Search results for the GEO ID: GSE42392  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM1038716 | GPL570 |
|
CUP patient 1
|
metastatic lesion
|
tissue: lymph node
disease state: cancer of unknown primary
|
|
| Sample_geo_accession | GSM1038716
| | Sample_status | Public on Nov 20 2012
| | Sample_submission_date | Nov 19 2012
| | Sample_last_update_date | Nov 20 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The mRNA extraction was done using the Isogen protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNAs were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | IVT products were magnetic-bead purified, frangmented, and hybridized onto Affymetrix U133 plus 2.0 GeneChip at 45° C for 16 h.
| | Sample_scan_protocol | Scanner in an Affymetrix GeneChip Scanner 3000 7G (Santa Clara, CA).
| | Sample_data_processing | Data extraction was done by the Affymetrix GCOS software v1.4.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yoshihiko,,Fujita
| | Sample_contact_email | fujita@med.kindai.ac.jp
| | Sample_contact_institute | Kinki university School of Medicine
| | Sample_contact_address | 377-2 Ohno-Higashi
| | Sample_contact_city | Osaka-Sayama
| | Sample_contact_zip/postal_code | 589-8511
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1038nnn/GSM1038716/suppl/GSM1038716_ID_01.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1038nnn/GSM1038716/suppl/GSM1038716_ID_01.CHP.gz
| | Sample_series_id | GSE42392
| | Sample_data_row_count | 54675
| | |
|
GSM1038717 | GPL570 |
|
CUP patient 2
|
metastatic lesion
|
tissue: lymph node
disease state: cancer of unknown primary
|
|
| Sample_geo_accession | GSM1038717
| | Sample_status | Public on Nov 20 2012
| | Sample_submission_date | Nov 19 2012
| | Sample_last_update_date | Nov 20 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The mRNA extraction was done using the Isogen protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNAs were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | IVT products were magnetic-bead purified, frangmented, and hybridized onto Affymetrix U133 plus 2.0 GeneChip at 45° C for 16 h.
| | Sample_scan_protocol | Scanner in an Affymetrix GeneChip Scanner 3000 7G (Santa Clara, CA).
| | Sample_data_processing | Data extraction was done by the Affymetrix GCOS software v1.4.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yoshihiko,,Fujita
| | Sample_contact_email | fujita@med.kindai.ac.jp
| | Sample_contact_institute | Kinki university School of Medicine
| | Sample_contact_address | 377-2 Ohno-Higashi
| | Sample_contact_city | Osaka-Sayama
| | Sample_contact_zip/postal_code | 589-8511
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1038nnn/GSM1038717/suppl/GSM1038717_ID_02.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1038nnn/GSM1038717/suppl/GSM1038717_ID_02.CHP.gz
| | Sample_series_id | GSE42392
| | Sample_data_row_count | 54675
| | |
|
GSM1038718 | GPL570 |
|
CUP patient 3
|
metastatic lesion
|
tissue: lymph node
disease state: cancer of unknown primary
|
|
| Sample_geo_accession | GSM1038718
| | Sample_status | Public on Nov 20 2012
| | Sample_submission_date | Nov 19 2012
| | Sample_last_update_date | Nov 20 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The mRNA extraction was done using the Isogen protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNAs were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | IVT products were magnetic-bead purified, frangmented, and hybridized onto Affymetrix U133 plus 2.0 GeneChip at 45° C for 16 h.
| | Sample_scan_protocol | Scanner in an Affymetrix GeneChip Scanner 3000 7G (Santa Clara, CA).
| | Sample_data_processing | Data extraction was done by the Affymetrix GCOS software v1.4.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yoshihiko,,Fujita
| | Sample_contact_email | fujita@med.kindai.ac.jp
| | Sample_contact_institute | Kinki university School of Medicine
| | Sample_contact_address | 377-2 Ohno-Higashi
| | Sample_contact_city | Osaka-Sayama
| | Sample_contact_zip/postal_code | 589-8511
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1038nnn/GSM1038718/suppl/GSM1038718_ID_03.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1038nnn/GSM1038718/suppl/GSM1038718_ID_03.CHP.gz
| | Sample_series_id | GSE42392
| | Sample_data_row_count | 54675
| | |
|
GSM1038719 | GPL570 |
|
CUP patient 4
|
metastatic lesion
|
tissue: lymph node
disease state: cancer of unknown primary
|
|
| Sample_geo_accession | GSM1038719
| | Sample_status | Public on Nov 20 2012
| | Sample_submission_date | Nov 19 2012
| | Sample_last_update_date | Nov 20 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The mRNA extraction was done using the Isogen protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNAs were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | IVT products were magnetic-bead purified, frangmented, and hybridized onto Affymetrix U133 plus 2.0 GeneChip at 45° C for 16 h.
| | Sample_scan_protocol | Scanner in an Affymetrix GeneChip Scanner 3000 7G (Santa Clara, CA).
| | Sample_data_processing | Data extraction was done by the Affymetrix GCOS software v1.4.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yoshihiko,,Fujita
| | Sample_contact_email | fujita@med.kindai.ac.jp
| | Sample_contact_institute | Kinki university School of Medicine
| | Sample_contact_address | 377-2 Ohno-Higashi
| | Sample_contact_city | Osaka-Sayama
| | Sample_contact_zip/postal_code | 589-8511
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1038nnn/GSM1038719/suppl/GSM1038719_ID_04.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1038nnn/GSM1038719/suppl/GSM1038719_ID_04.CHP.gz
| | Sample_series_id | GSE42392
| | Sample_data_row_count | 54675
| | |
|
GSM1038720 | GPL570 |
|
CUP patient 5
|
metastatic lesion
|
tissue: lymph node
disease state: cancer of unknown primary
|
|
| Sample_geo_accession | GSM1038720
| | Sample_status | Public on Nov 20 2012
| | Sample_submission_date | Nov 19 2012
| | Sample_last_update_date | Nov 20 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The mRNA extraction was done using the Isogen protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNAs were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | IVT products were magnetic-bead purified, frangmented, and hybridized onto Affymetrix U133 plus 2.0 GeneChip at 45° C for 16 h.
| | Sample_scan_protocol | Scanner in an Affymetrix GeneChip Scanner 3000 7G (Santa Clara, CA).
| | Sample_data_processing | Data extraction was done by the Affymetrix GCOS software v1.4.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yoshihiko,,Fujita
| | Sample_contact_email | fujita@med.kindai.ac.jp
| | Sample_contact_institute | Kinki university School of Medicine
| | Sample_contact_address | 377-2 Ohno-Higashi
| | Sample_contact_city | Osaka-Sayama
| | Sample_contact_zip/postal_code | 589-8511
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1038nnn/GSM1038720/suppl/GSM1038720_ID_05.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1038nnn/GSM1038720/suppl/GSM1038720_ID_05.CHP.gz
| | Sample_series_id | GSE42392
| | Sample_data_row_count | 54675
| | |
|
GSM1038721 | GPL570 |
|
CUP patient 6
|
metastatic lesion
|
tissue: lymph node
disease state: cancer of unknown primary
|
|
| Sample_geo_accession | GSM1038721
| | Sample_status | Public on Nov 20 2012
| | Sample_submission_date | Nov 19 2012
| | Sample_last_update_date | Nov 20 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The mRNA extraction was done using the Isogen protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNAs were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | IVT products were magnetic-bead purified, frangmented, and hybridized onto Affymetrix U133 plus 2.0 GeneChip at 45° C for 16 h.
| | Sample_scan_protocol | Scanner in an Affymetrix GeneChip Scanner 3000 7G (Santa Clara, CA).
| | Sample_data_processing | Data extraction was done by the Affymetrix GCOS software v1.4.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yoshihiko,,Fujita
| | Sample_contact_email | fujita@med.kindai.ac.jp
| | Sample_contact_institute | Kinki university School of Medicine
| | Sample_contact_address | 377-2 Ohno-Higashi
| | Sample_contact_city | Osaka-Sayama
| | Sample_contact_zip/postal_code | 589-8511
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1038nnn/GSM1038721/suppl/GSM1038721_ID_06.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1038nnn/GSM1038721/suppl/GSM1038721_ID_06.CHP.gz
| | Sample_series_id | GSE42392
| | Sample_data_row_count | 54675
| | |
|
GSM1038722 | GPL570 |
|
CUP patient 7
|
metastatic lesion
|
tissue: lymph node
disease state: cancer of unknown primary
|
|
| Sample_geo_accession | GSM1038722
| | Sample_status | Public on Nov 20 2012
| | Sample_submission_date | Nov 19 2012
| | Sample_last_update_date | Nov 20 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The mRNA extraction was done using the Isogen protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNAs were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | IVT products were magnetic-bead purified, frangmented, and hybridized onto Affymetrix U133 plus 2.0 GeneChip at 45° C for 16 h.
| | Sample_scan_protocol | Scanner in an Affymetrix GeneChip Scanner 3000 7G (Santa Clara, CA).
| | Sample_data_processing | Data extraction was done by the Affymetrix GCOS software v1.4.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yoshihiko,,Fujita
| | Sample_contact_email | fujita@med.kindai.ac.jp
| | Sample_contact_institute | Kinki university School of Medicine
| | Sample_contact_address | 377-2 Ohno-Higashi
| | Sample_contact_city | Osaka-Sayama
| | Sample_contact_zip/postal_code | 589-8511
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1038nnn/GSM1038722/suppl/GSM1038722_ID_07.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1038nnn/GSM1038722/suppl/GSM1038722_ID_07.CHP.gz
| | Sample_series_id | GSE42392
| | Sample_data_row_count | 54675
| | |
|
GSM1038723 | GPL570 |
|
CUP patient 8
|
metastatic lesion
|
tissue: lymph node
disease state: cancer of unknown primary
|
|
| Sample_geo_accession | GSM1038723
| | Sample_status | Public on Nov 20 2012
| | Sample_submission_date | Nov 19 2012
| | Sample_last_update_date | Nov 20 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The mRNA extraction was done using the Isogen protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNAs were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | IVT products were magnetic-bead purified, frangmented, and hybridized onto Affymetrix U133 plus 2.0 GeneChip at 45° C for 16 h.
