GSM1035309/suppl/GSM1035309_VAL.CEL.gz
| | Sample_series_id | GSE42203
| | Sample_series_id | GSE42204
| | Sample_data_row_count | 54675
| | |
|
GSM1035310 | GPL570 |
|
SU-DHL-16
|
Diffuse large B-cell lymphoma cell line SUDHL16
|
cell line: SUDHL16
cell type: diffuse large B-cell lymphoma (DLBCL) cells
tumor subtype: germinal center B-cell like
|
Gene expression data from a DLBCL cell line.
|
| Sample_geo_accession | GSM1035310
| | Sample_status | Public on Nov 10 2012
| | Sample_submission_date | Nov 09 2012
| | Sample_last_update_date | Nov 10 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | No treatment was performed.
| | Sample_growth_protocol_ch1 | Cells were grown in RPMI 1640 supplemented with 10% fetal bovine serum, 100 units/mL of penicillin and 100 mg/mL of streptomycin at 37ºC and 5% CO2.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The cells were harvested with TRIzol Reagent (Invitrogen) and the RNA was extracted according to the manufacturer's instructions. As a last step of the extraction procedure, the RNA was purified with the RNeasy Mini-kit (Qiagen, Hilden, Germany).
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | The cDNA was prepared from 2 microg total RNA using the One-Cycle cDNA Synthesis kit from Affymetrix. This cDNA was used for synthesizing the cRNA using the IVT labeling kit (Affymetrix). The synthesized cRNA was purified with the GeneChip Sample Cleanup Module (Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized to the Affymetrix HG-U133 Plus 2.0 chip according to the protocols provided by the manufacturer.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 from Affymetrix.
| | Sample_data_processing | Data were normalized with Bioconductor software using the RMA algorithm.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Raquel,,Malumbres
| | Sample_contact_email | rmalumbres@yahoo.com
| | Sample_contact_phone | +34 948194700
| | Sample_contact_laboratory | Molecular Oncology
| | Sample_contact_department | Oncology
| | Sample_contact_institute | University of Navarra/ Center for Applied Medical Research
| | Sample_contact_address | Avenida Pio XII 55
| | Sample_contact_city | Pamplona
| | Sample_contact_state | Navarra
| | Sample_contact_zip/postal_code | 31008
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1035nnn/GSM1035310/suppl/GSM1035310_SU_DHL_16.CEL.gz
| | Sample_series_id | GSE42203
| | Sample_series_id | GSE42204
| | Sample_data_row_count | 54675
| | |
|
GSM1035311 | GPL570 |
|
SU-DHL-6
|
Diffuse large B-cell lymphoma cell line SUDHL6
|
cell line: SUDHL6
cell type: diffuse large B-cell lymphoma (DLBCL) cells
|
Gene expression data from a DLBCL cell line.
|
| Sample_geo_accession | GSM1035311
| | Sample_status | Public on Nov 10 2012
| | Sample_submission_date | Nov 09 2012
| | Sample_last_update_date | Nov 10 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | No treatment was performed.
| | Sample_growth_protocol_ch1 | Cells were grown in RPMI 1640 supplemented with 10% fetal bovine serum, 100 units/mL of penicillin and 100 mg/mL of streptomycin at 37ºC and 5% CO2.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The cells were harvested with TRIzol Reagent (Invitrogen) and the RNA was extracted according to the manufacturer's instructions. As a last step of the extraction procedure, the RNA was purified with the RNeasy Mini-kit (Qiagen, Hilden, Germany).
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | The cDNA was prepared from 2 microg total RNA using the One-Cycle cDNA Synthesis kit from Affymetrix. This cDNA was used for synthesizing the cRNA using the IVT labeling kit (Affymetrix). The synthesized cRNA was purified with the GeneChip Sample Cleanup Module (Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized to the Affymetrix HG-U133 Plus 2.0 chip according to the protocols provided by the manufacturer.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 from Affymetrix.
| | Sample_data_processing | Data were normalized with Bioconductor software using the RMA algorithm.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Raquel,,Malumbres
| | Sample_contact_email | rmalumbres@yahoo.com
| | Sample_contact_phone | +34 948194700
| | Sample_contact_laboratory | Molecular Oncology
| | Sample_contact_department | Oncology
| | Sample_contact_institute | University of Navarra/ Center for Applied Medical Research
| | Sample_contact_address | Avenida Pio XII 55
| | Sample_contact_city | Pamplona
| | Sample_contact_state | Navarra
| | Sample_contact_zip/postal_code | 31008
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1035nnn/GSM1035311/suppl/GSM1035311_SU_DHL_6.CEL.gz
| | Sample_series_id | GSE42203
| | Sample_series_id | GSE42204
| | Sample_data_row_count | 54675
| | |
|
GSM1035312 | GPL570 |
|
SU-DHL-10
|
Diffuse large B-cell lymphoma cell line SUDHL10
|
cell line: SUDHL10
cell type: diffuse large B-cell lymphoma (DLBCL) cells
tumor subtype: germinal center B-cell like
|
Gene expression data from a DLBCL cell line.
|
| Sample_geo_accession | GSM1035312
| | Sample_status | Public on Nov 10 2012
| | Sample_submission_date | Nov 09 2012
| | Sample_last_update_date | Nov 10 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | No treatment was performed.
| | Sample_growth_protocol_ch1 | Cells were grown in RPMI 1640 supplemented with 10% fetal bovine serum, 100 units/mL of penicillin and 100 mg/mL of streptomycin at 37ºC and 5% CO2.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The cells were harvested with TRIzol Reagent (Invitrogen) and the RNA was extracted according to the manufacturer's instructions. As a last step of the extraction procedure, the RNA was purified with the RNeasy Mini-kit (Qiagen, Hilden, Germany).
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | The cDNA was prepared from 2 microg total RNA using the One-Cycle cDNA Synthesis kit from Affymetrix. This cDNA was used for synthesizing the cRNA using the IVT labeling kit (Affymetrix). The synthesized cRNA was purified with the GeneChip Sample Cleanup Module (Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized to the Affymetrix HG-U133 Plus 2.0 chip according to the protocols provided by the manufacturer.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 from Affymetrix.
| | Sample_data_processing | Data were normalized with Bioconductor software using the RMA algorithm.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Raquel,,Malumbres
| | Sample_contact_email | rmalumbres@yahoo.com
| | Sample_contact_phone | +34 948194700
| | Sample_contact_laboratory | Molecular Oncology
| | Sample_contact_department | Oncology
| | Sample_contact_institute | University of Navarra/ Center for Applied Medical Research
| | Sample_contact_address | Avenida Pio XII 55
| | Sample_contact_city | Pamplona
| | Sample_contact_state | Navarra
| | Sample_contact_zip/postal_code | 31008
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1035nnn/GSM1035312/suppl/GSM1035312_SU_DHL_10.CEL.gz
| | Sample_series_id | GSE42203
| | Sample_series_id | GSE42204
| | Sample_data_row_count | 54675
| | |
|
GSM1035313 | GPL570 |
|
KARPAS-422
|
Diffuse large B-cell lymphoma cell line KARPAS-422
|
cell line: KARPAS-422
cell type: diffuse large B-cell lymphoma (DLBCL) cells
tumor subtype: germinal center B-cell like
|
Gene expression data from a DLBCL cell line.
|
| Sample_geo_accession | GSM1035313
| | Sample_status | Public on Nov 10 2012
| | Sample_submission_date | Nov 09 2012
| | Sample_last_update_date | Nov 10 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | No treatment was performed.
| | Sample_growth_protocol_ch1 | Cells were grown in RPMI 1640 supplemented with 10% fetal bovine serum, 100 units/mL of penicillin and 100 mg/mL of streptomycin at 37ºC and 5% CO2.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The cells were harvested with TRIzol Reagent (Invitrogen) and the RNA was extracted according to the manufacturer's instructions. As a last step of the extraction procedure, the RNA was purified with the RNeasy Mini-kit (Qiagen, Hilden, Germany).
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | The cDNA was prepared from 2 microg total RNA using the One-Cycle cDNA Synthesis kit from Affymetrix. This cDNA was used for synthesizing the cRNA using the IVT labeling kit (Affymetrix). The synthesized cRNA was purified with the GeneChip Sample Cleanup Module (Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized to the Affymetrix HG-U133 Plus 2.0 chip according to the protocols provided by the manufacturer.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 from Affymetrix.
| | Sample_data_processing | Data were normalized with Bioconductor software using the RMA algorithm.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Raquel,,Malumbres
| | Sample_contact_email | rmalumbres@yahoo.com
| | Sample_contact_phone | +34 948194700
| | Sample_contact_laboratory | Molecular Oncology
| | Sample_contact_department | Oncology
| | Sample_contact_institute | University of Navarra/ Center for Applied Medical Research
| | Sample_contact_address | Avenida Pio XII 55
| | Sample_contact_city | Pamplona
| | Sample_contact_state | Navarra
| | Sample_contact_zip/postal_code | 31008
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1035nnn/GSM1035313/suppl/GSM1035313_KARPAS_422.CEL.gz
| | Sample_series_id | GSE42203
| | Sample_series_id | GSE42204
| | Sample_data_row_count | 54675
| | |
|
GSM1035314 | GPL570 |
|
HT
|
Diffuse large B-cell lymphoma cell line HT
|
cell line: HT
cell type: diffuse large B-cell lymphoma (DLBCL) cells
tumor subtype: germinal center B-cell like
|
Gene expression data from a DLBCL cell line.
|
| Sample_geo_accession | GSM1035314
| | Sample_status | Public on Nov 10 2012
| | Sample_submission_date | Nov 09 2012
| | Sample_last_update_date | Nov 10 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | No treatment was performed.
| | Sample_growth_protocol_ch1 | Cells were grown in RPMI 1640 supplemented with 10% fetal bovine serum, 100 units/mL of penicillin and 100 mg/mL of streptomycin at 37ºC and 5% CO2.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The cells were harvested with TRIzol Reagent (Invitrogen) and the RNA was extracted according to the manufacturer's instructions. As a last step of the extraction procedure, the RNA was purified with the RNeasy Mini-kit (Qiagen, Hilden, Germany).
