Search results for the GEO ID: GSE42253  |
(Click on the check boxes provided under "Select for analysis", to initiate grouping) |
(Once the selection is made, click on "Add groups" in "Make groups for comparison", to make a group. Scroll down) |
|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM1036305 | GPL570 |
|
Untreated CD4 T cells
|
Untreated CD4 T cells
|
cell type: CD4 T cells
treatment: none
|
JB1
Gene expression data from untreated CD4 cells.
|
| Sample_geo_accession | GSM1036305
| | Sample_status | Public on Nov 14 2012
| | Sample_submission_date | Nov 13 2012
| | Sample_last_update_date | Nov 14 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | The cells were grown in RPMI media with 10% human AB serum.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The RNA was extracted using RNeasy technology by Qiagen.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | Fragmented cRNA were hybridized to Affymetrix Human Genome U133 Plus 2.0 chips overnight at 45°C.
| | Sample_scan_protocol | The chips were scanned using an Affymetrix GeneChip scanner.
| | Sample_data_processing | dChip software was used for normalization and expression computation.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Aditya,A,Munshi
| | Sample_contact_email | aditya_munshi@dfci.harvard.edu
| | Sample_contact_department | Department of Medical Oncology
| | Sample_contact_institute | Dana Farber Cancer Institute
| | Sample_contact_address | 44 Binney St
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1036nnn/GSM1036305/suppl/GSM1036305_YT2005110135.CEL.gz
| | Sample_series_id | GSE42253
| | Sample_data_row_count | 54675
| | |
|
GSM1036306 | GPL570 |
|
Hsp90 inhibitor-treated CD4 T cells
|
Hsp90 inhibitor-treated CD4 T cells
|
cell type: CD4 T cells
treatment: Hsp90 inhibitor
|
JB2
Gene expression data from CD4 cells treated with Hsp90 inhibitor.
|
| Sample_geo_accession | GSM1036306
| | Sample_status | Public on Nov 14 2012
| | Sample_submission_date | Nov 13 2012
| | Sample_last_update_date | Nov 14 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | HSP90 inhibitor (Geldanamycin) treatment.
| | Sample_growth_protocol_ch1 | The cells were grown in RPMI media with 10% human AB serum.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The RNA was extracted using RNeasy technology by Qiagen.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | Fragmented cRNA were hybridized to Affymetrix Human Genome U133 Plus 2.0 chips overnight at 45°C.
| | Sample_scan_protocol | The chips were scanned using an Affymetrix GeneChip scanner.
| | Sample_data_processing | dChip software was used for normalization and expression computation.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Aditya,A,Munshi
| | Sample_contact_email | aditya_munshi@dfci.harvard.edu
| | Sample_contact_department | Department of Medical Oncology
| | Sample_contact_institute | Dana Farber Cancer Institute
| | Sample_contact_address | 44 Binney St
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1036nnn/GSM1036306/suppl/GSM1036306_YT2005110136.CEL.gz
| | Sample_series_id | GSE42253
| | Sample_data_row_count | 54675
| | |
|
GSM1036307 | GPL570 |
|
Untreated CD8 T cells
|
Untreated CD8 T cells
|
cell type: CD8 T cells
treatment: none
|
JB3
Gene expression data from untreated CD8 cells.
|
| Sample_geo_accession | GSM1036307
| | Sample_status | Public on Nov 14 2012
| | Sample_submission_date | Nov 13 2012
| | Sample_last_update_date | Nov 14 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | The cells were grown in RPMI media with 10% human AB serum.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The RNA was extracted using RNeasy technology by Qiagen.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | Fragmented cRNA were hybridized to Affymetrix Human Genome U133 Plus 2.0 chips overnight at 45°C.
| | Sample_scan_protocol | The chips were scanned using an Affymetrix GeneChip scanner.
| | Sample_data_processing | dChip software was used for normalization and expression computation.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Aditya,A,Munshi
| | Sample_contact_email | aditya_munshi@dfci.harvard.edu
| | Sample_contact_department | Department of Medical Oncology
| | Sample_contact_institute | Dana Farber Cancer Institute
| | Sample_contact_address | 44 Binney St
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1036nnn/GSM1036307/suppl/GSM1036307_YT2005110137.CEL.gz
| | Sample_series_id | GSE42253
| | Sample_data_row_count | 54675
| | |
|
GSM1036308 | GPL570 |
|
Hsp90 inhibitor-treated CD8 T cells
|
Hsp90 inhibitor-treated CD8 T cells
|
cell type: CD8 T cells
treatment: Hsp90 inhibitor
|
JB4
Gene expression data from CD8 cells treated with Hsp90 inhibitor.