| | Sample_scan_protocol | Scanner in an Affymetrix GeneChip Scanner 3000 7G (Santa Clara, CA).
| | Sample_data_processing | Data extraction was done by the Affymetrix GCOS software v1.4.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yoshihiko,,Fujita
| | Sample_contact_email | fujita@med.kindai.ac.jp
| | Sample_contact_institute | Kinki university School of Medicine
| | Sample_contact_address | 377-2 Ohno-Higashi
| | Sample_contact_city | Osaka-Sayama
| | Sample_contact_zip/postal_code | 589-8511
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1038nnn/GSM1038723/suppl/GSM1038723_ID_08.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1038nnn/GSM1038723/suppl/GSM1038723_ID_08.CHP.gz
| | Sample_series_id | GSE42392
| | Sample_data_row_count | 54675
| | |
|
GSM1038724 | GPL570 |
|
CUP patient 9
|
metastatic lesion
|
tissue: lymph node
disease state: cancer of unknown primary
|
|
| Sample_geo_accession | GSM1038724
| | Sample_status | Public on Nov 20 2012
| | Sample_submission_date | Nov 19 2012
| | Sample_last_update_date | Nov 20 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The mRNA extraction was done using the Isogen protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNAs were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | IVT products were magnetic-bead purified, frangmented, and hybridized onto Affymetrix U133 plus 2.0 GeneChip at 45° C for 16 h.
| | Sample_scan_protocol | Scanner in an Affymetrix GeneChip Scanner 3000 7G (Santa Clara, CA).
| | Sample_data_processing | Data extraction was done by the Affymetrix GCOS software v1.4.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yoshihiko,,Fujita
| | Sample_contact_email | fujita@med.kindai.ac.jp
| | Sample_contact_institute | Kinki university School of Medicine
| | Sample_contact_address | 377-2 Ohno-Higashi
| | Sample_contact_city | Osaka-Sayama
| | Sample_contact_zip/postal_code | 589-8511
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1038nnn/GSM1038724/suppl/GSM1038724_ID_09.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1038nnn/GSM1038724/suppl/GSM1038724_ID_09.CHP.gz
| | Sample_series_id | GSE42392
| | Sample_data_row_count | 54675
| | |
|
GSM1038725 | GPL570 |
|
CUP patient 10
|
metastatic lesion
|
tissue: ascites/hydrothorax
disease state: cancer of unknown primary
|
|
| Sample_geo_accession | GSM1038725
| | Sample_status | Public on Nov 20 2012
| | Sample_submission_date | Nov 19 2012
| | Sample_last_update_date | Nov 20 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The mRNA extraction was done using the Isogen protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNAs were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | IVT products were magnetic-bead purified, frangmented, and hybridized onto Affymetrix U133 plus 2.0 GeneChip at 45° C for 16 h.
| | Sample_scan_protocol | Scanner in an Affymetrix GeneChip Scanner 3000 7G (Santa Clara, CA).
| | Sample_data_processing | Data extraction was done by the Affymetrix GCOS software v1.4.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yoshihiko,,Fujita
| | Sample_contact_email | fujita@med.kindai.ac.jp
| | Sample_contact_institute | Kinki university School of Medicine
| | Sample_contact_address | 377-2 Ohno-Higashi
| | Sample_contact_city | Osaka-Sayama
| | Sample_contact_zip/postal_code | 589-8511
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1038nnn/GSM1038725/suppl/GSM1038725_ID_10.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1038nnn/GSM1038725/suppl/GSM1038725_ID_10.CHP.gz
| | Sample_series_id | GSE42392
| | Sample_data_row_count | 54675
| | |
|
GSM1038726 | GPL570 |
|
CUP patient 11
|
metastatic lesion
|
tissue: ascites/hydrothorax
disease state: cancer of unknown primary
|
|
| Sample_geo_accession | GSM1038726
| | Sample_status | Public on Nov 20 2012
| | Sample_submission_date | Nov 19 2012
| | Sample_last_update_date | Nov 20 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The mRNA extraction was done using the Isogen protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNAs were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | IVT products were magnetic-bead purified, frangmented, and hybridized onto Affymetrix U133 plus 2.0 GeneChip at 45° C for 16 h.
| | Sample_scan_protocol | Scanner in an Affymetrix GeneChip Scanner 3000 7G (Santa Clara, CA).
| | Sample_data_processing | Data extraction was done by the Affymetrix GCOS software v1.4.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yoshihiko,,Fujita
| | Sample_contact_email | fujita@med.kindai.ac.jp
| | Sample_contact_institute | Kinki university School of Medicine
| | Sample_contact_address | 377-2 Ohno-Higashi
| | Sample_contact_city | Osaka-Sayama
| | Sample_contact_zip/postal_code | 589-8511
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1038nnn/GSM1038726/suppl/GSM1038726_ID_11.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1038nnn/GSM1038726/suppl/GSM1038726_ID_11.CHP.gz
| | Sample_series_id | GSE42392
| | Sample_data_row_count | 54675
| | |
|
GSM1038727 | GPL570 |
|
CUP patient 12
|
metastatic lesion
|
tissue: lymph node
disease state: cancer of unknown primary
|
|
| Sample_geo_accession | GSM1038727
| | Sample_status | Public on Nov 20 2012
| | Sample_submission_date | Nov 19 2012
| | Sample_last_update_date | Nov 20 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The mRNA extraction was done using the Isogen protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNAs were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | IVT products were magnetic-bead purified, frangmented, and hybridized onto Affymetrix U133 plus 2.0 GeneChip at 45° C for 16 h.
| | Sample_scan_protocol | Scanner in an Affymetrix GeneChip Scanner 3000 7G (Santa Clara, CA).
| | Sample_data_processing | Data extraction was done by the Affymetrix GCOS software v1.4.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yoshihiko,,Fujita
| | Sample_contact_email | fujita@med.kindai.ac.jp
| | Sample_contact_institute | Kinki university School of Medicine
| | Sample_contact_address | 377-2 Ohno-Higashi
| | Sample_contact_city | Osaka-Sayama
| | Sample_contact_zip/postal_code | 589-8511
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1038nnn/GSM1038727/suppl/GSM1038727_ID_12.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1038nnn/GSM1038727/suppl/GSM1038727_ID_12.CHP.gz
| | Sample_series_id | GSE42392
| | Sample_data_row_count | 54675
| | |
|
GSM1038728 | GPL570 |
|
CUP patient 13
|
metastatic lesion
|
tissue: lymph node
disease state: cancer of unknown primary
|
|
| Sample_geo_accession | GSM1038728
| | Sample_status | Public on Nov 20 2012
| | Sample_submission_date | Nov 19 2012
| | Sample_last_update_date | Nov 20 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The mRNA extraction was done using the Isogen protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNAs were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | IVT products were magnetic-bead purified, frangmented, and hybridized onto Affymetrix U133 plus 2.0 GeneChip at 45° C for 16 h.
| | Sample_scan_protocol | Scanner in an Affymetrix GeneChip Scanner 3000 7G (Santa Clara, CA).
| | Sample_data_processing | Data extraction was done by the Affymetrix GCOS software v1.4.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yoshihiko,,Fujita
| | Sample_contact_email | fujita@med.kindai.ac.jp
| | Sample_contact_institute | Kinki university School of Medicine
| | Sample_contact_address | 377-2 Ohno-Higashi
| | Sample_contact_city | Osaka-Sayama
| | Sample_contact_zip/postal_code | 589-8511
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1038nnn/GSM1038728/suppl/GSM1038728_ID_13.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1038nnn/GSM1038728/suppl/GSM1038728_ID_13.CHP.gz
| | Sample_series_id | GSE42392
| | Sample_data_row_count | 54675
| | |
|
GSM1038729 | GPL570 |
|
CUP patient 14
|
metastatic lesion
|
tissue: lymph node
disease state: cancer of unknown primary
|
|
| Sample_geo_accession | GSM1038729
| | Sample_status | Public on Nov 20 2012
| | Sample_submission_date | Nov 19 2012
| | Sample_last_update_date | Nov 20 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The mRNA extraction was done using the Isogen protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNAs were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | IVT products were magnetic-bead purified, frangmented, and hybridized onto Affymetrix U133 plus 2.0 GeneChip at 45° C for 16 h.
| | Sample_scan_protocol | Scanner in an Affymetrix GeneChip Scanner 3000 7G (Santa Clara, CA).
| | Sample_data_processing | Data extraction was done by the Affymetrix GCOS software v1.4.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yoshihiko,,Fujita
| | Sample_contact_email | fujita@med.kindai.ac.jp
| | Sample_contact_institute | Kinki university School of Medicine
| | Sample_contact_address | 377-2 Ohno-Higashi
| | Sample_contact_city | Osaka-Sayama
| | Sample_contact_zip/postal_code | 589-8511
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1038nnn/GSM1038729/suppl/GSM1038729_ID_14.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1038nnn/GSM1038729/suppl/GSM1038729_ID_14.CHP.gz
| | Sample_series_id | GSE42392
| | Sample_data_row_count | 54675
| | |
|
GSM1038730 | GPL570 |
|
CUP patient 15
|
metastatic lesion
|
tissue: lymph node
disease state: cancer of unknown primary
|
|
| Sample_geo_accession | GSM1038730
| | Sample_status | Public on Nov 20 2012
| | Sample_submission_date | Nov 19 2012
| | Sample_last_update_date | Nov 20 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The mRNA extraction was done using the Isogen protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNAs were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | IVT products were magnetic-bead purified, frangmented, and hybridized onto Affymetrix U133 plus 2.0 GeneChip at 45° C for 16 h.
| | Sample_scan_protocol | Scanner in an Affymetrix GeneChip Scanner 3000 7G (Santa Clara, CA).