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | The cDNA was prepared from 2 microg total RNA using the One-Cycle cDNA Synthesis kit from Affymetrix. This cDNA was used for synthesizing the cRNA using the IVT labeling kit (Affymetrix). The synthesized cRNA was purified with the GeneChip Sample Cleanup Module (Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized to the Affymetrix HG-U133 Plus 2.0 chip according to the protocols provided by the manufacturer.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 from Affymetrix.
| | Sample_data_processing | Data were normalized with Bioconductor software using the RMA algorithm.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Raquel,,Malumbres
| | Sample_contact_email | rmalumbres@yahoo.com
| | Sample_contact_phone | +34 948194700
| | Sample_contact_laboratory | Molecular Oncology
| | Sample_contact_department | Oncology
| | Sample_contact_institute | University of Navarra/ Center for Applied Medical Research
| | Sample_contact_address | Avenida Pio XII 55
| | Sample_contact_city | Pamplona
| | Sample_contact_state | Navarra
| | Sample_contact_zip/postal_code | 31008
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1035nnn/GSM1035314/suppl/GSM1035314_HT.CEL.gz
| | Sample_series_id | GSE42203
| | Sample_series_id | GSE42204
| | Sample_data_row_count | 54675
| | |
|
GSM1035315 | GPL570 |
|
RCK-8
|
Diffuse large B-cell lymphoma cell line RCK8
|
cell line: RCK8
cell type: diffuse large B-cell lymphoma (DLBCL) cells
|
Gene expression data from a DLBCL cell line.
|
| Sample_geo_accession | GSM1035315
| | Sample_status | Public on Nov 10 2012
| | Sample_submission_date | Nov 09 2012
| | Sample_last_update_date | Nov 10 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | No treatment was performed.
| | Sample_growth_protocol_ch1 | Cells were grown in RPMI 1640 supplemented with 10% fetal bovine serum, 100 units/mL of penicillin and 100 mg/mL of streptomycin at 37ºC and 5% CO2.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The cells were harvested with TRIzol Reagent (Invitrogen) and the RNA was extracted according to the manufacturer's instructions. As a last step of the extraction procedure, the RNA was purified with the RNeasy Mini-kit (Qiagen, Hilden, Germany).
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | The cDNA was prepared from 2 microg total RNA using the One-Cycle cDNA Synthesis kit from Affymetrix. This cDNA was used for synthesizing the cRNA using the IVT labeling kit (Affymetrix). The synthesized cRNA was purified with the GeneChip Sample Cleanup Module (Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized to the Affymetrix HG-U133 Plus 2.0 chip according to the protocols provided by the manufacturer.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 from Affymetrix.
| | Sample_data_processing | Data were normalized with Bioconductor software using the RMA algorithm.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Raquel,,Malumbres
| | Sample_contact_email | rmalumbres@yahoo.com
| | Sample_contact_phone | +34 948194700
| | Sample_contact_laboratory | Molecular Oncology
| | Sample_contact_department | Oncology
| | Sample_contact_institute | University of Navarra/ Center for Applied Medical Research
| | Sample_contact_address | Avenida Pio XII 55
| | Sample_contact_city | Pamplona
| | Sample_contact_state | Navarra
| | Sample_contact_zip/postal_code | 31008
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1035nnn/GSM1035315/suppl/GSM1035315_RCK_8.CEL.gz
| | Sample_series_id | GSE42203
| | Sample_series_id | GSE42204
| | Sample_data_row_count | 54675
| | |
|
GSM1035316 | GPL570 |
|
SU-DHL-8
|
Diffuse large B-cell lymphoma cell line SUDHL8
|
cell line: SUDHL8
cell type: diffuse large B-cell lymphoma (DLBCL) cells
tumor subtype: activated B-cell like
|
Gene expression data from a DLBCL cell line.
|
| Sample_geo_accession | GSM1035316
| | Sample_status | Public on Nov 10 2012
| | Sample_submission_date | Nov 09 2012
| | Sample_last_update_date | Nov 10 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | No treatment was performed.
| | Sample_growth_protocol_ch1 | Cells were grown in RPMI 1640 supplemented with 10% fetal bovine serum, 100 units/mL of penicillin and 100 mg/mL of streptomycin at 37ºC and 5% CO2.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The cells were harvested with TRIzol Reagent (Invitrogen) and the RNA was extracted according to the manufacturer's instructions. As a last step of the extraction procedure, the RNA was purified with the RNeasy Mini-kit (Qiagen, Hilden, Germany).
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | The cDNA was prepared from 2 microg total RNA using the One-Cycle cDNA Synthesis kit from Affymetrix. This cDNA was used for synthesizing the cRNA using the IVT labeling kit (Affymetrix). The synthesized cRNA was purified with the GeneChip Sample Cleanup Module (Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized to the Affymetrix HG-U133 Plus 2.0 chip according to the protocols provided by the manufacturer.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 from Affymetrix.
| | Sample_data_processing | Data were normalized with Bioconductor software using the RMA algorithm.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Raquel,,Malumbres
| | Sample_contact_email | rmalumbres@yahoo.com
| | Sample_contact_phone | +34 948194700
| | Sample_contact_laboratory | Molecular Oncology
| | Sample_contact_department | Oncology
| | Sample_contact_institute | University of Navarra/ Center for Applied Medical Research
| | Sample_contact_address | Avenida Pio XII 55
| | Sample_contact_city | Pamplona
| | Sample_contact_state | Navarra
| | Sample_contact_zip/postal_code | 31008
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1035nnn/GSM1035316/suppl/GSM1035316_SU_DHL_8.CEL.gz
| | Sample_series_id | GSE42203
| | Sample_series_id | GSE42204
| | Sample_data_row_count | 54675
| | |
|
GSM1035317 | GPL570 |
|
SU-DHL-5
|
Diffuse large B-cell lymphoma cell line SUDHL5
|
cell line: SUDHL5
cell type: diffuse large B-cell lymphoma (DLBCL) cells
tumor subtype: germinal center B-cell like
|
Gene expression data from a DLBCL cell line.
|
| Sample_geo_accession | GSM1035317
| | Sample_status | Public on Nov 10 2012
| | Sample_submission_date | Nov 09 2012
| | Sample_last_update_date | Nov 10 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | No treatment was performed.
| | Sample_growth_protocol_ch1 | Cells were grown in RPMI 1640 supplemented with 10% fetal bovine serum, 100 units/mL of penicillin and 100 mg/mL of streptomycin at 37ºC and 5% CO2.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The cells were harvested with TRIzol Reagent (Invitrogen) and the RNA was extracted according to the manufacturer's instructions. As a last step of the extraction procedure, the RNA was purified with the RNeasy Mini-kit (Qiagen, Hilden, Germany).
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | The cDNA was prepared from 2 microg total RNA using the One-Cycle cDNA Synthesis kit from Affymetrix. This cDNA was used for synthesizing the cRNA using the IVT labeling kit (Affymetrix). The synthesized cRNA was purified with the GeneChip Sample Cleanup Module (Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized to the Affymetrix HG-U133 Plus 2.0 chip according to the protocols provided by the manufacturer.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 from Affymetrix.
| | Sample_data_processing | Data were normalized with Bioconductor software using the RMA algorithm.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Raquel,,Malumbres
| | Sample_contact_email | rmalumbres@yahoo.com
| | Sample_contact_phone | +34 948194700
| | Sample_contact_laboratory | Molecular Oncology
| | Sample_contact_department | Oncology
| | Sample_contact_institute | University of Navarra/ Center for Applied Medical Research
| | Sample_contact_address | Avenida Pio XII 55
| | Sample_contact_city | Pamplona
| | Sample_contact_state | Navarra
| | Sample_contact_zip/postal_code | 31008
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1035nnn/GSM1035317/suppl/GSM1035317_SU_DHL_5.CEL.gz
| | Sample_series_id | GSE42203
| | Sample_series_id | GSE42204
| | Sample_data_row_count | 54675
| | |
|
GSM1035318 | GPL570 |
|
KARPAS-231
|
Diffuse large B-cell lymphoma cell line KARPAS-231
|
cell line: KARPAS-231
cell type: diffuse large B-cell lymphoma (DLBCL) cells
|
Gene expression data from a DLBCL cell line.
|
| Sample_geo_accession | GSM1035318
| | Sample_status | Public on Nov 10 2012
| | Sample_submission_date | Nov 09 2012
| | Sample_last_update_date | Nov 10 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | No treatment was performed.
| | Sample_growth_protocol_ch1 | Cells were grown in RPMI 1640 supplemented with 10% fetal bovine serum, 100 units/mL of penicillin and 100 mg/mL of streptomycin at 37ºC and 5% CO2.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The cells were harvested with TRIzol Reagent (Invitrogen) and the RNA was extracted according to the manufacturer's instructions. As a last step of the extraction procedure, the RNA was purified with the RNeasy Mini-kit (Qiagen, Hilden, Germany).
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | The cDNA was prepared from 2 microg total RNA using the One-Cycle cDNA Synthesis kit from Affymetrix. This cDNA was used for synthesizing the cRNA using the IVT labeling kit (Affymetrix). The synthesized cRNA was purified with the GeneChip Sample Cleanup Module (Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized to the Affymetrix HG-U133 Plus 2.0 chip according to the protocols provided by the manufacturer.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 from Affymetrix.
| | Sample_data_processing | Data were normalized with Bioconductor software using the RMA algorithm.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Raquel,,Malumbres
| | Sample_contact_email | rmalumbres@yahoo.com
| | Sample_contact_phone | +34 948194700
| | Sample_contact_laboratory | Molecular Oncology
| | Sample_contact_department | Oncology
| | Sample_contact_institute | University of Navarra/ Center for Applied Medical Research
| | Sample_contact_address | Avenida Pio XII 55
| | Sample_contact_city | Pamplona
| | Sample_contact_state | Navarra
| | Sample_contact_zip/postal_code | 31008
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1035nnn/GSM1035318/suppl/GSM1035318_KARPAS_231.CEL.gz
| | Sample_series_id | GSE42203
| | Sample_series_id | GSE42204
| | Sample_data_row_count | 54675
| | |
|
GSM1035319 | GPL570 |
|
OCI-Ly-8
|
Diffuse large B-cell lymphoma cell line OCI-Ly8
|
cell line: OCI-Ly8
cell type: diffuse large B-cell lymphoma (DLBCL) cells
|
Gene expression data from a DLBCL cell line.
|
| Sample_geo_accession | GSM1035319
| | Sample_status | Public on Nov 10 2012
| | Sample_submission_date | Nov 09 2012
| | Sample_last_update_date | Nov 10 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | No treatment was performed.
| | Sample_growth_protocol_ch1 | Cells were grown in RPMI 1640 supplemented with 10% fetal bovine serum, 100 units/mL of penicillin and 100 mg/mL of streptomycin at 37ºC and 5% CO2.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The cells were harvested with TRIzol Reagent (Invitrogen) and the RNA was extracted according to the manufacturer's instructions. As a last step of the extraction procedure, the RNA was purified with the RNeasy Mini-kit (Qiagen, Hilden, Germany).