|
| Sample_geo_accession | GSM1036308
| | Sample_status | Public on Nov 14 2012
| | Sample_submission_date | Nov 13 2012
| | Sample_last_update_date | Nov 14 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | HSP90 inhibitor (Geldanamycin) treatment.
| | Sample_growth_protocol_ch1 | The cells were grown in RPMI media with 10% human AB serum.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The RNA was extracted using RNeasy technology by Qiagen.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | Fragmented cRNA were hybridized to Affymetrix Human Genome U133 Plus 2.0 chips overnight at 45°C.
| | Sample_scan_protocol | The chips were scanned using an Affymetrix GeneChip scanner.
| | Sample_data_processing | dChip software was used for normalization and expression computation.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Aditya,A,Munshi
| | Sample_contact_email | aditya_munshi@dfci.harvard.edu
| | Sample_contact_department | Department of Medical Oncology
| | Sample_contact_institute | Dana Farber Cancer Institute
| | Sample_contact_address | 44 Binney St
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1036nnn/GSM1036308/suppl/GSM1036308_YT2005110138.CEL.gz
| | Sample_series_id | GSE42253
| | Sample_data_row_count | 54675
| | |
|
GSM1036309 | GPL570 |
|
Untreated NK cells
|
Untreated NK cells
|
cell type: NK cells
treatment: none
|
JB5
Gene expression data from untreated NK cells.
|
| Sample_geo_accession | GSM1036309
| | Sample_status | Public on Nov 14 2012
| | Sample_submission_date | Nov 13 2012
| | Sample_last_update_date | Nov 14 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | The cells were grown in RPMI media with 10% human AB serum.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The RNA was extracted using RNeasy technology by Qiagen.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | Fragmented cRNA were hybridized to Affymetrix Human Genome U133 Plus 2.0 chips overnight at 45°C.
| | Sample_scan_protocol | The chips were scanned using an Affymetrix GeneChip scanner.
| | Sample_data_processing | dChip software was used for normalization and expression computation.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Aditya,A,Munshi
| | Sample_contact_email | aditya_munshi@dfci.harvard.edu
| | Sample_contact_department | Department of Medical Oncology
| | Sample_contact_institute | Dana Farber Cancer Institute
| | Sample_contact_address | 44 Binney St
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1036nnn/GSM1036309/suppl/GSM1036309_YT2005110139.CEL.gz
| | Sample_series_id | GSE42253
| | Sample_data_row_count | 54675
| | |
|
GSM1036310 | GPL570 |
|
Hsp90 inhibitor-treated NK cells
|
Hsp90 inhibitor-treated NK cells
|
cell type: NK cells
treatment: Hsp90 inhibitor
|
JB6
Gene expression data from NK cells treated with Hsp90 inhibitor.
|
| Sample_geo_accession | GSM1036310
| | Sample_status | Public on Nov 14 2012
| | Sample_submission_date | Nov 13 2012
| | Sample_last_update_date | Nov 14 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | HSP90 inhibitor (Geldanamycin) treatment.
| | Sample_growth_protocol_ch1 | The cells were grown in RPMI media with 10% human AB serum.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The RNA was extracted using RNeasy technology by Qiagen.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | Fragmented cRNA were hybridized to Affymetrix Human Genome U133 Plus 2.0 chips overnight at 45°C.
| | Sample_scan_protocol | The chips were scanned using an Affymetrix GeneChip scanner.
| | Sample_data_processing | dChip software was used for normalization and expression computation.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Aditya,A,Munshi
| | Sample_contact_email | aditya_munshi@dfci.harvard.edu
| | Sample_contact_department | Department of Medical Oncology
| | Sample_contact_institute | Dana Farber Cancer Institute
| | Sample_contact_address | 44 Binney St
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1036nnn/GSM1036310/suppl/GSM1036310_YT2005110140.CEL.gz
| | Sample_series_id | GSE42253
| | Sample_data_row_count | 54675
| | |
|
| |
| |
Make groups for comparisons |
(2 groups will be compared at a time) |
|
| Select GSMs and click on "Add groups" |
Enter the group name here: |
|
|
|