| | Sample_data_processing | Data extraction was done by the Affymetrix GCOS software v1.4.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yoshihiko,,Fujita
| | Sample_contact_email | fujita@med.kindai.ac.jp
| | Sample_contact_institute | Kinki university School of Medicine
| | Sample_contact_address | 377-2 Ohno-Higashi
| | Sample_contact_city | Osaka-Sayama
| | Sample_contact_zip/postal_code | 589-8511
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1038nnn/GSM1038730/suppl/GSM1038730_ID_15.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1038nnn/GSM1038730/suppl/GSM1038730_ID_15.CHP.gz
| | Sample_series_id | GSE42392
| | Sample_data_row_count | 54675
| | |
|
GSM1038731 | GPL570 |
|
CUP patient 16
|
metastatic lesion
|
tissue: lymph node
disease state: cancer of unknown primary
|
|
| Sample_geo_accession | GSM1038731
| | Sample_status | Public on Nov 20 2012
| | Sample_submission_date | Nov 19 2012
| | Sample_last_update_date | Nov 20 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The mRNA extraction was done using the Isogen protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNAs were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | IVT products were magnetic-bead purified, frangmented, and hybridized onto Affymetrix U133 plus 2.0 GeneChip at 45° C for 16 h.
| | Sample_scan_protocol | Scanner in an Affymetrix GeneChip Scanner 3000 7G (Santa Clara, CA).
| | Sample_data_processing | Data extraction was done by the Affymetrix GCOS software v1.4.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yoshihiko,,Fujita
| | Sample_contact_email | fujita@med.kindai.ac.jp
| | Sample_contact_institute | Kinki university School of Medicine
| | Sample_contact_address | 377-2 Ohno-Higashi
| | Sample_contact_city | Osaka-Sayama
| | Sample_contact_zip/postal_code | 589-8511
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1038nnn/GSM1038731/suppl/GSM1038731_ID_16.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1038nnn/GSM1038731/suppl/GSM1038731_ID_16.CHP.gz
| | Sample_series_id | GSE42392
| | Sample_data_row_count | 54675
| | |
|
GSM1038732 | GPL570 |
|
CUP patient 17
|
metastatic lesion
|
tissue: lymph node
disease state: cancer of unknown primary
|
|
| Sample_geo_accession | GSM1038732
| | Sample_status | Public on Nov 20 2012
| | Sample_submission_date | Nov 19 2012
| | Sample_last_update_date | Nov 20 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The mRNA extraction was done using the Isogen protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNAs were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | IVT products were magnetic-bead purified, frangmented, and hybridized onto Affymetrix U133 plus 2.0 GeneChip at 45° C for 16 h.
| | Sample_scan_protocol | Scanner in an Affymetrix GeneChip Scanner 3000 7G (Santa Clara, CA).
| | Sample_data_processing | Data extraction was done by the Affymetrix GCOS software v1.4.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yoshihiko,,Fujita
| | Sample_contact_email | fujita@med.kindai.ac.jp
| | Sample_contact_institute | Kinki university School of Medicine
| | Sample_contact_address | 377-2 Ohno-Higashi
| | Sample_contact_city | Osaka-Sayama
| | Sample_contact_zip/postal_code | 589-8511
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1038nnn/GSM1038732/suppl/GSM1038732_ID_17.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1038nnn/GSM1038732/suppl/GSM1038732_ID_17.CHP.gz
| | Sample_series_id | GSE42392
| | Sample_data_row_count | 54675
| | |
|
GSM1038733 | GPL570 |
|
CUP patient 18
|
metastatic lesion
|
tissue: lymph node
disease state: cancer of unknown primary
|
|
| Sample_geo_accession | GSM1038733
| | Sample_status | Public on Nov 20 2012
| | Sample_submission_date | Nov 19 2012
| | Sample_last_update_date | Nov 20 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The mRNA extraction was done using the Isogen protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNAs were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | IVT products were magnetic-bead purified, frangmented, and hybridized onto Affymetrix U133 plus 2.0 GeneChip at 45° C for 16 h.
| | Sample_scan_protocol | Scanner in an Affymetrix GeneChip Scanner 3000 7G (Santa Clara, CA).
| | Sample_data_processing | Data extraction was done by the Affymetrix GCOS software v1.4.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yoshihiko,,Fujita
| | Sample_contact_email | fujita@med.kindai.ac.jp
| | Sample_contact_institute | Kinki university School of Medicine
| | Sample_contact_address | 377-2 Ohno-Higashi
| | Sample_contact_city | Osaka-Sayama
| | Sample_contact_zip/postal_code | 589-8511
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1038nnn/GSM1038733/suppl/GSM1038733_ID_18.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1038nnn/GSM1038733/suppl/GSM1038733_ID_18.CHP.gz
| | Sample_series_id | GSE42392
| | Sample_data_row_count | 54675
| | |
|
GSM1038734 | GPL570 |
|
CUP patient 19
|
metastatic lesion
|
tissue: lymph node
disease state: cancer of unknown primary
|
|
| Sample_geo_accession | GSM1038734
| | Sample_status | Public on Nov 20 2012
| | Sample_submission_date | Nov 19 2012
| | Sample_last_update_date | Nov 20 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The mRNA extraction was done using the Isogen protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNAs were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | IVT products were magnetic-bead purified, frangmented, and hybridized onto Affymetrix U133 plus 2.0 GeneChip at 45° C for 16 h.
| | Sample_scan_protocol | Scanner in an Affymetrix GeneChip Scanner 3000 7G (Santa Clara, CA).
| | Sample_data_processing | Data extraction was done by the Affymetrix GCOS software v1.4.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yoshihiko,,Fujita
| | Sample_contact_email | fujita@med.kindai.ac.jp
| | Sample_contact_institute | Kinki university School of Medicine
| | Sample_contact_address | 377-2 Ohno-Higashi
| | Sample_contact_city | Osaka-Sayama
| | Sample_contact_zip/postal_code | 589-8511
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1038nnn/GSM1038734/suppl/GSM1038734_ID_19.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1038nnn/GSM1038734/suppl/GSM1038734_ID_19.CHP.gz
| | Sample_series_id | GSE42392
| | Sample_data_row_count | 54675
| | |
|
GSM1038735 | GPL570 |
|
CUP patient 20
|
metastatic lesion
|
tissue: lymph node
disease state: cancer of unknown primary
|
|
| Sample_geo_accession | GSM1038735
| | Sample_status | Public on Nov 20 2012
| | Sample_submission_date | Nov 19 2012
| | Sample_last_update_date | Nov 20 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The mRNA extraction was done using the Isogen protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNAs were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | IVT products were magnetic-bead purified, frangmented, and hybridized onto Affymetrix U133 plus 2.0 GeneChip at 45° C for 16 h.
| | Sample_scan_protocol | Scanner in an Affymetrix GeneChip Scanner 3000 7G (Santa Clara, CA).
| | Sample_data_processing | Data extraction was done by the Affymetrix GCOS software v1.4.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yoshihiko,,Fujita
| | Sample_contact_email | fujita@med.kindai.ac.jp
| | Sample_contact_institute | Kinki university School of Medicine
| | Sample_contact_address | 377-2 Ohno-Higashi
| | Sample_contact_city | Osaka-Sayama
| | Sample_contact_zip/postal_code | 589-8511
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1038nnn/GSM1038735/suppl/GSM1038735_ID_20.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1038nnn/GSM1038735/suppl/GSM1038735_ID_20.CHP.gz
| | Sample_series_id | GSE42392
| | Sample_data_row_count | 54675
| | |
|
GSM1038736 | GPL570 |
|
CUP patient 21
|
metastatic lesion
|
tissue: lymph node
disease state: cancer of unknown primary
|
|
| Sample_geo_accession | GSM1038736
| | Sample_status | Public on Nov 20 2012
| | Sample_submission_date | Nov 19 2012
| | Sample_last_update_date | Nov 20 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The mRNA extraction was done using the Isogen protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNAs were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | IVT products were magnetic-bead purified, frangmented, and hybridized onto Affymetrix U133 plus 2.0 GeneChip at 45° C for 16 h.
| | Sample_scan_protocol | Scanner in an Affymetrix GeneChip Scanner 3000 7G (Santa Clara, CA).
| | Sample_data_processing | Data extraction was done by the Affymetrix GCOS software v1.4.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yoshihiko,,Fujita
| | Sample_contact_email | fujita@med.kindai.ac.jp
| | Sample_contact_institute | Kinki university School of Medicine
| | Sample_contact_address | 377-2 Ohno-Higashi
| | Sample_contact_city | Osaka-Sayama
| | Sample_contact_zip/postal_code | 589-8511
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1038nnn/GSM1038736/suppl/GSM1038736_ID_21.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1038nnn/GSM1038736/suppl/GSM1038736_ID_21.CHP.gz
| | Sample_series_id | GSE42392
| | Sample_data_row_count | 54675
| | |
|
GSM1038737 | GPL570 |
|
CUP patient 22
|
metastatic lesion
|
tissue: lymph node
disease state: cancer of unknown primary
|
|
| Sample_geo_accession | GSM1038737
| | Sample_status | Public on Nov 20 2012
| | Sample_submission_date | Nov 19 2012
| | Sample_last_update_date | Nov 20 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The mRNA extraction was done using the Isogen protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNAs were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | IVT products were magnetic-bead purified, frangmented, and hybridized onto Affymetrix U133 plus 2.0 GeneChip at 45° C for 16 h.
| | Sample_scan_protocol | Scanner in an Affymetrix GeneChip Scanner 3000 7G (Santa Clara, CA).