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | The cDNA was prepared from 2 microg total RNA using the One-Cycle cDNA Synthesis kit from Affymetrix. This cDNA was used for synthesizing the cRNA using the IVT labeling kit (Affymetrix). The synthesized cRNA was purified with the GeneChip Sample Cleanup Module (Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized to the Affymetrix HG-U133 Plus 2.0 chip according to the protocols provided by the manufacturer.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 from Affymetrix.
| | Sample_data_processing | Data were normalized with Bioconductor software using the RMA algorithm.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Raquel,,Malumbres
| | Sample_contact_email | rmalumbres@yahoo.com
| | Sample_contact_phone | +34 948194700
| | Sample_contact_laboratory | Molecular Oncology
| | Sample_contact_department | Oncology
| | Sample_contact_institute | University of Navarra/ Center for Applied Medical Research
| | Sample_contact_address | Avenida Pio XII 55
| | Sample_contact_city | Pamplona
| | Sample_contact_state | Navarra
| | Sample_contact_zip/postal_code | 31008
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1035nnn/GSM1035319/suppl/GSM1035319_OCI_Ly_8.CEL.gz
| | Sample_series_id | GSE42203
| | Sample_series_id | GSE42204
| | Sample_data_row_count | 54675
| | |
|
GSM1035320 | GPL570 |
|
NUDUL-1
|
Diffuse large B-cell lymphoma cell line NUDUL1
|
cell line: NUDUL1
cell type: diffuse large B-cell lymphoma (DLBCL) cells
|
Gene expression data from a DLBCL cell line.
|
| Sample_geo_accession | GSM1035320
| | Sample_status | Public on Nov 10 2012
| | Sample_submission_date | Nov 09 2012
| | Sample_last_update_date | Nov 10 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | No treatment was performed.
| | Sample_growth_protocol_ch1 | Cells were grown in RPMI 1640 supplemented with 10% fetal bovine serum, 100 units/mL of penicillin and 100 mg/mL of streptomycin at 37ºC and 5% CO2.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The cells were harvested with TRIzol Reagent (Invitrogen) and the RNA was extracted according to the manufacturer's instructions. As a last step of the extraction procedure, the RNA was purified with the RNeasy Mini-kit (Qiagen, Hilden, Germany).
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | The cDNA was prepared from 2 microg total RNA using the One-Cycle cDNA Synthesis kit from Affymetrix. This cDNA was used for synthesizing the cRNA using the IVT labeling kit (Affymetrix). The synthesized cRNA was purified with the GeneChip Sample Cleanup Module (Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized to the Affymetrix HG-U133 Plus 2.0 chip according to the protocols provided by the manufacturer.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 from Affymetrix.
| | Sample_data_processing | Data were normalized with Bioconductor software using the RMA algorithm.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Raquel,,Malumbres
| | Sample_contact_email | rmalumbres@yahoo.com
| | Sample_contact_phone | +34 948194700
| | Sample_contact_laboratory | Molecular Oncology
| | Sample_contact_department | Oncology
| | Sample_contact_institute | University of Navarra/ Center for Applied Medical Research
| | Sample_contact_address | Avenida Pio XII 55
| | Sample_contact_city | Pamplona
| | Sample_contact_state | Navarra
| | Sample_contact_zip/postal_code | 31008
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1035nnn/GSM1035320/suppl/GSM1035320_NUDUL_1.CEL.gz
| | Sample_series_id | GSE42203
| | Sample_series_id | GSE42204
| | Sample_data_row_count | 54675
| | |
|
GSM1035321 | GPL570 |
|
DB
|
Diffuse large B-cell lymphoma cell line DB
|
cell line: DB
cell type: diffuse large B-cell lymphoma (DLBCL) cells
tumor subtype: germinal center B-cell like
|
Gene expression data from a DLBCL cell line.
|
| Sample_geo_accession | GSM1035321
| | Sample_status | Public on Nov 10 2012
| | Sample_submission_date | Nov 09 2012
| | Sample_last_update_date | Nov 10 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | No treatment was performed.
| | Sample_growth_protocol_ch1 | Cells were grown in RPMI 1640 supplemented with 10% fetal bovine serum, 100 units/mL of penicillin and 100 mg/mL of streptomycin at 37ºC and 5% CO2.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The cells were harvested with TRIzol Reagent (Invitrogen) and the RNA was extracted according to the manufacturer's instructions. As a last step of the extraction procedure, the RNA was purified with the RNeasy Mini-kit (Qiagen, Hilden, Germany).
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | The cDNA was prepared from 2 microg total RNA using the One-Cycle cDNA Synthesis kit from Affymetrix. This cDNA was used for synthesizing the cRNA using the IVT labeling kit (Affymetrix). The synthesized cRNA was purified with the GeneChip Sample Cleanup Module (Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized to the Affymetrix HG-U133 Plus 2.0 chip according to the protocols provided by the manufacturer.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 from Affymetrix.
| | Sample_data_processing | Data were normalized with Bioconductor software using the RMA algorithm.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Raquel,,Malumbres
| | Sample_contact_email | rmalumbres@yahoo.com
| | Sample_contact_phone | +34 948194700
| | Sample_contact_laboratory | Molecular Oncology
| | Sample_contact_department | Oncology
| | Sample_contact_institute | University of Navarra/ Center for Applied Medical Research
| | Sample_contact_address | Avenida Pio XII 55
| | Sample_contact_city | Pamplona
| | Sample_contact_state | Navarra
| | Sample_contact_zip/postal_code | 31008
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1035nnn/GSM1035321/suppl/GSM1035321_DB.CEL.gz
| | Sample_series_id | GSE42203
| | Sample_series_id | GSE42204
| | Sample_data_row_count | 54675
| | |
|
GSM1035322 | GPL570 |
|
SU-DHL-4
|
Diffuse large B-cell lymphoma cell line SUDHL4
|
cell line: SUDHL4
cell type: diffuse large B-cell lymphoma (DLBCL) cells
tumor subtype: germinal center B-cell like
|
Gene expression data from a DLBCL cell line.
|
| Sample_geo_accession | GSM1035322
| | Sample_status | Public on Nov 10 2012
| | Sample_submission_date | Nov 09 2012
| | Sample_last_update_date | Nov 10 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | No treatment was performed.
| | Sample_growth_protocol_ch1 | Cells were grown in RPMI 1640 supplemented with 10% fetal bovine serum, 100 units/mL of penicillin and 100 mg/mL of streptomycin at 37ºC and 5% CO2.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The cells were harvested with TRIzol Reagent (Invitrogen) and the RNA was extracted according to the manufacturer's instructions. As a last step of the extraction procedure, the RNA was purified with the RNeasy Mini-kit (Qiagen, Hilden, Germany).
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | The cDNA was prepared from 2 microg total RNA using the One-Cycle cDNA Synthesis kit from Affymetrix. This cDNA was used for synthesizing the cRNA using the IVT labeling kit (Affymetrix). The synthesized cRNA was purified with the GeneChip Sample Cleanup Module (Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized to the Affymetrix HG-U133 Plus 2.0 chip according to the protocols provided by the manufacturer.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 from Affymetrix.
| | Sample_data_processing | Data were normalized with Bioconductor software using the RMA algorithm.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Raquel,,Malumbres
| | Sample_contact_email | rmalumbres@yahoo.com
| | Sample_contact_phone | +34 948194700
| | Sample_contact_laboratory | Molecular Oncology
| | Sample_contact_department | Oncology
| | Sample_contact_institute | University of Navarra/ Center for Applied Medical Research
| | Sample_contact_address | Avenida Pio XII 55
| | Sample_contact_city | Pamplona
| | Sample_contact_state | Navarra
| | Sample_contact_zip/postal_code | 31008
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1035nnn/GSM1035322/suppl/GSM1035322_SU_DHL_4.CEL.gz
| | Sample_series_id | GSE42203
| | Sample_series_id | GSE42204
| | Sample_data_row_count | 54675
| | |
|
GSM1035323 | GPL570 |
|
ROS-50
|
Diffuse large B-cell lymphoma cell line ROS50
|
cell line: ROS50
cell type: diffuse large B-cell lymphoma (DLBCL) cells
|
Gene expression data from a DLBCL cell line.
|
| Sample_geo_accession | GSM1035323
| | Sample_status | Public on Nov 10 2012
| | Sample_submission_date | Nov 09 2012
| | Sample_last_update_date | Nov 10 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | No treatment was performed.
| | Sample_growth_protocol_ch1 | Cells were grown in RPMI 1640 supplemented with 10% fetal bovine serum, 100 units/mL of penicillin and 100 mg/mL of streptomycin at 37ºC and 5% CO2.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The cells were harvested with TRIzol Reagent (Invitrogen) and the RNA was extracted according to the manufacturer's instructions. As a last step of the extraction procedure, the RNA was purified with the RNeasy Mini-kit (Qiagen, Hilden, Germany).
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | The cDNA was prepared from 2 microg total RNA using the One-Cycle cDNA Synthesis kit from Affymetrix. This cDNA was used for synthesizing the cRNA using the IVT labeling kit (Affymetrix). The synthesized cRNA was purified with the GeneChip Sample Cleanup Module (Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized to the Affymetrix HG-U133 Plus 2.0 chip according to the protocols provided by the manufacturer.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 from Affymetrix.
| | Sample_data_processing | Data were normalized with Bioconductor software using the RMA algorithm.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Raquel,,Malumbres
| | Sample_contact_email | rmalumbres@yahoo.com
| | Sample_contact_phone | +34 948194700
| | Sample_contact_laboratory | Molecular Oncology
| | Sample_contact_department | Oncology
| | Sample_contact_institute | University of Navarra/ Center for Applied Medical Research
| | Sample_contact_address | Avenida Pio XII 55
| | Sample_contact_city | Pamplona
| | Sample_contact_state | Navarra
| | Sample_contact_zip/postal_code | 31008
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1035nnn/GSM1035323/suppl/GSM1035323_ROS_50.CEL.gz
| | Sample_series_id | GSE42203
| | Sample_series_id | GSE42204
| | Sample_data_row_count | 54675
| | |
|
GSM1035324 | GPL570 |
|
SC-1
|
Diffuse large B-cell lymphoma cell line SC1
|
cell line: SC1
cell type: diffuse large B-cell lymphoma (DLBCL) cells
tumor subtype: germinal center B-cell like
|
Gene expression data from a DLBCL cell line.
|
| Sample_geo_accession | GSM1035324
| | Sample_status | Public on Nov 10 2012
| | Sample_submission_date | Nov 09 2012
| | Sample_last_update_date | Nov 10 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | No treatment was performed.
| | Sample_growth_protocol_ch1 | Cells were grown in RPMI 1640 supplemented with 10% fetal bovine serum, 100 units/mL of penicillin and 100 mg/mL of streptomycin at 37ºC and 5% CO2.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The cells were harvested with TRIzol Reagent (Invitrogen) and the RNA was extracted according to the manufacturer's instructions. As a last step of the extraction procedure, the RNA was purified with the RNeasy Mini-kit (Qiagen, Hilden, Germany).