| | Sample_data_processing | Data extraction was done by the Affymetrix GCOS software v1.4.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yoshihiko,,Fujita
| | Sample_contact_email | fujita@med.kindai.ac.jp
| | Sample_contact_institute | Kinki university School of Medicine
| | Sample_contact_address | 377-2 Ohno-Higashi
| | Sample_contact_city | Osaka-Sayama
| | Sample_contact_zip/postal_code | 589-8511
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1038nnn/GSM1038737/suppl/GSM1038737_ID_22.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1038nnn/GSM1038737/suppl/GSM1038737_ID_22.CHP.gz
| | Sample_series_id | GSE42392
| | Sample_data_row_count | 54675
| | |
|
GSM1038738 | GPL570 |
|
CUP patient 23
|
metastatic lesion
|
tissue: lymph node
disease state: cancer of unknown primary
|
|
| Sample_geo_accession | GSM1038738
| | Sample_status | Public on Nov 20 2012
| | Sample_submission_date | Nov 19 2012
| | Sample_last_update_date | Nov 20 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The mRNA extraction was done using the Isogen protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNAs were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | IVT products were magnetic-bead purified, frangmented, and hybridized onto Affymetrix U133 plus 2.0 GeneChip at 45° C for 16 h.
| | Sample_scan_protocol | Scanner in an Affymetrix GeneChip Scanner 3000 7G (Santa Clara, CA).
| | Sample_data_processing | Data extraction was done by the Affymetrix GCOS software v1.4.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yoshihiko,,Fujita
| | Sample_contact_email | fujita@med.kindai.ac.jp
| | Sample_contact_institute | Kinki university School of Medicine
| | Sample_contact_address | 377-2 Ohno-Higashi
| | Sample_contact_city | Osaka-Sayama
| | Sample_contact_zip/postal_code | 589-8511
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1038nnn/GSM1038738/suppl/GSM1038738_ID_23.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1038nnn/GSM1038738/suppl/GSM1038738_ID_23.CHP.gz
| | Sample_series_id | GSE42392
| | Sample_data_row_count | 54675
| | |
|
GSM1038739 | GPL570 |
|
CUP patient 24
|
metastatic lesion
|
tissue: ascites/hydrothorax
disease state: cancer of unknown primary
|
|
| Sample_geo_accession | GSM1038739
| | Sample_status | Public on Nov 20 2012
| | Sample_submission_date | Nov 19 2012
| | Sample_last_update_date | Nov 20 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The mRNA extraction was done using the Isogen protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNAs were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | IVT products were magnetic-bead purified, frangmented, and hybridized onto Affymetrix U133 plus 2.0 GeneChip at 45° C for 16 h.
| | Sample_scan_protocol | Scanner in an Affymetrix GeneChip Scanner 3000 7G (Santa Clara, CA).
| | Sample_data_processing | Data extraction was done by the Affymetrix GCOS software v1.4.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yoshihiko,,Fujita
| | Sample_contact_email | fujita@med.kindai.ac.jp
| | Sample_contact_institute | Kinki university School of Medicine
| | Sample_contact_address | 377-2 Ohno-Higashi
| | Sample_contact_city | Osaka-Sayama
| | Sample_contact_zip/postal_code | 589-8511
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1038nnn/GSM1038739/suppl/GSM1038739_ID_24.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1038nnn/GSM1038739/suppl/GSM1038739_ID_24.CHP.gz
| | Sample_series_id | GSE42392
| | Sample_data_row_count | 54675
| | |
|
GSM1038740 | GPL570 |
|
CUP patient 25
|
metastatic lesion
|
tissue: lymph node
disease state: cancer of unknown primary
|
|
| Sample_geo_accession | GSM1038740
| | Sample_status | Public on Nov 20 2012
| | Sample_submission_date | Nov 19 2012
| | Sample_last_update_date | Nov 20 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The mRNA extraction was done using the Isogen protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNAs were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | IVT products were magnetic-bead purified, frangmented, and hybridized onto Affymetrix U133 plus 2.0 GeneChip at 45° C for 16 h.
| | Sample_scan_protocol | Scanner in an Affymetrix GeneChip Scanner 3000 7G (Santa Clara, CA).
| | Sample_data_processing | Data extraction was done by the Affymetrix GCOS software v1.4.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yoshihiko,,Fujita
| | Sample_contact_email | fujita@med.kindai.ac.jp
| | Sample_contact_institute | Kinki university School of Medicine
| | Sample_contact_address | 377-2 Ohno-Higashi
| | Sample_contact_city | Osaka-Sayama
| | Sample_contact_zip/postal_code | 589-8511
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1038nnn/GSM1038740/suppl/GSM1038740_ID_25.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1038nnn/GSM1038740/suppl/GSM1038740_ID_25.CHP.gz
| | Sample_series_id | GSE42392
| | Sample_data_row_count | 54675
| | |
|
GSM1038741 | GPL570 |
|
CUP patient 26
|
metastatic lesion
|
tissue: lymph node
disease state: cancer of unknown primary
|
|
| Sample_geo_accession | GSM1038741
| | Sample_status | Public on Nov 20 2012
| | Sample_submission_date | Nov 19 2012
| | Sample_last_update_date | Nov 20 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The mRNA extraction was done using the Isogen protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNAs were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | IVT products were magnetic-bead purified, frangmented, and hybridized onto Affymetrix U133 plus 2.0 GeneChip at 45° C for 16 h.
| | Sample_scan_protocol | Scanner in an Affymetrix GeneChip Scanner 3000 7G (Santa Clara, CA).
| | Sample_data_processing | Data extraction was done by the Affymetrix GCOS software v1.4.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yoshihiko,,Fujita
| | Sample_contact_email | fujita@med.kindai.ac.jp
| | Sample_contact_institute | Kinki university School of Medicine
| | Sample_contact_address | 377-2 Ohno-Higashi
| | Sample_contact_city | Osaka-Sayama
| | Sample_contact_zip/postal_code | 589-8511
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1038nnn/GSM1038741/suppl/GSM1038741_ID_26.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1038nnn/GSM1038741/suppl/GSM1038741_ID_26.CHP.gz
| | Sample_series_id | GSE42392
| | Sample_data_row_count | 54675
| | |
|
GSM1038742 | GPL570 |
|
CUP patient 27
|
metastatic lesion
|
tissue: lymph node
disease state: cancer of unknown primary
|
|
| Sample_geo_accession | GSM1038742
| | Sample_status | Public on Nov 20 2012
| | Sample_submission_date | Nov 19 2012
| | Sample_last_update_date | Nov 20 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The mRNA extraction was done using the Isogen protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNAs were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | IVT products were magnetic-bead purified, frangmented, and hybridized onto Affymetrix U133 plus 2.0 GeneChip at 45° C for 16 h.
| | Sample_scan_protocol | Scanner in an Affymetrix GeneChip Scanner 3000 7G (Santa Clara, CA).
| | Sample_data_processing | Data extraction was done by the Affymetrix GCOS software v1.4.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yoshihiko,,Fujita
| | Sample_contact_email | fujita@med.kindai.ac.jp
| | Sample_contact_institute | Kinki university School of Medicine
| | Sample_contact_address | 377-2 Ohno-Higashi
| | Sample_contact_city | Osaka-Sayama
| | Sample_contact_zip/postal_code | 589-8511
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1038nnn/GSM1038742/suppl/GSM1038742_ID_27.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1038nnn/GSM1038742/suppl/GSM1038742_ID_27.CHP.gz
| | Sample_series_id | GSE42392
| | Sample_data_row_count | 54675
| | |
|
GSM1038743 | GPL570 |
|
CUP patient 28
|
metastatic lesion
|
tissue: lymph node
disease state: cancer of unknown primary
|
|
| Sample_geo_accession | GSM1038743
| | Sample_status | Public on Nov 20 2012
| | Sample_submission_date | Nov 19 2012
| | Sample_last_update_date | Nov 20 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The mRNA extraction was done using the Isogen protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNAs were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | IVT products were magnetic-bead purified, frangmented, and hybridized onto Affymetrix U133 plus 2.0 GeneChip at 45° C for 16 h.
| | Sample_scan_protocol | Scanner in an Affymetrix GeneChip Scanner 3000 7G (Santa Clara, CA).
| | Sample_data_processing | Data extraction was done by the Affymetrix GCOS software v1.4.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yoshihiko,,Fujita
| | Sample_contact_email | fujita@med.kindai.ac.jp
| | Sample_contact_institute | Kinki university School of Medicine
| | Sample_contact_address | 377-2 Ohno-Higashi
| | Sample_contact_city | Osaka-Sayama
| | Sample_contact_zip/postal_code | 589-8511
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1038nnn/GSM1038743/suppl/GSM1038743_ID_28.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1038nnn/GSM1038743/suppl/GSM1038743_ID_28.CHP.gz
| | Sample_series_id | GSE42392
| | Sample_data_row_count | 54675
| | |
|
GSM1038744 | GPL570 |
|
CUP patient 29
|
metastatic lesion
|
tissue: lymph node
disease state: cancer of unknown primary
|
|
| Sample_geo_accession | GSM1038744
| | Sample_status | Public on Nov 20 2012
| | Sample_submission_date | Nov 19 2012
| | Sample_last_update_date | Nov 20 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The mRNA extraction was done using the Isogen protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNAs were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | IVT products were magnetic-bead purified, frangmented, and hybridized onto Affymetrix U133 plus 2.0 GeneChip at 45° C for 16 h.
| | Sample_scan_protocol | Scanner in an Affymetrix GeneChip Scanner 3000 7G (Santa Clara, CA).
| | Sample_data_processing | Data extraction was done by the Affymetrix GCOS software v1.4.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yoshihiko,,Fujita
| | Sample_contact_email | fujita@med.kindai.ac.jp
| | Sample_contact_institute | Kinki university School of Medicine
| | Sample_contact_address | 377-2 Ohno-Higashi
| | Sample_contact_city | Osaka-Sayama
| | Sample_contact_zip/postal_code | 589-8511
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1038nnn/GSM1038744/suppl/GSM1038744_ID_29.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1038nnn/GSM1038744/suppl/GSM1038744_ID_29.CHP.gz
| | Sample_series_id | GSE42392
| | Sample_data_row_count | 54675
| | |
|
GSM1038745 | GPL570 |
|
CUP patient 30
|
metastatic lesion
|
tissue: ascites/hydrothorax
disease state: cancer of unknown primary
|
|
| Sample_geo_accession | GSM1038745
| | Sample_status | Public on Nov 20 2012
| | Sample_submission_date | Nov 19 2012
| | Sample_last_update_date | Nov 20 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The mRNA extraction was done using the Isogen protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNAs were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | IVT products were magnetic-bead purified, frangmented, and hybridized onto Affymetrix U133 plus 2.0 GeneChip at 45° C for 16 h.