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | The cDNA was prepared from 2 microg total RNA using the One-Cycle cDNA Synthesis kit from Affymetrix. This cDNA was used for synthesizing the cRNA using the IVT labeling kit (Affymetrix). The synthesized cRNA was purified with the GeneChip Sample Cleanup Module (Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized to the Affymetrix HG-U133 Plus 2.0 chip according to the protocols provided by the manufacturer.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 from Affymetrix.
| | Sample_data_processing | Data were normalized with Bioconductor software using the RMA algorithm.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Raquel,,Malumbres
| | Sample_contact_email | rmalumbres@yahoo.com
| | Sample_contact_phone | +34 948194700
| | Sample_contact_laboratory | Molecular Oncology
| | Sample_contact_department | Oncology
| | Sample_contact_institute | University of Navarra/ Center for Applied Medical Research
| | Sample_contact_address | Avenida Pio XII 55
| | Sample_contact_city | Pamplona
| | Sample_contact_state | Navarra
| | Sample_contact_zip/postal_code | 31008
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1035nnn/GSM1035324/suppl/GSM1035324_SC_1.CEL.gz
| | Sample_series_id | GSE42203
| | Sample_series_id | GSE42204
| | Sample_data_row_count | 54675
| | |
|
GSM1035325 | GPL570 |
|
380
|
Diffuse large B-cell lymphoma cell line 380
|
cell line: 380
cell type: diffuse large B-cell lymphoma (DLBCL) cells
|
Gene expression data from a DLBCL cell line.
|
| Sample_geo_accession | GSM1035325
| | Sample_status | Public on Nov 10 2012
| | Sample_submission_date | Nov 09 2012
| | Sample_last_update_date | Nov 10 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | No treatment was performed.
| | Sample_growth_protocol_ch1 | Cells were grown in RPMI 1640 supplemented with 10% fetal bovine serum, 100 units/mL of penicillin and 100 mg/mL of streptomycin at 37ºC and 5% CO2.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The cells were harvested with TRIzol Reagent (Invitrogen) and the RNA was extracted according to the manufacturer's instructions. As a last step of the extraction procedure, the RNA was purified with the RNeasy Mini-kit (Qiagen, Hilden, Germany).
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | The cDNA was prepared from 2 microg total RNA using the One-Cycle cDNA Synthesis kit from Affymetrix. This cDNA was used for synthesizing the cRNA using the IVT labeling kit (Affymetrix). The synthesized cRNA was purified with the GeneChip Sample Cleanup Module (Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized to the Affymetrix HG-U133 Plus 2.0 chip according to the protocols provided by the manufacturer.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 from Affymetrix.
| | Sample_data_processing | Data were normalized with Bioconductor software using the RMA algorithm.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Raquel,,Malumbres
| | Sample_contact_email | rmalumbres@yahoo.com
| | Sample_contact_phone | +34 948194700
| | Sample_contact_laboratory | Molecular Oncology
| | Sample_contact_department | Oncology
| | Sample_contact_institute | University of Navarra/ Center for Applied Medical Research
| | Sample_contact_address | Avenida Pio XII 55
| | Sample_contact_city | Pamplona
| | Sample_contact_state | Navarra
| | Sample_contact_zip/postal_code | 31008
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1035nnn/GSM1035325/suppl/GSM1035325_380.CEL.gz
| | Sample_series_id | GSE42203
| | Sample_series_id | GSE42204
| | Sample_data_row_count | 54675
| | |
|
GSM1035326 | GPL570 |
|
OCI-Ly-19
|
Diffuse large B-cell lymphoma cell line OCI-Ly19
|
cell line: OCI-Ly19
cell type: diffuse large B-cell lymphoma (DLBCL) cells
|
Gene expression data from a DLBCL cell line.
|
| Sample_geo_accession | GSM1035326
| | Sample_status | Public on Nov 10 2012
| | Sample_submission_date | Nov 09 2012
| | Sample_last_update_date | Nov 10 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | No treatment was performed.
| | Sample_growth_protocol_ch1 | Cells were grown in RPMI 1640 supplemented with 10% fetal bovine serum, 100 units/mL of penicillin and 100 mg/mL of streptomycin at 37ºC and 5% CO2.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The cells were harvested with TRIzol Reagent (Invitrogen) and the RNA was extracted according to the manufacturer's instructions. As a last step of the extraction procedure, the RNA was purified with the RNeasy Mini-kit (Qiagen, Hilden, Germany).
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | The cDNA was prepared from 2 microg total RNA using the One-Cycle cDNA Synthesis kit from Affymetrix. This cDNA was used for synthesizing the cRNA using the IVT labeling kit (Affymetrix). The synthesized cRNA was purified with the GeneChip Sample Cleanup Module (Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized to the Affymetrix HG-U133 Plus 2.0 chip according to the protocols provided by the manufacturer.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 from Affymetrix.
| | Sample_data_processing | Data were normalized with Bioconductor software using the RMA algorithm.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Raquel,,Malumbres
| | Sample_contact_email | rmalumbres@yahoo.com
| | Sample_contact_phone | +34 948194700
| | Sample_contact_laboratory | Molecular Oncology
| | Sample_contact_department | Oncology
| | Sample_contact_institute | University of Navarra/ Center for Applied Medical Research
| | Sample_contact_address | Avenida Pio XII 55
| | Sample_contact_city | Pamplona
| | Sample_contact_state | Navarra
| | Sample_contact_zip/postal_code | 31008
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1035nnn/GSM1035326/suppl/GSM1035326_OCI_Ly_19.CEL.gz
| | Sample_series_id | GSE42203
| | Sample_series_id | GSE42204
| | Sample_data_row_count | 54675
| | |
|
GSM1035327 | GPL570 |
|
DOHH-2
|
Diffuse large B-cell lymphoma cell line DOHH2
|
cell line: DOHH2
cell type: diffuse large B-cell lymphoma (DLBCL) cells
tumor subtype: germinal center B-cell like
|
Gene expression data from a DLBCL cell line.
|
| Sample_geo_accession | GSM1035327
| | Sample_status | Public on Nov 10 2012
| | Sample_submission_date | Nov 09 2012
| | Sample_last_update_date | Nov 10 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | No treatment was performed.
| | Sample_growth_protocol_ch1 | Cells were grown in RPMI 1640 supplemented with 10% fetal bovine serum, 100 units/mL of penicillin and 100 mg/mL of streptomycin at 37ºC and 5% CO2.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The cells were harvested with TRIzol Reagent (Invitrogen) and the RNA was extracted according to the manufacturer's instructions. As a last step of the extraction procedure, the RNA was purified with the RNeasy Mini-kit (Qiagen, Hilden, Germany).
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | The cDNA was prepared from 2 microg total RNA using the One-Cycle cDNA Synthesis kit from Affymetrix. This cDNA was used for synthesizing the cRNA using the IVT labeling kit (Affymetrix). The synthesized cRNA was purified with the GeneChip Sample Cleanup Module (Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized to the Affymetrix HG-U133 Plus 2.0 chip according to the protocols provided by the manufacturer.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 from Affymetrix.
| | Sample_data_processing | Data were normalized with Bioconductor software using the RMA algorithm.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Raquel,,Malumbres
| | Sample_contact_email | rmalumbres@yahoo.com
| | Sample_contact_phone | +34 948194700
| | Sample_contact_laboratory | Molecular Oncology
| | Sample_contact_department | Oncology
| | Sample_contact_institute | University of Navarra/ Center for Applied Medical Research
| | Sample_contact_address | Avenida Pio XII 55
| | Sample_contact_city | Pamplona
| | Sample_contact_state | Navarra
| | Sample_contact_zip/postal_code | 31008
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1035nnn/GSM1035327/suppl/GSM1035327_DOHH_2.CEL.gz
| | Sample_series_id | GSE42203
| | Sample_series_id | GSE42204
| | Sample_data_row_count | 54675
| | |
|
GSM1035328 | GPL570 |
|
GRANTA-452
|
Diffuse large B-cell lymphoma cell line GRANTA-452
|
cell line: GRANTA-452
cell type: diffuse large B-cell lymphoma (DLBCL) cells
|
Gene expression data from a DLBCL cell line.
|
| Sample_geo_accession | GSM1035328
| | Sample_status | Public on Nov 10 2012
| | Sample_submission_date | Nov 09 2012
| | Sample_last_update_date | Nov 10 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | No treatment was performed.
| | Sample_growth_protocol_ch1 | Cells were grown in RPMI 1640 supplemented with 10% fetal bovine serum, 100 units/mL of penicillin and 100 mg/mL of streptomycin at 37ºC and 5% CO2.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The cells were harvested with TRIzol Reagent (Invitrogen) and the RNA was extracted according to the manufacturer's instructions. As a last step of the extraction procedure, the RNA was purified with the RNeasy Mini-kit (Qiagen, Hilden, Germany).
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | The cDNA was prepared from 2 microg total RNA using the One-Cycle cDNA Synthesis kit from Affymetrix. This cDNA was used for synthesizing the cRNA using the IVT labeling kit (Affymetrix). The synthesized cRNA was purified with the GeneChip Sample Cleanup Module (Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized to the Affymetrix HG-U133 Plus 2.0 chip according to the protocols provided by the manufacturer.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 from Affymetrix.
| | Sample_data_processing | Data were normalized with Bioconductor software using the RMA algorithm.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Raquel,,Malumbres
| | Sample_contact_email | rmalumbres@yahoo.com
| | Sample_contact_phone | +34 948194700
| | Sample_contact_laboratory | Molecular Oncology
| | Sample_contact_department | Oncology
| | Sample_contact_institute | University of Navarra/ Center for Applied Medical Research
| | Sample_contact_address | Avenida Pio XII 55
| | Sample_contact_city | Pamplona
| | Sample_contact_state | Navarra
| | Sample_contact_zip/postal_code | 31008
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1035nnn/GSM1035328/suppl/GSM1035328_GRANTA_452.CEL.gz
| | Sample_series_id | GSE42203
| | Sample_series_id | GSE42204
| | Sample_data_row_count | 54675
| | |
|
GSM1035329 | GPL570 |
|
PR-1
|
Diffuse large B-cell lymphoma cell line PR1
|
cell line: PR1
cell type: diffuse large B-cell lymphoma (DLBCL) cells
tumor subtype: germinal center B-cell like
|
Gene expression data from a DLBCL cell line.
|
| Sample_geo_accession | GSM1035329
| | Sample_status | Public on Nov 10 2012
| | Sample_submission_date | Nov 09 2012
| | Sample_last_update_date | Nov 10 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | No treatment was performed.
| | Sample_growth_protocol_ch1 | Cells were grown in RPMI 1640 supplemented with 10% fetal bovine serum, 100 units/mL of penicillin and 100 mg/mL of streptomycin at 37ºC and 5% CO2.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The cells were harvested with TRIzol Reagent (Invitrogen) and the RNA was extracted according to the manufacturer's instructions. As a last step of the extraction procedure, the RNA was purified with the RNeasy Mini-kit (Qiagen, Hilden, Germany).