| | Sample_scan_protocol | Scanner in an Affymetrix GeneChip Scanner 3000 7G (Santa Clara, CA).
| | Sample_data_processing | Data extraction was done by the Affymetrix GCOS software v1.4.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yoshihiko,,Fujita
| | Sample_contact_email | fujita@med.kindai.ac.jp
| | Sample_contact_institute | Kinki university School of Medicine
| | Sample_contact_address | 377-2 Ohno-Higashi
| | Sample_contact_city | Osaka-Sayama
| | Sample_contact_zip/postal_code | 589-8511
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1038nnn/GSM1038745/suppl/GSM1038745_ID_30.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1038nnn/GSM1038745/suppl/GSM1038745_ID_30.CHP.gz
| | Sample_series_id | GSE42392
| | Sample_data_row_count | 54675
| | |
|
GSM1038746 | GPL570 |
|
CUP patient 31
|
metastatic lesion
|
tissue: lymph node
disease state: cancer of unknown primary
|
|
| Sample_geo_accession | GSM1038746
| | Sample_status | Public on Nov 20 2012
| | Sample_submission_date | Nov 19 2012
| | Sample_last_update_date | Nov 20 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The mRNA extraction was done using the Isogen protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNAs were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | IVT products were magnetic-bead purified, frangmented, and hybridized onto Affymetrix U133 plus 2.0 GeneChip at 45° C for 16 h.
| | Sample_scan_protocol | Scanner in an Affymetrix GeneChip Scanner 3000 7G (Santa Clara, CA).
| | Sample_data_processing | Data extraction was done by the Affymetrix GCOS software v1.4.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yoshihiko,,Fujita
| | Sample_contact_email | fujita@med.kindai.ac.jp
| | Sample_contact_institute | Kinki university School of Medicine
| | Sample_contact_address | 377-2 Ohno-Higashi
| | Sample_contact_city | Osaka-Sayama
| | Sample_contact_zip/postal_code | 589-8511
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1038nnn/GSM1038746/suppl/GSM1038746_ID_31.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1038nnn/GSM1038746/suppl/GSM1038746_ID_31.CHP.gz
| | Sample_series_id | GSE42392
| | Sample_data_row_count | 54675
| | |
|
GSM1038747 | GPL570 |
|
CUP patient 32
|
metastatic lesion
|
tissue: lymph node
disease state: cancer of unknown primary
|
|
| Sample_geo_accession | GSM1038747
| | Sample_status | Public on Nov 20 2012
| | Sample_submission_date | Nov 19 2012
| | Sample_last_update_date | Nov 20 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The mRNA extraction was done using the Isogen protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNAs were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | IVT products were magnetic-bead purified, frangmented, and hybridized onto Affymetrix U133 plus 2.0 GeneChip at 45° C for 16 h.
| | Sample_scan_protocol | Scanner in an Affymetrix GeneChip Scanner 3000 7G (Santa Clara, CA).
| | Sample_data_processing | Data extraction was done by the Affymetrix GCOS software v1.4.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yoshihiko,,Fujita
| | Sample_contact_email | fujita@med.kindai.ac.jp
| | Sample_contact_institute | Kinki university School of Medicine
| | Sample_contact_address | 377-2 Ohno-Higashi
| | Sample_contact_city | Osaka-Sayama
| | Sample_contact_zip/postal_code | 589-8511
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1038nnn/GSM1038747/suppl/GSM1038747_ID_32.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1038nnn/GSM1038747/suppl/GSM1038747_ID_32.CHP.gz
| | Sample_series_id | GSE42392
| | Sample_data_row_count | 54675
| | |
|
GSM1038748 | GPL570 |
|
CUP patient 33
|
metastatic lesion
|
tissue: lymph node
disease state: cancer of unknown primary
|
|
| Sample_geo_accession | GSM1038748
| | Sample_status | Public on Nov 20 2012
| | Sample_submission_date | Nov 19 2012
| | Sample_last_update_date | Nov 20 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The mRNA extraction was done using the Isogen protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNAs were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | IVT products were magnetic-bead purified, frangmented, and hybridized onto Affymetrix U133 plus 2.0 GeneChip at 45° C for 16 h.
| | Sample_scan_protocol | Scanner in an Affymetrix GeneChip Scanner 3000 7G (Santa Clara, CA).
| | Sample_data_processing | Data extraction was done by the Affymetrix GCOS software v1.4.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yoshihiko,,Fujita
| | Sample_contact_email | fujita@med.kindai.ac.jp
| | Sample_contact_institute | Kinki university School of Medicine
| | Sample_contact_address | 377-2 Ohno-Higashi
| | Sample_contact_city | Osaka-Sayama
| | Sample_contact_zip/postal_code | 589-8511
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1038nnn/GSM1038748/suppl/GSM1038748_ID_33.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1038nnn/GSM1038748/suppl/GSM1038748_ID_33.CHP.gz
| | Sample_series_id | GSE42392
| | Sample_data_row_count | 54675
| | |
|
GSM1038749 | GPL570 |
|
CUP patient 34
|
metastatic lesion
|
tissue: lymph node
disease state: cancer of unknown primary
|
|
| Sample_geo_accession | GSM1038749
| | Sample_status | Public on Nov 20 2012
| | Sample_submission_date | Nov 19 2012
| | Sample_last_update_date | Nov 20 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The mRNA extraction was done using the Isogen protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNAs were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | IVT products were magnetic-bead purified, frangmented, and hybridized onto Affymetrix U133 plus 2.0 GeneChip at 45° C for 16 h.
| | Sample_scan_protocol | Scanner in an Affymetrix GeneChip Scanner 3000 7G (Santa Clara, CA).
| | Sample_data_processing | Data extraction was done by the Affymetrix GCOS software v1.4.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yoshihiko,,Fujita
| | Sample_contact_email | fujita@med.kindai.ac.jp
| | Sample_contact_institute | Kinki university School of Medicine
| | Sample_contact_address | 377-2 Ohno-Higashi
| | Sample_contact_city | Osaka-Sayama
| | Sample_contact_zip/postal_code | 589-8511
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1038nnn/GSM1038749/suppl/GSM1038749_ID_34.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1038nnn/GSM1038749/suppl/GSM1038749_ID_34.CHP.gz
| | Sample_series_id | GSE42392
| | Sample_data_row_count | 54675
| | |
|
GSM1038750 | GPL570 |
|
CUP patient 35
|
metastatic lesion
|
tissue: lymph node
disease state: cancer of unknown primary
|
|
| Sample_geo_accession | GSM1038750
| | Sample_status | Public on Nov 20 2012
| | Sample_submission_date | Nov 19 2012
| | Sample_last_update_date | Nov 20 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The mRNA extraction was done using the Isogen protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNAs were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | IVT products were magnetic-bead purified, frangmented, and hybridized onto Affymetrix U133 plus 2.0 GeneChip at 45° C for 16 h.
| | Sample_scan_protocol | Scanner in an Affymetrix GeneChip Scanner 3000 7G (Santa Clara, CA).
| | Sample_data_processing | Data extraction was done by the Affymetrix GCOS software v1.4.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yoshihiko,,Fujita
| | Sample_contact_email | fujita@med.kindai.ac.jp
| | Sample_contact_institute | Kinki university School of Medicine
| | Sample_contact_address | 377-2 Ohno-Higashi
| | Sample_contact_city | Osaka-Sayama
| | Sample_contact_zip/postal_code | 589-8511
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1038nnn/GSM1038750/suppl/GSM1038750_ID_35.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1038nnn/GSM1038750/suppl/GSM1038750_ID_35.CHP.gz
| | Sample_series_id | GSE42392
| | Sample_data_row_count | 54675
| | |
|
GSM1038751 | GPL570 |
|
CUP patient 36
|
metastatic lesion
|
tissue: lymph node
disease state: cancer of unknown primary
|
|
| Sample_geo_accession | GSM1038751
| | Sample_status | Public on Nov 20 2012
| | Sample_submission_date | Nov 19 2012
| | Sample_last_update_date | Nov 20 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The mRNA extraction was done using the Isogen protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNAs were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | IVT products were magnetic-bead purified, frangmented, and hybridized onto Affymetrix U133 plus 2.0 GeneChip at 45° C for 16 h.
| | Sample_scan_protocol | Scanner in an Affymetrix GeneChip Scanner 3000 7G (Santa Clara, CA).
| | Sample_data_processing | Data extraction was done by the Affymetrix GCOS software v1.4.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yoshihiko,,Fujita
| | Sample_contact_email | fujita@med.kindai.ac.jp
| | Sample_contact_institute | Kinki university School of Medicine
| | Sample_contact_address | 377-2 Ohno-Higashi
| | Sample_contact_city | Osaka-Sayama
| | Sample_contact_zip/postal_code | 589-8511
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1038nnn/GSM1038751/suppl/GSM1038751_ID_36.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1038nnn/GSM1038751/suppl/GSM1038751_ID_36.CHP.gz
| | Sample_series_id | GSE42392
| | Sample_data_row_count | 54675
| | |
|
GSM1038752 | GPL570 |
|
CUP patient 37
|
metastatic lesion
|
tissue: lymph node
disease state: cancer of unknown primary
|
|
| Sample_geo_accession | GSM1038752
| | Sample_status | Public on Nov 20 2012
| | Sample_submission_date | Nov 19 2012
| | Sample_last_update_date | Nov 20 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The mRNA extraction was done using the Isogen protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNAs were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | IVT products were magnetic-bead purified, frangmented, and hybridized onto Affymetrix U133 plus 2.0 GeneChip at 45° C for 16 h.