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | The cDNA was prepared from 2 microg total RNA using the One-Cycle cDNA Synthesis kit from Affymetrix. This cDNA was used for synthesizing the cRNA using the IVT labeling kit (Affymetrix). The synthesized cRNA was purified with the GeneChip Sample Cleanup Module (Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized to the Affymetrix HG-U133 Plus 2.0 chip according to the protocols provided by the manufacturer.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 from Affymetrix.
| | Sample_data_processing | Data were normalized with Bioconductor software using the RMA algorithm.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Raquel,,Malumbres
| | Sample_contact_email | rmalumbres@yahoo.com
| | Sample_contact_phone | +34 948194700
| | Sample_contact_laboratory | Molecular Oncology
| | Sample_contact_department | Oncology
| | Sample_contact_institute | University of Navarra/ Center for Applied Medical Research
| | Sample_contact_address | Avenida Pio XII 55
| | Sample_contact_city | Pamplona
| | Sample_contact_state | Navarra
| | Sample_contact_zip/postal_code | 31008
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1035nnn/GSM1035329/suppl/GSM1035329_PR_1.CEL.gz
| | Sample_series_id | GSE42203
| | Sample_series_id | GSE42204
| | Sample_data_row_count | 54675
| | |
|
GSM1035330 | GPL570 |
|
NU-DHL-1
|
Diffuse large B-cell lymphoma cell line NUDHL1
|
cell line: NUDHL1
cell type: diffuse large B-cell lymphoma (DLBCL) cells
|
Gene expression data from a DLBCL cell line.
|
| Sample_geo_accession | GSM1035330
| | Sample_status | Public on Nov 10 2012
| | Sample_submission_date | Nov 09 2012
| | Sample_last_update_date | Nov 10 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | No treatment was performed.
| | Sample_growth_protocol_ch1 | Cells were grown in RPMI 1640 supplemented with 20% heat-inactivated fetal bovine serum, 100 units/mL of penicillin and 100 mg/mL of streptomycin at 37ºC and 5% CO2.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The cells were harvested with TRIzol Reagent (Invitrogen) and the RNA was extracted according to the manufacturer's instructions. As a last step of the extraction procedure, the RNA was purified with the RNeasy Mini-kit (Qiagen, Hilden, Germany).
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | The cDNA was prepared from 2 microg total RNA using the One-Cycle cDNA Synthesis kit from Affymetrix. This cDNA was used for synthesizing the cRNA using the IVT labeling kit (Affymetrix). The synthesized cRNA was purified with the GeneChip Sample Cleanup Module (Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized to the Affymetrix HG-U133 Plus 2.0 chip according to the protocols provided by the manufacturer.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 from Affymetrix.
| | Sample_data_processing | Data were normalized with Bioconductor software using the RMA algorithm.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Raquel,,Malumbres
| | Sample_contact_email | rmalumbres@yahoo.com
| | Sample_contact_phone | +34 948194700
| | Sample_contact_laboratory | Molecular Oncology
| | Sample_contact_department | Oncology
| | Sample_contact_institute | University of Navarra/ Center for Applied Medical Research
| | Sample_contact_address | Avenida Pio XII 55
| | Sample_contact_city | Pamplona
| | Sample_contact_state | Navarra
| | Sample_contact_zip/postal_code | 31008
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1035nnn/GSM1035330/suppl/GSM1035330_NUDHL_1.CEL.gz
| | Sample_series_id | GSE42203
| | Sample_series_id | GSE42204
| | Sample_data_row_count | 54675
| | |
|
GSM1035331 | GPL570 |
|
FARAGE
|
Diffuse large B-cell lymphoma cell line FARAGE
|
cell line: FARAGE
cell type: diffuse large B-cell lymphoma (DLBCL) cells
|
Gene expression data from a DLBCL cell line.
|
| Sample_geo_accession | GSM1035331
| | Sample_status | Public on Nov 10 2012
| | Sample_submission_date | Nov 09 2012
| | Sample_last_update_date | Nov 10 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | No treatment was performed.
| | Sample_growth_protocol_ch1 | Cells were grown in RPMI 1640 10 mM HEPES supplemented with 10% fetal bovine serum, 100 units/mL of penicillin and 100 mg/mL of streptomycin at 37ºC and 5% CO2.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The cells were harvested with TRIzol Reagent (Invitrogen) and the RNA was extracted according to the manufacturer's instructions. As a last step of the extraction procedure, the RNA was purified with the RNeasy Mini-kit (Qiagen, Hilden, Germany).
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | The cDNA was prepared from 2 microg total RNA using the One-Cycle cDNA Synthesis kit from Affymetrix. This cDNA was used for synthesizing the cRNA using the IVT labeling kit (Affymetrix). The synthesized cRNA was purified with the GeneChip Sample Cleanup Module (Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized to the Affymetrix HG-U133 Plus 2.0 chip according to the protocols provided by the manufacturer.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 from Affymetrix.
| | Sample_data_processing | Data were normalized with Bioconductor software using the RMA algorithm.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Raquel,,Malumbres
| | Sample_contact_email | rmalumbres@yahoo.com
| | Sample_contact_phone | +34 948194700
| | Sample_contact_laboratory | Molecular Oncology
| | Sample_contact_department | Oncology
| | Sample_contact_institute | University of Navarra/ Center for Applied Medical Research
| | Sample_contact_address | Avenida Pio XII 55
| | Sample_contact_city | Pamplona
| | Sample_contact_state | Navarra
| | Sample_contact_zip/postal_code | 31008
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1035nnn/GSM1035331/suppl/GSM1035331_FARAGE.CEL.gz
| | Sample_series_id | GSE42203
| | Sample_series_id | GSE42204
| | Sample_data_row_count | 54675
| | |
|
GSM1035332 | GPL570 |
|
OCI-Ly-4
|
Diffuse large B-cell lymphoma cell line OCI-Ly4
|
cell line: OCI-Ly4
cell type: diffuse large B-cell lymphoma (DLBCL) cells
tumor subtype: germinal center B-cell like
|
Gene expression data from a DLBCL cell line.
|
| Sample_geo_accession | GSM1035332
| | Sample_status | Public on Nov 10 2012
| | Sample_submission_date | Nov 09 2012
| | Sample_last_update_date | Nov 10 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | No treatment was performed.
| | Sample_growth_protocol_ch1 | Cells were grown in IMDM supplemented with 10% fetal bovine serum, 100 units/mL of penicillin and 100 mg/mL of streptomycin at 37ºC and 5% CO2.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The cells were harvested with TRIzol Reagent (Invitrogen) and the RNA was extracted according to the manufacturer's instructions. As a last step of the extraction procedure, the RNA was purified with the RNeasy Mini-kit (Qiagen, Hilden, Germany).
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | The cDNA was prepared from 2 microg total RNA using the One-Cycle cDNA Synthesis kit from Affymetrix. This cDNA was used for synthesizing the cRNA using the IVT labeling kit (Affymetrix). The synthesized cRNA was purified with the GeneChip Sample Cleanup Module (Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized to the Affymetrix HG-U133 Plus 2.0 chip according to the protocols provided by the manufacturer.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 from Affymetrix.
| | Sample_data_processing | Data were normalized with Bioconductor software using the RMA algorithm.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Raquel,,Malumbres
| | Sample_contact_email | rmalumbres@yahoo.com
| | Sample_contact_phone | +34 948194700
| | Sample_contact_laboratory | Molecular Oncology
| | Sample_contact_department | Oncology
| | Sample_contact_institute | University of Navarra/ Center for Applied Medical Research
| | Sample_contact_address | Avenida Pio XII 55
| | Sample_contact_city | Pamplona
| | Sample_contact_state | Navarra
| | Sample_contact_zip/postal_code | 31008
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1035nnn/GSM1035332/suppl/GSM1035332_OCI_Ly_4.CEL.gz
| | Sample_series_id | GSE42203
| | Sample_series_id | GSE42204
| | Sample_data_row_count | 54675
| | |
|
GSM1035333 | GPL570 |
|
OCI-Ly-7
|
Diffuse large B-cell lymphoma cell line OCI-Ly7
|
cell line: OCI-Ly7
cell type: diffuse large B-cell lymphoma (DLBCL) cells
|
Gene expression data from a DLBCL cell line.
|
| Sample_geo_accession | GSM1035333
| | Sample_status | Public on Nov 10 2012
| | Sample_submission_date | Nov 09 2012
| | Sample_last_update_date | Nov 10 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | No treatment was performed.
| | Sample_growth_protocol_ch1 | Cells were grown in IMDM supplemented with 10% fetal bovine serum, 200 units/mL of penicillin and 200 mg/mL of streptomycin at 37ºC and 5% CO2.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The cells were harvested with TRIzol Reagent (Invitrogen) and the RNA was extracted according to the manufacturer's instructions. As a last step of the extraction procedure, the RNA was purified with the RNeasy Mini-kit (Qiagen, Hilden, Germany).
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | The cDNA was prepared from 2 microg total RNA using the One-Cycle cDNA Synthesis kit from Affymetrix. This cDNA was used for synthesizing the cRNA using the IVT labeling kit (Affymetrix). The synthesized cRNA was purified with the GeneChip Sample Cleanup Module (Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized to the Affymetrix HG-U133 Plus 2.0 chip according to the protocols provided by the manufacturer.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 from Affymetrix.
| | Sample_data_processing | Data were normalized with Bioconductor software using the RMA algorithm.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Raquel,,Malumbres
| | Sample_contact_email | rmalumbres@yahoo.com
| | Sample_contact_phone | +34 948194700
| | Sample_contact_laboratory | Molecular Oncology
| | Sample_contact_department | Oncology
| | Sample_contact_institute | University of Navarra/ Center for Applied Medical Research
| | Sample_contact_address | Avenida Pio XII 55
| | Sample_contact_city | Pamplona
| | Sample_contact_state | Navarra
| | Sample_contact_zip/postal_code | 31008
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1035nnn/GSM1035333/suppl/GSM1035333_OCI_Ly_7.CEL.gz
| | Sample_series_id | GSE42203
| | Sample_series_id | GSE42204
| | Sample_data_row_count | 54675
| | |
|
GSM1035334 | GPL570 |
|
PFEIFFER
|
Diffuse large B-cell lymphoma cell line PFEIFFER
|
cell line: PFEIFFER
cell type: diffuse large B-cell lymphoma (DLBCL) cells
|
Gene expression data from a DLBCL cell line.
|
| Sample_geo_accession | GSM1035334
| | Sample_status | Public on Nov 10 2012
| | Sample_submission_date | Nov 09 2012
| | Sample_last_update_date | Nov 10 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | No treatment was performed.
| | Sample_growth_protocol_ch1 | Cells were grown in RPMI 1640 10 mM HEPES supplemented with 10% fetal bovine serum, 100 units/mL of penicillin and 100 mg/mL of streptomycin at 37ºC and 5% CO2.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The cells were harvested with TRIzol Reagent (Invitrogen) and the RNA was extracted according to the manufacturer's instructions. As a last step of the extraction procedure, the RNA was purified with the RNeasy Mini-kit (Qiagen, Hilden, Germany).
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | The cDNA was prepared from 2 microg total RNA using the One-Cycle cDNA Synthesis kit from Affymetrix. This cDNA was used for synthesizing the cRNA using the IVT labeling kit (Affymetrix). The synthesized cRNA was purified with the GeneChip Sample Cleanup Module (Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized to the Affymetrix HG-U133 Plus 2.0 chip according to the protocols provided by the manufacturer.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 from Affymetrix.
| | Sample_data_processing | Data were normalized with Bioconductor software using the RMA algorithm.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Raquel,,Malumbres
| | Sample_contact_email | rmalumbres@yahoo.com
| | Sample_contact_phone | +34 948194700
| | Sample_contact_laboratory | Molecular Oncology
| | Sample_contact_department | Oncology
| | Sample_contact_institute | University of Navarra/ Center for Applied Medical Research
| | Sample_contact_address | Avenida Pio XII 55
| | Sample_contact_city | Pamplona
| | Sample_contact_state | Navarra
| | Sample_contact_zip/postal_code | 31008
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1035nnn/GSM1035334/suppl/GSM1035334_PFEIFFER.CEL.gz
| | Sample_series_id | GSE42203
| | Sample_series_id | GSE42204
| | Sample_data_row_count | 54675
| | |
|
GSM1035335 | GPL570 |
|
SU-DHL-7
|
Diffuse large B-cell lymphoma cell line SUDHL7
|
cell line: SUDHL7
cell type: diffuse large B-cell lymphoma (DLBCL) cells
tumor subtype: germinal center B-cell like
|
Gene expression data from a DLBCL cell line.
|
| Sample_geo_accession | GSM1035335
| | Sample_status | Public on Nov 10 2012
| | Sample_submission_date | Nov 09 2012
| | Sample_last_update_date | Nov 10 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | No treatment was performed.
| | Sample_growth_protocol_ch1 | Cells were grown in RPMI 1640 10 mM HEPES supplemented with 10% fetal bovine serum, 100 units/mL of penicillin and 100 mg/mL of streptomycin at 37ºC and 5% CO2.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The cells were harvested with TRIzol Reagent (Invitrogen) and the RNA was extracted according to the manufacturer's instructions. As a last step of the extraction procedure, the RNA was purified with the RNeasy Mini-kit (Qiagen, Hilden, Germany).
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | The cDNA was prepared from 2 microg total RNA using the One-Cycle cDNA Synthesis kit from Affymetrix. This cDNA was used for synthesizing the cRNA using the IVT labeling kit (Affymetrix). The synthesized cRNA was purified with the GeneChip Sample Cleanup Module (Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized to the Affymetrix HG-U133 Plus 2.0 chip according to the protocols provided by the manufacturer.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 from Affymetrix.
| | Sample_data_processing | Data were normalized with Bioconductor software using the RMA algorithm.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Raquel,,Malumbres
| | Sample_contact_email | rmalumbres@yahoo.com
| | Sample_contact_phone | +34 948194700
| | Sample_contact_laboratory | Molecular Oncology
| | Sample_contact_department | Oncology
| | Sample_contact_institute | University of Navarra/ Center for Applied Medical Research
| | Sample_contact_address | Avenida Pio XII 55
| | Sample_contact_city | Pamplona
| | Sample_contact_state | Navarra
| | Sample_contact_zip/postal_code | 31008
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1035nnn/GSM1035335/suppl/GSM1035335_SU_DHL_7.CEL.gz
| | Sample_series_id | GSE42203
| | Sample_series_id | GSE42204
| | Sample_data_row_count | 54675
| | |
|
GSM1035336 | GPL570 |
|
TOLEDO
|
Diffuse large B-cell lymphoma cell line TOLEDO
|
cell line: TOLEDO
cell type: diffuse large B-cell lymphoma (DLBCL) cells
|
Gene expression data from a DLBCL cell line.
|
| Sample_geo_accession | GSM1035336
| | Sample_status | Public on Nov 10 2012
| | Sample_submission_date | Nov 09 2012
| | Sample_last_update_date | Nov 10 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | No treatment was performed.
| | Sample_growth_protocol_ch1 | Cells were grown in RPMI 1640 10 mM HEPES supplemented with 10% fetal bovine serum, 100 units/mL of penicillin and 100 mg/mL of streptomycin at 37ºC and 5% CO2.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The cells were harvested with TRIzol Reagent (Invitrogen) and the RNA was extracted according to the manufacturer's instructions. As a last step of the extraction procedure, the RNA was purified with the RNeasy Mini-kit (Qiagen, Hilden, Germany).
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | The cDNA was prepared from 2 microg total RNA using the One-Cycle cDNA Synthesis kit from Affymetrix. This cDNA was used for synthesizing the cRNA using the IVT labeling kit (Affymetrix). The synthesized cRNA was purified with the GeneChip Sample Cleanup Module (Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized to the Affymetrix HG-U133 Plus 2.0 chip according to the protocols provided by the manufacturer.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 from Affymetrix.
| | Sample_data_processing | Data were normalized with Bioconductor software using the RMA algorithm.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Raquel,,Malumbres
| | Sample_contact_email | rmalumbres@yahoo.com
| | Sample_contact_phone | +34 948194700
| | Sample_contact_laboratory | Molecular Oncology
| | Sample_contact_department | Oncology
| | Sample_contact_institute | University of Navarra/ Center for Applied Medical Research
| | Sample_contact_address | Avenida Pio XII 55
| | Sample_contact_city | Pamplona
| | Sample_contact_state | Navarra
| | Sample_contact_zip/postal_code | 31008
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1035nnn/GSM1035336/suppl/GSM1035336_TOLEDO.CEL.gz
| | Sample_series_id | GSE42203
| | Sample_series_id | GSE42204
| | Sample_data_row_count | 54675
| | |
|
GSM1035337 | GPL570 |
|
HLY-1
|
Diffuse large B-cell lymphoma cell line HLY1
|
cell line: HLY1
cell type: diffuse large B-cell lymphoma (DLBCL) cells
tumor subtype: activated B-cell like
|
Gene expression data from a DLBCL cell line.
|
| Sample_geo_accession | GSM1035337
| | Sample_status | Public on Nov 10 2012
| | Sample_submission_date | Nov 09 2012
| | Sample_last_update_date | Nov 10 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | No treatment was performed.
| | Sample_growth_protocol_ch1 | Cells were grown in RPMI 1640 supplemented with 10% fetal bovine serum, 100 units/mL of penicillin and 100 mg/mL of streptomycin at 37ºC and 5% CO2.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The cells were harvested with TRIzol Reagent (Invitrogen) and the RNA was extracted according to the manufacturer's instructions. As a last step of the extraction procedure, the RNA was purified with the RNeasy Mini-kit (Qiagen, Hilden, Germany).
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | The cDNA was prepared from 2 microg total RNA using the One-Cycle cDNA Synthesis kit from Affymetrix. This cDNA was used for synthesizing the cRNA using the IVT labeling kit (Affymetrix). The synthesized cRNA was purified with the GeneChip Sample Cleanup Module (Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized to the Affymetrix HG-U133 Plus 2.0 chip according to the protocols provided by the manufacturer.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 from Affymetrix.
| | Sample_data_processing | Data were normalized with Bioconductor software using the RMA algorithm.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Raquel,,Malumbres
| | Sample_contact_email | rmalumbres@yahoo.com
| | Sample_contact_phone | +34 948194700
| | Sample_contact_laboratory | Molecular Oncology
| | Sample_contact_department | Oncology
| | Sample_contact_institute | University of Navarra/ Center for Applied Medical Research
| | Sample_contact_address | Avenida Pio XII 55
| | Sample_contact_city | Pamplona
| | Sample_contact_state | Navarra
| | Sample_contact_zip/postal_code | 31008
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1035nnn/GSM1035337/suppl/GSM1035337_HLY_1.CEL.gz
| | Sample_series_id | GSE42203
| | Sample_series_id | GSE42204
| | Sample_data_row_count | 54675
| | |
|
GSM1035338 | GPL570 |
|
HBL-1
|
Diffuse large B-cell lymphoma cell line HBL1
|
cell line: HBL1
cell type: diffuse large B-cell lymphoma (DLBCL) cells
tumor subtype: activated B-cell like
|
Gene expression data from a DLBCL cell line.
|
| Sample_geo_accession | GSM1035338
| | Sample_status | Public on Nov 10 2012
| | Sample_submission_date | Nov 09 2012
| | Sample_last_update_date | Nov 10 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | No treatment was performed.
| | Sample_growth_protocol_ch1 | Cells were grown in RPMI 1640 supplemented with 10% fetal bovine serum, 100 units/mL of penicillin and 100 mg/mL of streptomycin at 37ºC and 5% CO2.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The cells were harvested with TRIzol Reagent (Invitrogen) and the RNA was extracted according to the manufacturer's instructions. As a last step of the extraction procedure, the RNA was purified with the RNeasy Mini-kit (Qiagen, Hilden, Germany).
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | The cDNA was prepared from 2 microg total RNA using the One-Cycle cDNA Synthesis kit from Affymetrix. This cDNA was used for synthesizing the cRNA using the IVT labeling kit (Affymetrix). The synthesized cRNA was purified with the GeneChip Sample Cleanup Module (Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized to the Affymetrix HG-U133 Plus 2.0 chip according to the protocols provided by the manufacturer.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 from Affymetrix.
| | Sample_data_processing | Data were normalized with Bioconductor software using the RMA algorithm.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Raquel,,Malumbres
| | Sample_contact_email | rmalumbres@yahoo.com
| | Sample_contact_phone | +34 948194700
| | Sample_contact_laboratory | Molecular Oncology
| | Sample_contact_department | Oncology
| | Sample_contact_institute | University of Navarra/ Center for Applied Medical Research
| | Sample_contact_address | Avenida Pio XII 55
| | Sample_contact_city | Pamplona
| | Sample_contact_state | Navarra
| | Sample_contact_zip/postal_code | 31008
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1035nnn/GSM1035338/suppl/GSM1035338_HBL_1.CEL.gz
| | Sample_series_id | GSE42203
| | Sample_series_id | GSE42204
| | Sample_data_row_count | 54675
| | |
|
GSM1035339 | GPL570 |
|
U-2932
|
Diffuse large B-cell lymphoma cell line U2932
|
cell line: U2932
cell type: diffuse large B-cell lymphoma (DLBCL) cells
tumor subtype: activated B-cell like
|
Gene expression data from a DLBCL cell line.
|
| Sample_geo_accession | GSM1035339
| | Sample_status | Public on Nov 10 2012
| | Sample_submission_date | Nov 09 2012
| | Sample_last_update_date | Nov 10 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | No treatment was performed.
| | Sample_growth_protocol_ch1 | Cells were grown in RPMI 1640 supplemented with 10% fetal bovine serum, 100 units/mL of penicillin and 100 mg/mL of streptomycin at 37ºC and 5% CO2.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The cells were harvested with TRIzol Reagent (Invitrogen) and the RNA was extracted according to the manufacturer's instructions. As a last step of the extraction procedure, the RNA was purified with the RNeasy Mini-kit (Qiagen, Hilden, Germany).