| | Sample_scan_protocol | Scanner in an Affymetrix GeneChip Scanner 3000 7G (Santa Clara, CA).
| | Sample_data_processing | Data extraction was done by the Affymetrix GCOS software v1.4.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yoshihiko,,Fujita
| | Sample_contact_email | fujita@med.kindai.ac.jp
| | Sample_contact_institute | Kinki university School of Medicine
| | Sample_contact_address | 377-2 Ohno-Higashi
| | Sample_contact_city | Osaka-Sayama
| | Sample_contact_zip/postal_code | 589-8511
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1038nnn/GSM1038752/suppl/GSM1038752_ID_37.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1038nnn/GSM1038752/suppl/GSM1038752_ID_37.CHP.gz
| | Sample_series_id | GSE42392
| | Sample_data_row_count | 54675
| | |
|
GSM1038753 | GPL570 |
|
CUP patient 38
|
metastatic lesion
|
tissue: ascites/hydrothorax
disease state: cancer of unknown primary
|
|
| Sample_geo_accession | GSM1038753
| | Sample_status | Public on Nov 20 2012
| | Sample_submission_date | Nov 19 2012
| | Sample_last_update_date | Nov 20 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The mRNA extraction was done using the Isogen protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNAs were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | IVT products were magnetic-bead purified, frangmented, and hybridized onto Affymetrix U133 plus 2.0 GeneChip at 45° C for 16 h.
| | Sample_scan_protocol | Scanner in an Affymetrix GeneChip Scanner 3000 7G (Santa Clara, CA).
| | Sample_data_processing | Data extraction was done by the Affymetrix GCOS software v1.4.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yoshihiko,,Fujita
| | Sample_contact_email | fujita@med.kindai.ac.jp
| | Sample_contact_institute | Kinki university School of Medicine
| | Sample_contact_address | 377-2 Ohno-Higashi
| | Sample_contact_city | Osaka-Sayama
| | Sample_contact_zip/postal_code | 589-8511
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1038nnn/GSM1038753/suppl/GSM1038753_ID_38.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1038nnn/GSM1038753/suppl/GSM1038753_ID_38.CHP.gz
| | Sample_series_id | GSE42392
| | Sample_data_row_count | 54675
| | |
|
GSM1038754 | GPL570 |
|
CUP patient 39
|
metastatic lesion
|
tissue: lymph node
disease state: cancer of unknown primary
|
|
| Sample_geo_accession | GSM1038754
| | Sample_status | Public on Nov 20 2012
| | Sample_submission_date | Nov 19 2012
| | Sample_last_update_date | Nov 20 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The mRNA extraction was done using the Isogen protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNAs were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | IVT products were magnetic-bead purified, frangmented, and hybridized onto Affymetrix U133 plus 2.0 GeneChip at 45° C for 16 h.
| | Sample_scan_protocol | Scanner in an Affymetrix GeneChip Scanner 3000 7G (Santa Clara, CA).
| | Sample_data_processing | Data extraction was done by the Affymetrix GCOS software v1.4.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yoshihiko,,Fujita
| | Sample_contact_email | fujita@med.kindai.ac.jp
| | Sample_contact_institute | Kinki university School of Medicine
| | Sample_contact_address | 377-2 Ohno-Higashi
| | Sample_contact_city | Osaka-Sayama
| | Sample_contact_zip/postal_code | 589-8511
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1038nnn/GSM1038754/suppl/GSM1038754_ID_39.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1038nnn/GSM1038754/suppl/GSM1038754_ID_39.CHP.gz
| | Sample_series_id | GSE42392
| | Sample_data_row_count | 54675
| | |
|
GSM1038755 | GPL570 |
|
CUP patient 40
|
metastatic lesion
|
tissue: lymph node
disease state: cancer of unknown primary
|
|
| Sample_geo_accession | GSM1038755
| | Sample_status | Public on Nov 20 2012
| | Sample_submission_date | Nov 19 2012
| | Sample_last_update_date | Nov 20 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The mRNA extraction was done using the Isogen protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNAs were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | IVT products were magnetic-bead purified, frangmented, and hybridized onto Affymetrix U133 plus 2.0 GeneChip at 45° C for 16 h.
| | Sample_scan_protocol | Scanner in an Affymetrix GeneChip Scanner 3000 7G (Santa Clara, CA).
| | Sample_data_processing | Data extraction was done by the Affymetrix GCOS software v1.4.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yoshihiko,,Fujita
| | Sample_contact_email | fujita@med.kindai.ac.jp
| | Sample_contact_institute | Kinki university School of Medicine
| | Sample_contact_address | 377-2 Ohno-Higashi
| | Sample_contact_city | Osaka-Sayama
| | Sample_contact_zip/postal_code | 589-8511
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1038nnn/GSM1038755/suppl/GSM1038755_ID_40.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1038nnn/GSM1038755/suppl/GSM1038755_ID_40.CHP.gz
| | Sample_series_id | GSE42392
| | Sample_data_row_count | 54675
| | |
|
GSM1038756 | GPL570 |
|
CUP patient 41
|
metastatic lesion
|
tissue: lymph node
disease state: cancer of unknown primary
|
|
| Sample_geo_accession | GSM1038756
| | Sample_status | Public on Nov 20 2012
| | Sample_submission_date | Nov 19 2012
| | Sample_last_update_date | Nov 20 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The mRNA extraction was done using the Isogen protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNAs were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | IVT products were magnetic-bead purified, frangmented, and hybridized onto Affymetrix U133 plus 2.0 GeneChip at 45° C for 16 h.
| | Sample_scan_protocol | Scanner in an Affymetrix GeneChip Scanner 3000 7G (Santa Clara, CA).
| | Sample_data_processing | Data extraction was done by the Affymetrix GCOS software v1.4.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yoshihiko,,Fujita
| | Sample_contact_email | fujita@med.kindai.ac.jp
| | Sample_contact_institute | Kinki university School of Medicine
| | Sample_contact_address | 377-2 Ohno-Higashi
| | Sample_contact_city | Osaka-Sayama
| | Sample_contact_zip/postal_code | 589-8511
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1038nnn/GSM1038756/suppl/GSM1038756_ID_41.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1038nnn/GSM1038756/suppl/GSM1038756_ID_41.CHP.gz
| | Sample_series_id | GSE42392
| | Sample_data_row_count | 54675
| | |
|
GSM1038757 | GPL570 |
|
CUP patient 42
|
metastatic lesion
|
tissue: lymph node
disease state: cancer of unknown primary
|
|
| Sample_geo_accession | GSM1038757
| | Sample_status | Public on Nov 20 2012
| | Sample_submission_date | Nov 19 2012
| | Sample_last_update_date | Nov 20 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The mRNA extraction was done using the Isogen protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNAs were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | IVT products were magnetic-bead purified, frangmented, and hybridized onto Affymetrix U133 plus 2.0 GeneChip at 45° C for 16 h.
| | Sample_scan_protocol | Scanner in an Affymetrix GeneChip Scanner 3000 7G (Santa Clara, CA).
| | Sample_data_processing | Data extraction was done by the Affymetrix GCOS software v1.4.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yoshihiko,,Fujita
| | Sample_contact_email | fujita@med.kindai.ac.jp
| | Sample_contact_institute | Kinki university School of Medicine
| | Sample_contact_address | 377-2 Ohno-Higashi
| | Sample_contact_city | Osaka-Sayama
| | Sample_contact_zip/postal_code | 589-8511
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1038nnn/GSM1038757/suppl/GSM1038757_ID_42.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1038nnn/GSM1038757/suppl/GSM1038757_ID_42.CHP.gz
| | Sample_series_id | GSE42392
| | Sample_data_row_count | 54675
| | |
|
GSM1038758 | GPL570 |
|
CUP patient 43
|
metastatic lesion
|
tissue: lymph node
disease state: cancer of unknown primary
|
|
| Sample_geo_accession | GSM1038758
| | Sample_status | Public on Nov 20 2012
| | Sample_submission_date | Nov 19 2012
| | Sample_last_update_date | Nov 20 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The mRNA extraction was done using the Isogen protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNAs were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | IVT products were magnetic-bead purified, frangmented, and hybridized onto Affymetrix U133 plus 2.0 GeneChip at 45° C for 16 h.
| | Sample_scan_protocol | Scanner in an Affymetrix GeneChip Scanner 3000 7G (Santa Clara, CA).
| | Sample_data_processing | Data extraction was done by the Affymetrix GCOS software v1.4.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yoshihiko,,Fujita
| | Sample_contact_email | fujita@med.kindai.ac.jp
| | Sample_contact_institute | Kinki university School of Medicine
| | Sample_contact_address | 377-2 Ohno-Higashi
| | Sample_contact_city | Osaka-Sayama
| | Sample_contact_zip/postal_code | 589-8511
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1038nnn/GSM1038758/suppl/GSM1038758_ID_43.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1038nnn/GSM1038758/suppl/GSM1038758_ID_43.CHP.gz
| | Sample_series_id | GSE42392
| | Sample_data_row_count | 54675
| | |
|
GSM1038759 | GPL570 |
|
CUP patient 44
|
metastatic lesion
|
tissue: lymph node
disease state: cancer of unknown primary
|
|
| Sample_geo_accession | GSM1038759
| | Sample_status | Public on Nov 20 2012
| | Sample_submission_date | Nov 19 2012
| | Sample_last_update_date | Nov 20 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The mRNA extraction was done using the Isogen protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNAs were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | IVT products were magnetic-bead purified, frangmented, and hybridized onto Affymetrix U133 plus 2.0 GeneChip at 45° C for 16 h.
| | Sample_scan_protocol | Scanner in an Affymetrix GeneChip Scanner 3000 7G (Santa Clara, CA).