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | The cDNA was prepared from 2 microg total RNA using the One-Cycle cDNA Synthesis kit from Affymetrix. This cDNA was used for synthesizing the cRNA using the IVT labeling kit (Affymetrix). The synthesized cRNA was purified with the GeneChip Sample Cleanup Module (Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized to the Affymetrix HG-U133 Plus 2.0 chip according to the protocols provided by the manufacturer.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 from Affymetrix.
| | Sample_data_processing | Data were normalized with Bioconductor software using the RMA algorithm.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Raquel,,Malumbres
| | Sample_contact_email | rmalumbres@yahoo.com
| | Sample_contact_phone | +34 948194700
| | Sample_contact_laboratory | Molecular Oncology
| | Sample_contact_department | Oncology
| | Sample_contact_institute | University of Navarra/ Center for Applied Medical Research
| | Sample_contact_address | Avenida Pio XII 55
| | Sample_contact_city | Pamplona
| | Sample_contact_state | Navarra
| | Sample_contact_zip/postal_code | 31008
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1035nnn/GSM1035339/suppl/GSM1035339_U_2932.CEL.gz
| | Sample_series_id | GSE42203
| | Sample_series_id | GSE42204
| | Sample_data_row_count | 54675
| | |
|
GSM1035340 | GPL570 |
|
OCI-Ly-10
|
Diffuse large B-cell lymphoma cell line OCI-Ly10
|
cell line: OCI-Ly10
cell type: diffuse large B-cell lymphoma (DLBCL) cells
tumor subtype: activated B-cell like
|
Gene expression data from a DLBCL cell line.
|
| Sample_geo_accession | GSM1035340
| | Sample_status | Public on Nov 10 2012
| | Sample_submission_date | Nov 09 2012
| | Sample_last_update_date | Nov 10 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | No treatment was performed.
| | Sample_growth_protocol_ch1 | Cells were grown in IMDM supplemented with 20% human serum, 55 mM b-mercaptoethanol, 200 units/mL of penicillin and 200 mg/mL of streptomycin at 37ºC and 5% CO2.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The cells were harvested with TRIzol Reagent (Invitrogen) and the RNA was extracted according to the manufacturer's instructions. As a last step of the extraction procedure, the RNA was purified with the RNeasy Mini-kit (Qiagen, Hilden, Germany).
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | The cDNA was prepared from 2 microg total RNA using the One-Cycle cDNA Synthesis kit from Affymetrix. This cDNA was used for synthesizing the cRNA using the IVT labeling kit (Affymetrix). The synthesized cRNA was purified with the GeneChip Sample Cleanup Module (Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized to the Affymetrix HG-U133 Plus 2.0 chip according to the protocols provided by the manufacturer.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 from Affymetrix.
| | Sample_data_processing | Data were normalized with Bioconductor software using the RMA algorithm.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Raquel,,Malumbres
| | Sample_contact_email | rmalumbres@yahoo.com
| | Sample_contact_phone | +34 948194700
| | Sample_contact_laboratory | Molecular Oncology
| | Sample_contact_department | Oncology
| | Sample_contact_institute | University of Navarra/ Center for Applied Medical Research
| | Sample_contact_address | Avenida Pio XII 55
| | Sample_contact_city | Pamplona
| | Sample_contact_state | Navarra
| | Sample_contact_zip/postal_code | 31008
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1035nnn/GSM1035340/suppl/GSM1035340_OCI_Ly_10.CEL.gz
| | Sample_series_id | GSE42203
| | Sample_series_id | GSE42204
| | Sample_data_row_count | 54675
| | |
|
GSM1035341 | GPL570 |
|
OCI-Ly-1
|
Diffuse large B-cell lymphoma cell line OCI-Ly1
|
cell line: OCI-Ly1
cell type: diffuse large B-cell lymphoma (DLBCL) cells
|
Gene expression data from a DLBCL cell line.
|
| Sample_geo_accession | GSM1035341
| | Sample_status | Public on Nov 10 2012
| | Sample_submission_date | Nov 09 2012
| | Sample_last_update_date | Nov 10 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | No treatment was performed.
| | Sample_growth_protocol_ch1 | Cells were grown in IMDM supplemented with 10% fetal bovine serum, 200 units/mL of penicillin and 200 mg/mL of streptomycin at 37ºC and 5% CO2.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The cells were harvested with TRIzol Reagent (Invitrogen) and the RNA was extracted according to the manufacturer's instructions. As a last step of the extraction procedure, the RNA was purified with the RNeasy Mini-kit (Qiagen, Hilden, Germany).
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | The cDNA was prepared from 2 microg total RNA using the One-Cycle cDNA Synthesis kit from Affymetrix. This cDNA was used for synthesizing the cRNA using the IVT labeling kit (Affymetrix). The synthesized cRNA was purified with the GeneChip Sample Cleanup Module (Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized to the Affymetrix HG-U133 Plus 2.0 chip according to the protocols provided by the manufacturer.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 from Affymetrix.
| | Sample_data_processing | Data were normalized with Bioconductor software using the RMA algorithm.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Raquel,,Malumbres
| | Sample_contact_email | rmalumbres@yahoo.com
| | Sample_contact_phone | +34 948194700
| | Sample_contact_laboratory | Molecular Oncology
| | Sample_contact_department | Oncology
| | Sample_contact_institute | University of Navarra/ Center for Applied Medical Research
| | Sample_contact_address | Avenida Pio XII 55
| | Sample_contact_city | Pamplona
| | Sample_contact_state | Navarra
| | Sample_contact_zip/postal_code | 31008
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1035nnn/GSM1035341/suppl/GSM1035341_OCI_Ly_1.CEL.gz
| | Sample_series_id | GSE42203
| | Sample_series_id | GSE42204
| | Sample_data_row_count | 54675
| | |
|
GSM1035342 | GPL570 |
|
OCI-Ly-3
|
Diffuse large B-cell lymphoma cell line OCI-Ly3
|
cell line: OCI-Ly3
cell type: diffuse large B-cell lymphoma (DLBCL) cells
tumor subtype: activated B-cell like
|
Gene expression data from a DLBCL cell line.
|
| Sample_geo_accession | GSM1035342
| | Sample_status | Public on Nov 10 2012
| | Sample_submission_date | Nov 09 2012
| | Sample_last_update_date | Nov 10 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | No treatment was performed.
| | Sample_growth_protocol_ch1 | Cells were grown in IMDM supplemented with 20% human serum, 55 mM b-mercaptoethanol, 200 units/mL of penicillin and 200 mg/mL of streptomycin at 37ºC and 5% CO2.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The cells were harvested with TRIzol Reagent (Invitrogen) and the RNA was extracted according to the manufacturer's instructions. As a last step of the extraction procedure, the RNA was purified with the RNeasy Mini-kit (Qiagen, Hilden, Germany).
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | The cDNA was prepared from 2 microg total RNA using the One-Cycle cDNA Synthesis kit from Affymetrix. This cDNA was used for synthesizing the cRNA using the IVT labeling kit (Affymetrix). The synthesized cRNA was purified with the GeneChip Sample Cleanup Module (Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized to the Affymetrix HG-U133 Plus 2.0 chip according to the protocols provided by the manufacturer.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 from Affymetrix.
| | Sample_data_processing | Data were normalized with Bioconductor software using the RMA algorithm.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Raquel,,Malumbres
| | Sample_contact_email | rmalumbres@yahoo.com
| | Sample_contact_phone | +34 948194700
| | Sample_contact_laboratory | Molecular Oncology
| | Sample_contact_department | Oncology
| | Sample_contact_institute | University of Navarra/ Center for Applied Medical Research
| | Sample_contact_address | Avenida Pio XII 55
| | Sample_contact_city | Pamplona
| | Sample_contact_state | Navarra
| | Sample_contact_zip/postal_code | 31008
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1035nnn/GSM1035342/suppl/GSM1035342_OCILy3.CEL.gz
| | Sample_series_id | GSE42203
| | Sample_series_id | GSE42204
| | Sample_data_row_count | 54675
| | |
|
GSM1035343 | GPL570 |
|
KARPAS-1718_R1
|
Splenic marginal zone lymphoma cell line KARPAS-1718
|
cell line: KARPAS-1718
cell type: splenic marginal zone lymphoma cells
|
Gene expression data from an SMZL cell line.
|
| Sample_geo_accession | GSM1035343
| | Sample_status | Public on Nov 10 2012
| | Sample_submission_date | Nov 09 2012
| | Sample_last_update_date | Nov 10 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | No treatment was performed.
| | Sample_growth_protocol_ch1 | Cells were grown in RPMI 1640 supplemented with 10% fetal bovine serum, 100 units/mL of penicillin and 100 mg/mL of streptomycin at 37ºC and 5% CO2.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The cells were harvested with TRIzol Reagent (Invitrogen) and the RNA was extracted according to the manufacturer's instructions. As a last step of the extraction procedure, the RNA was purified with the RNeasy Mini-kit (Qiagen, Hilden, Germany).
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | The cDNA was prepared from 2 microg total RNA using the One-Cycle cDNA Synthesis kit from Affymetrix. This cDNA was used for synthesizing the cRNA using the IVT labeling kit (Affymetrix). The synthesized cRNA was purified with the GeneChip Sample Cleanup Module (Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized to the Affymetrix HG-U133 Plus 2.0 chip according to the protocols provided by the manufacturer.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 from Affymetrix.
| | Sample_data_processing | Data were normalized with Bioconductor software using the RMA algorithm.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Raquel,,Malumbres
| | Sample_contact_email | rmalumbres@yahoo.com
| | Sample_contact_phone | +34 948194700
| | Sample_contact_laboratory | Molecular Oncology
| | Sample_contact_department | Oncology
| | Sample_contact_institute | University of Navarra/ Center for Applied Medical Research
| | Sample_contact_address | Avenida Pio XII 55
| | Sample_contact_city | Pamplona
| | Sample_contact_state | Navarra
| | Sample_contact_zip/postal_code | 31008
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1035nnn/GSM1035343/suppl/GSM1035343_KARPAS_1718_R1.CEL.gz
| | Sample_series_id | GSE42203
| | Sample_series_id | GSE42204
| | Sample_data_row_count | 54675
| | |
|
GSM1035344 | GPL570 |
|
KARPAS-1718_R2
|
Splenic marginal zone lymphoma cell line KARPAS-1718
|
cell line: KARPAS-1718
cell type: splenic marginal zone lymphoma cells
|
Gene expression data from an SMZL cell line.
|
| Sample_geo_accession | GSM1035344
| | Sample_status | Public on Nov 10 2012
| | Sample_submission_date | Nov 09 2012
| | Sample_last_update_date | Nov 10 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | No treatment was performed.
| | Sample_growth_protocol_ch1 | Cells were grown in RPMI 1640 supplemented with 10% fetal bovine serum, 100 units/mL of penicillin and 100 mg/mL of streptomycin at 37ºC and 5% CO2.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The cells were harvested with TRIzol Reagent (Invitrogen) and the RNA was extracted according to the manufacturer's instructions. As a last step of the extraction procedure, the RNA was purified with the RNeasy Mini-kit (Qiagen, Hilden, Germany).