| | Sample_data_processing | Data extraction was done by the Affymetrix GCOS software v1.4.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yoshihiko,,Fujita
| | Sample_contact_email | fujita@med.kindai.ac.jp
| | Sample_contact_institute | Kinki university School of Medicine
| | Sample_contact_address | 377-2 Ohno-Higashi
| | Sample_contact_city | Osaka-Sayama
| | Sample_contact_zip/postal_code | 589-8511
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1038nnn/GSM1038759/suppl/GSM1038759_ID_44.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1038nnn/GSM1038759/suppl/GSM1038759_ID_44.CHP.gz
| | Sample_series_id | GSE42392
| | Sample_data_row_count | 54675
| | |
|
GSM1038760 | GPL570 |
|
CUP patient 45
|
metastatic lesion
|
tissue: lymph node
disease state: cancer of unknown primary
|
|
| Sample_geo_accession | GSM1038760
| | Sample_status | Public on Nov 20 2012
| | Sample_submission_date | Nov 19 2012
| | Sample_last_update_date | Nov 20 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The mRNA extraction was done using the Isogen protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNAs were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | IVT products were magnetic-bead purified, frangmented, and hybridized onto Affymetrix U133 plus 2.0 GeneChip at 45° C for 16 h.
| | Sample_scan_protocol | Scanner in an Affymetrix GeneChip Scanner 3000 7G (Santa Clara, CA).
| | Sample_data_processing | Data extraction was done by the Affymetrix GCOS software v1.4.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yoshihiko,,Fujita
| | Sample_contact_email | fujita@med.kindai.ac.jp
| | Sample_contact_institute | Kinki university School of Medicine
| | Sample_contact_address | 377-2 Ohno-Higashi
| | Sample_contact_city | Osaka-Sayama
| | Sample_contact_zip/postal_code | 589-8511
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1038nnn/GSM1038760/suppl/GSM1038760_ID_45.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1038nnn/GSM1038760/suppl/GSM1038760_ID_45.CHP.gz
| | Sample_series_id | GSE42392
| | Sample_data_row_count | 54675
| | |
|
GSM1038761 | GPL570 |
|
CUP patient 46
|
metastatic lesion
|
tissue: lymph node
disease state: cancer of unknown primary
|
|
| Sample_geo_accession | GSM1038761
| | Sample_status | Public on Nov 20 2012
| | Sample_submission_date | Nov 19 2012
| | Sample_last_update_date | Nov 20 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The mRNA extraction was done using the Isogen protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNAs were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | IVT products were magnetic-bead purified, frangmented, and hybridized onto Affymetrix U133 plus 2.0 GeneChip at 45° C for 16 h.
| | Sample_scan_protocol | Scanner in an Affymetrix GeneChip Scanner 3000 7G (Santa Clara, CA).
| | Sample_data_processing | Data extraction was done by the Affymetrix GCOS software v1.4.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yoshihiko,,Fujita
| | Sample_contact_email | fujita@med.kindai.ac.jp
| | Sample_contact_institute | Kinki university School of Medicine
| | Sample_contact_address | 377-2 Ohno-Higashi
| | Sample_contact_city | Osaka-Sayama
| | Sample_contact_zip/postal_code | 589-8511
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1038nnn/GSM1038761/suppl/GSM1038761_ID_46.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1038nnn/GSM1038761/suppl/GSM1038761_ID_46.CHP.gz
| | Sample_series_id | GSE42392
| | Sample_data_row_count | 54675
| | |
|
GSM1038762 | GPL570 |
|
CUP patient 47
|
metastatic lesion
|
tissue: lymph node
disease state: cancer of unknown primary
|
|
| Sample_geo_accession | GSM1038762
| | Sample_status | Public on Nov 20 2012
| | Sample_submission_date | Nov 19 2012
| | Sample_last_update_date | Nov 20 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The mRNA extraction was done using the Isogen protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNAs were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | IVT products were magnetic-bead purified, frangmented, and hybridized onto Affymetrix U133 plus 2.0 GeneChip at 45° C for 16 h.
| | Sample_scan_protocol | Scanner in an Affymetrix GeneChip Scanner 3000 7G (Santa Clara, CA).
| | Sample_data_processing | Data extraction was done by the Affymetrix GCOS software v1.4.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yoshihiko,,Fujita
| | Sample_contact_email | fujita@med.kindai.ac.jp
| | Sample_contact_institute | Kinki university School of Medicine
| | Sample_contact_address | 377-2 Ohno-Higashi
| | Sample_contact_city | Osaka-Sayama
| | Sample_contact_zip/postal_code | 589-8511
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1038nnn/GSM1038762/suppl/GSM1038762_ID_47.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1038nnn/GSM1038762/suppl/GSM1038762_ID_47.CHP.gz
| | Sample_series_id | GSE42392
| | Sample_data_row_count | 54675
| | |
|
GSM1038763 | GPL570 |
|
CUP patient 48
|
metastatic lesion
|
tissue: lymph node
disease state: cancer of unknown primary
|
|
| Sample_geo_accession | GSM1038763
| | Sample_status | Public on Nov 20 2012
| | Sample_submission_date | Nov 19 2012
| | Sample_last_update_date | Nov 20 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The mRNA extraction was done using the Isogen protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNAs were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | IVT products were magnetic-bead purified, frangmented, and hybridized onto Affymetrix U133 plus 2.0 GeneChip at 45° C for 16 h.
| | Sample_scan_protocol | Scanner in an Affymetrix GeneChip Scanner 3000 7G (Santa Clara, CA).
| | Sample_data_processing | Data extraction was done by the Affymetrix GCOS software v1.4.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yoshihiko,,Fujita
| | Sample_contact_email | fujita@med.kindai.ac.jp
| | Sample_contact_institute | Kinki university School of Medicine
| | Sample_contact_address | 377-2 Ohno-Higashi
| | Sample_contact_city | Osaka-Sayama
| | Sample_contact_zip/postal_code | 589-8511
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1038nnn/GSM1038763/suppl/GSM1038763_ID_48.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1038nnn/GSM1038763/suppl/GSM1038763_ID_48.CHP.gz
| | Sample_series_id | GSE42392
| | Sample_data_row_count | 54675
| | |
|
GSM1038764 | GPL570 |
|
CUP patient 49
|
metastatic lesion
|
tissue: lymph node
disease state: cancer of unknown primary
|
|
| Sample_geo_accession | GSM1038764
| | Sample_status | Public on Nov 20 2012
| | Sample_submission_date | Nov 19 2012
| | Sample_last_update_date | Nov 20 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The mRNA extraction was done using the Isogen protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNAs were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | IVT products were magnetic-bead purified, frangmented, and hybridized onto Affymetrix U133 plus 2.0 GeneChip at 45° C for 16 h.
| | Sample_scan_protocol | Scanner in an Affymetrix GeneChip Scanner 3000 7G (Santa Clara, CA).
| | Sample_data_processing | Data extraction was done by the Affymetrix GCOS software v1.4.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yoshihiko,,Fujita
| | Sample_contact_email | fujita@med.kindai.ac.jp
| | Sample_contact_institute | Kinki university School of Medicine
| | Sample_contact_address | 377-2 Ohno-Higashi
| | Sample_contact_city | Osaka-Sayama
| | Sample_contact_zip/postal_code | 589-8511
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1038nnn/GSM1038764/suppl/GSM1038764_ID_49.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1038nnn/GSM1038764/suppl/GSM1038764_ID_49.CHP.gz
| | Sample_series_id | GSE42392
| | Sample_data_row_count | 54675
| | |
|
GSM1038765 | GPL570 |
|
CUP patient 50
|
metastatic lesion
|
tissue: lymph node
disease state: cancer of unknown primary
|
|
| Sample_geo_accession | GSM1038765
| | Sample_status | Public on Nov 20 2012
| | Sample_submission_date | Nov 19 2012
| | Sample_last_update_date | Nov 20 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The mRNA extraction was done using the Isogen protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNAs were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | IVT products were magnetic-bead purified, frangmented, and hybridized onto Affymetrix U133 plus 2.0 GeneChip at 45° C for 16 h.
| | Sample_scan_protocol | Scanner in an Affymetrix GeneChip Scanner 3000 7G (Santa Clara, CA).
| | Sample_data_processing | Data extraction was done by the Affymetrix GCOS software v1.4.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yoshihiko,,Fujita
| | Sample_contact_email | fujita@med.kindai.ac.jp
| | Sample_contact_institute | Kinki university School of Medicine
| | Sample_contact_address | 377-2 Ohno-Higashi
| | Sample_contact_city | Osaka-Sayama
| | Sample_contact_zip/postal_code | 589-8511
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1038nnn/GSM1038765/suppl/GSM1038765_ID_50.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1038nnn/GSM1038765/suppl/GSM1038765_ID_50.CHP.gz
| | Sample_series_id | GSE42392
| | Sample_data_row_count | 54675
| | |
|
GSM1038766 | GPL570 |
|
CUP patient 51
|
metastatic lesion
|
tissue: lymph node
disease state: cancer of unknown primary
|
|
| Sample_geo_accession | GSM1038766
| | Sample_status | Public on Nov 20 2012
| | Sample_submission_date | Nov 19 2012
| | Sample_last_update_date | Nov 20 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The mRNA extraction was done using the Isogen protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNAs were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | IVT products were magnetic-bead purified, frangmented, and hybridized onto Affymetrix U133 plus 2.0 GeneChip at 45° C for 16 h.
| | Sample_scan_protocol | Scanner in an Affymetrix GeneChip Scanner 3000 7G (Santa Clara, CA).
| | Sample_data_processing | Data extraction was done by the Affymetrix GCOS software v1.4.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yoshihiko,,Fujita
| | Sample_contact_email | fujita@med.kindai.ac.jp
| | Sample_contact_institute | Kinki university School of Medicine
| | Sample_contact_address | 377-2 Ohno-Higashi
| | Sample_contact_city | Osaka-Sayama
| | Sample_contact_zip/postal_code | 589-8511
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1038nnn/GSM1038766/suppl/GSM1038766_ID_51.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1038nnn/GSM1038766/suppl/GSM1038766_ID_51.CHP.gz
| | Sample_series_id | GSE42392
| | Sample_data_row_count | 54675
| | |
|
GSM1038767 | GPL570 |
|
CUP patient 52
|
metastatic lesion
|
tissue: lymph node
disease state: cancer of unknown primary
|
|
| Sample_geo_accession | GSM1038767
| | Sample_status | Public on Nov 20 2012
| | Sample_submission_date | Nov 19 2012
| | Sample_last_update_date | Nov 20 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The mRNA extraction was done using the Isogen protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNAs were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | IVT products were magnetic-bead purified, frangmented, and hybridized onto Affymetrix U133 plus 2.0 GeneChip at 45° C for 16 h.