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | The cDNA was prepared from 2 microg total RNA using the One-Cycle cDNA Synthesis kit from Affymetrix. This cDNA was used for synthesizing the cRNA using the IVT labeling kit (Affymetrix). The synthesized cRNA was purified with the GeneChip Sample Cleanup Module (Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized to the Affymetrix HG-U133 Plus 2.0 chip according to the protocols provided by the manufacturer.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 from Affymetrix.
| | Sample_data_processing | Data were normalized with Bioconductor software using the RMA algorithm.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Raquel,,Malumbres
| | Sample_contact_email | rmalumbres@yahoo.com
| | Sample_contact_phone | +34 948194700
| | Sample_contact_laboratory | Molecular Oncology
| | Sample_contact_department | Oncology
| | Sample_contact_institute | University of Navarra/ Center for Applied Medical Research
| | Sample_contact_address | Avenida Pio XII 55
| | Sample_contact_city | Pamplona
| | Sample_contact_state | Navarra
| | Sample_contact_zip/postal_code | 31008
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1035nnn/GSM1035344/suppl/GSM1035344_KARPAS_1718_R2.CEL.gz
| | Sample_series_id | GSE42203
| | Sample_series_id | GSE42204
| | Sample_data_row_count | 54675
| | |
|
GSM1035345 | GPL570 |
|
VL-51_R1
|
Splenic marginal zone lymphoma cell line VL51
|
cell line: VL51
cell type: splenic marginal zone lymphoma cells
|
Gene expression data from an SMZL cell line.
|
| Sample_geo_accession | GSM1035345
| | Sample_status | Public on Nov 10 2012
| | Sample_submission_date | Nov 09 2012
| | Sample_last_update_date | Nov 10 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | No treatment was performed.
| | Sample_growth_protocol_ch1 | Cells were grown in RPMI 1640 supplemented with 10% fetal bovine serum, 100 units/mL of penicillin and 100 mg/mL of streptomycin at 37ºC and 5% CO2.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The cells were harvested with TRIzol Reagent (Invitrogen) and the RNA was extracted according to the manufacturer's instructions. As a last step of the extraction procedure, the RNA was purified with the RNeasy Mini-kit (Qiagen, Hilden, Germany).
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | The cDNA was prepared from 2 microg total RNA using the One-Cycle cDNA Synthesis kit from Affymetrix. This cDNA was used for synthesizing the cRNA using the IVT labeling kit (Affymetrix). The synthesized cRNA was purified with the GeneChip Sample Cleanup Module (Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized to the Affymetrix HG-U133 Plus 2.0 chip according to the protocols provided by the manufacturer.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 from Affymetrix.
| | Sample_data_processing | Data were normalized with Bioconductor software using the RMA algorithm.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Raquel,,Malumbres
| | Sample_contact_email | rmalumbres@yahoo.com
| | Sample_contact_phone | +34 948194700
| | Sample_contact_laboratory | Molecular Oncology
| | Sample_contact_department | Oncology
| | Sample_contact_institute | University of Navarra/ Center for Applied Medical Research
| | Sample_contact_address | Avenida Pio XII 55
| | Sample_contact_city | Pamplona
| | Sample_contact_state | Navarra
| | Sample_contact_zip/postal_code | 31008
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1035nnn/GSM1035345/suppl/GSM1035345_VL_51_R1.CEL.gz
| | Sample_series_id | GSE42203
| | Sample_series_id | GSE42204
| | Sample_data_row_count | 54675
| | |
|
GSM1035346 | GPL570 |
|
VL-51_R2
|
Splenic marginal zone lymphoma cell line VL51
|
cell line: VL51
cell type: splenic marginal zone lymphoma cells
|
Gene expression data from an SMZL cell line.
|
| Sample_geo_accession | GSM1035346
| | Sample_status | Public on Nov 10 2012
| | Sample_submission_date | Nov 09 2012
| | Sample_last_update_date | Nov 10 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | No treatment was performed.
| | Sample_growth_protocol_ch1 | Cells were grown in RPMI 1640 supplemented with 10% fetal bovine serum, 100 units/mL of penicillin and 100 mg/mL of streptomycin at 37ºC and 5% CO2.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The cells were harvested with TRIzol Reagent (Invitrogen) and the RNA was extracted according to the manufacturer's instructions. As a last step of the extraction procedure, the RNA was purified with the RNeasy Mini-kit (Qiagen, Hilden, Germany).
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | The cDNA was prepared from 2 microg total RNA using the One-Cycle cDNA Synthesis kit from Affymetrix. This cDNA was used for synthesizing the cRNA using the IVT labeling kit (Affymetrix). The synthesized cRNA was purified with the GeneChip Sample Cleanup Module (Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized to the Affymetrix HG-U133 Plus 2.0 chip according to the protocols provided by the manufacturer.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 from Affymetrix.
| | Sample_data_processing | Data were normalized with Bioconductor software using the RMA algorithm.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Raquel,,Malumbres
| | Sample_contact_email | rmalumbres@yahoo.com
| | Sample_contact_phone | +34 948194700
| | Sample_contact_laboratory | Molecular Oncology
| | Sample_contact_department | Oncology
| | Sample_contact_institute | University of Navarra/ Center for Applied Medical Research
| | Sample_contact_address | Avenida Pio XII 55
| | Sample_contact_city | Pamplona
| | Sample_contact_state | Navarra
| | Sample_contact_zip/postal_code | 31008
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1035nnn/GSM1035346/suppl/GSM1035346_VL_51_R2.CEL.gz
| | Sample_series_id | GSE42203
| | Sample_series_id | GSE42204
| | Sample_data_row_count | 54675
| | |
|
GSM1035347 | GPL570 |
|
SSK-41_R1
|
Splenic marginal zone lymphoma cell line SSK41
|
cell line: SSK41
cell type: splenic marginal zone lymphoma cells
|
Gene expression data from an SMZL cell line.
|
| Sample_geo_accession | GSM1035347
| | Sample_status | Public on Nov 10 2012
| | Sample_submission_date | Nov 09 2012
| | Sample_last_update_date | Nov 10 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | No treatment was performed.
| | Sample_growth_protocol_ch1 | Cells were grown in RPMI 1640 supplemented with 10% fetal bovine serum, 100 units/mL of penicillin and 100 mg/mL of streptomycin at 37ºC and 5% CO2.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The cells were harvested with TRIzol Reagent (Invitrogen) and the RNA was extracted according to the manufacturer's instructions. As a last step of the extraction procedure, the RNA was purified with the RNeasy Mini-kit (Qiagen, Hilden, Germany).
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | The cDNA was prepared from 2 microg total RNA using the One-Cycle cDNA Synthesis kit from Affymetrix. This cDNA was used for synthesizing the cRNA using the IVT labeling kit (Affymetrix). The synthesized cRNA was purified with the GeneChip Sample Cleanup Module (Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized to the Affymetrix HG-U133 Plus 2.0 chip according to the protocols provided by the manufacturer.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 from Affymetrix.
| | Sample_data_processing | Data were normalized with Bioconductor software using the RMA algorithm.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Raquel,,Malumbres
| | Sample_contact_email | rmalumbres@yahoo.com
| | Sample_contact_phone | +34 948194700
| | Sample_contact_laboratory | Molecular Oncology
| | Sample_contact_department | Oncology
| | Sample_contact_institute | University of Navarra/ Center for Applied Medical Research
| | Sample_contact_address | Avenida Pio XII 55
| | Sample_contact_city | Pamplona
| | Sample_contact_state | Navarra
| | Sample_contact_zip/postal_code | 31008
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1035nnn/GSM1035347/suppl/GSM1035347_SSK_41_R1.CEL.gz
| | Sample_series_id | GSE42203
| | Sample_series_id | GSE42204
| | Sample_data_row_count | 54675
| | |
|
GSM1035348 | GPL570 |
|
SSK-41_R2
|
Splenic marginal zone lymphoma cell line SSK41
|
cell line: SSK41
cell type: splenic marginal zone lymphoma cells
|
Gene expression data from an SMZL cell line.
|
| Sample_geo_accession | GSM1035348
| | Sample_status | Public on Nov 10 2012
| | Sample_submission_date | Nov 09 2012
| | Sample_last_update_date | Nov 10 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | No treatment was performed.
| | Sample_growth_protocol_ch1 | Cells were grown in RPMI 1640 supplemented with 10% fetal bovine serum, 100 units/mL of penicillin and 100 mg/mL of streptomycin at 37ºC and 5% CO2.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The cells were harvested with TRIzol Reagent (Invitrogen) and the RNA was extracted according to the manufacturer's instructions. As a last step of the extraction procedure, the RNA was purified with the RNeasy Mini-kit (Qiagen, Hilden, Germany).
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | The cDNA was prepared from 2 microg total RNA using the One-Cycle cDNA Synthesis kit from Affymetrix. This cDNA was used for synthesizing the cRNA using the IVT labeling kit (Affymetrix). The synthesized cRNA was purified with the GeneChip Sample Cleanup Module (Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized to the Affymetrix HG-U133 Plus 2.0 chip according to the protocols provided by the manufacturer.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 from Affymetrix.
| | Sample_data_processing | Data were normalized with Bioconductor software using the RMA algorithm.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Raquel,,Malumbres
| | Sample_contact_email | rmalumbres@yahoo.com
| | Sample_contact_phone | +34 948194700
| | Sample_contact_laboratory | Molecular Oncology
| | Sample_contact_department | Oncology
| | Sample_contact_institute | University of Navarra/ Center for Applied Medical Research
| | Sample_contact_address | Avenida Pio XII 55
| | Sample_contact_city | Pamplona
| | Sample_contact_state | Navarra
| | Sample_contact_zip/postal_code | 31008
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1035nnn/GSM1035348/suppl/GSM1035348_SSK_41_R2.CEL.gz
| | Sample_series_id | GSE42203
| | Sample_series_id | GSE42204
| | Sample_data_row_count | 54675
| | |
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