| | Sample_scan_protocol | Scanner in an Affymetrix GeneChip Scanner 3000 7G (Santa Clara, CA).
| | Sample_data_processing | Data extraction was done by the Affymetrix GCOS software v1.4.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yoshihiko,,Fujita
| | Sample_contact_email | fujita@med.kindai.ac.jp
| | Sample_contact_institute | Kinki university School of Medicine
| | Sample_contact_address | 377-2 Ohno-Higashi
| | Sample_contact_city | Osaka-Sayama
| | Sample_contact_zip/postal_code | 589-8511
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1038nnn/GSM1038767/suppl/GSM1038767_ID_52.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1038nnn/GSM1038767/suppl/GSM1038767_ID_52.CHP.gz
| | Sample_series_id | GSE42392
| | Sample_data_row_count | 54675
| | |
|
GSM1038768 | GPL570 |
|
CUP patient 53
|
metastatic lesion
|
tissue: lymph node
disease state: cancer of unknown primary
|
|
| Sample_geo_accession | GSM1038768
| | Sample_status | Public on Nov 20 2012
| | Sample_submission_date | Nov 19 2012
| | Sample_last_update_date | Nov 20 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The mRNA extraction was done using the Isogen protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNAs were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | IVT products were magnetic-bead purified, frangmented, and hybridized onto Affymetrix U133 plus 2.0 GeneChip at 45° C for 16 h.
| | Sample_scan_protocol | Scanner in an Affymetrix GeneChip Scanner 3000 7G (Santa Clara, CA).
| | Sample_data_processing | Data extraction was done by the Affymetrix GCOS software v1.4.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yoshihiko,,Fujita
| | Sample_contact_email | fujita@med.kindai.ac.jp
| | Sample_contact_institute | Kinki university School of Medicine
| | Sample_contact_address | 377-2 Ohno-Higashi
| | Sample_contact_city | Osaka-Sayama
| | Sample_contact_zip/postal_code | 589-8511
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1038nnn/GSM1038768/suppl/GSM1038768_ID_53.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1038nnn/GSM1038768/suppl/GSM1038768_ID_53.CHP.gz
| | Sample_series_id | GSE42392
| | Sample_data_row_count | 54675
| | |
|
GSM1038769 | GPL570 |
|
CUP patient 54
|
metastatic lesion
|
tissue: lymph node
disease state: cancer of unknown primary
|
|
| Sample_geo_accession | GSM1038769
| | Sample_status | Public on Nov 20 2012
| | Sample_submission_date | Nov 19 2012
| | Sample_last_update_date | Nov 20 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The mRNA extraction was done using the Isogen protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNAs were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | IVT products were magnetic-bead purified, frangmented, and hybridized onto Affymetrix U133 plus 2.0 GeneChip at 45° C for 16 h.
| | Sample_scan_protocol | Scanner in an Affymetrix GeneChip Scanner 3000 7G (Santa Clara, CA).
| | Sample_data_processing | Data extraction was done by the Affymetrix GCOS software v1.4.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yoshihiko,,Fujita
| | Sample_contact_email | fujita@med.kindai.ac.jp
| | Sample_contact_institute | Kinki university School of Medicine
| | Sample_contact_address | 377-2 Ohno-Higashi
| | Sample_contact_city | Osaka-Sayama
| | Sample_contact_zip/postal_code | 589-8511
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1038nnn/GSM1038769/suppl/GSM1038769_ID_54.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1038nnn/GSM1038769/suppl/GSM1038769_ID_54.CHP.gz
| | Sample_series_id | GSE42392
| | Sample_data_row_count | 54675
| | |
|
GSM1038770 | GPL570 |
|
CUP patient 55
|
metastatic lesion
|
tissue: lymph node
disease state: cancer of unknown primary
|
|
| Sample_geo_accession | GSM1038770
| | Sample_status | Public on Nov 20 2012
| | Sample_submission_date | Nov 19 2012
| | Sample_last_update_date | Nov 20 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The mRNA extraction was done using the Isogen protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNAs were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | IVT products were magnetic-bead purified, frangmented, and hybridized onto Affymetrix U133 plus 2.0 GeneChip at 45° C for 16 h.
| | Sample_scan_protocol | Scanner in an Affymetrix GeneChip Scanner 3000 7G (Santa Clara, CA).
| | Sample_data_processing | Data extraction was done by the Affymetrix GCOS software v1.4.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yoshihiko,,Fujita
| | Sample_contact_email | fujita@med.kindai.ac.jp
| | Sample_contact_institute | Kinki university School of Medicine
| | Sample_contact_address | 377-2 Ohno-Higashi
| | Sample_contact_city | Osaka-Sayama
| | Sample_contact_zip/postal_code | 589-8511
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1038nnn/GSM1038770/suppl/GSM1038770_ID_55.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1038nnn/GSM1038770/suppl/GSM1038770_ID_55.CHP.gz
| | Sample_series_id | GSE42392
| | Sample_data_row_count | 54675
| | |
|
GSM1038771 | GPL570 |
|
CUP patient 56
|
metastatic lesion
|
tissue: lymph node
disease state: cancer of unknown primary
|
|
| Sample_geo_accession | GSM1038771
| | Sample_status | Public on Nov 20 2012
| | Sample_submission_date | Nov 19 2012
| | Sample_last_update_date | Nov 20 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The mRNA extraction was done using the Isogen protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNAs were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | IVT products were magnetic-bead purified, frangmented, and hybridized onto Affymetrix U133 plus 2.0 GeneChip at 45° C for 16 h.
| | Sample_scan_protocol | Scanner in an Affymetrix GeneChip Scanner 3000 7G (Santa Clara, CA).
| | Sample_data_processing | Data extraction was done by the Affymetrix GCOS software v1.4.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yoshihiko,,Fujita
| | Sample_contact_email | fujita@med.kindai.ac.jp
| | Sample_contact_institute | Kinki university School of Medicine
| | Sample_contact_address | 377-2 Ohno-Higashi
| | Sample_contact_city | Osaka-Sayama
| | Sample_contact_zip/postal_code | 589-8511
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1038nnn/GSM1038771/suppl/GSM1038771_ID_56.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1038nnn/GSM1038771/suppl/GSM1038771_ID_56.CHP.gz
| | Sample_series_id | GSE42392
| | Sample_data_row_count | 54675
| | |
|
GSM1038772 | GPL570 |
|
CUP patient 57
|
metastatic lesion
|
tissue: lymph node
disease state: cancer of unknown primary
|
|
| Sample_geo_accession | GSM1038772
| | Sample_status | Public on Nov 20 2012
| | Sample_submission_date | Nov 19 2012
| | Sample_last_update_date | Nov 20 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The mRNA extraction was done using the Isogen protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNAs were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | IVT products were magnetic-bead purified, frangmented, and hybridized onto Affymetrix U133 plus 2.0 GeneChip at 45° C for 16 h.
| | Sample_scan_protocol | Scanner in an Affymetrix GeneChip Scanner 3000 7G (Santa Clara, CA).
| | Sample_data_processing | Data extraction was done by the Affymetrix GCOS software v1.4.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yoshihiko,,Fujita
| | Sample_contact_email | fujita@med.kindai.ac.jp
| | Sample_contact_institute | Kinki university School of Medicine
| | Sample_contact_address | 377-2 Ohno-Higashi
| | Sample_contact_city | Osaka-Sayama
| | Sample_contact_zip/postal_code | 589-8511
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1038nnn/GSM1038772/suppl/GSM1038772_ID_57.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1038nnn/GSM1038772/suppl/GSM1038772_ID_57.CHP.gz
| | Sample_series_id | GSE42392
| | Sample_data_row_count | 54675
| | |
|
GSM1038773 | GPL570 |
|
CUP patient 58
|
metastatic lesion
|
tissue: lymph node
disease state: cancer of unknown primary
|
|
| Sample_geo_accession | GSM1038773
| | Sample_status | Public on Nov 20 2012
| | Sample_submission_date | Nov 19 2012
| | Sample_last_update_date | Nov 20 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The mRNA extraction was done using the Isogen protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNAs were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | IVT products were magnetic-bead purified, frangmented, and hybridized onto Affymetrix U133 plus 2.0 GeneChip at 45° C for 16 h.
| | Sample_scan_protocol | Scanner in an Affymetrix GeneChip Scanner 3000 7G (Santa Clara, CA).
| | Sample_data_processing | Data extraction was done by the Affymetrix GCOS software v1.4.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yoshihiko,,Fujita
| | Sample_contact_email | fujita@med.kindai.ac.jp
| | Sample_contact_institute | Kinki university School of Medicine
| | Sample_contact_address | 377-2 Ohno-Higashi
| | Sample_contact_city | Osaka-Sayama
| | Sample_contact_zip/postal_code | 589-8511
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1038nnn/GSM1038773/suppl/GSM1038773_ID_58.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1038nnn/GSM1038773/suppl/GSM1038773_ID_58.CHP.gz
| | Sample_series_id | GSE42392
| | Sample_data_row_count | 54675
| | |
|
GSM1038774 | GPL570 |
|
CUP patient 59
|
metastatic lesion
|
tissue: lymph node
disease state: cancer of unknown primary
|
|
| Sample_geo_accession | GSM1038774
| | Sample_status | Public on Nov 20 2012
| | Sample_submission_date | Nov 19 2012
| | Sample_last_update_date | Nov 20 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The mRNA extraction was done using the Isogen protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNAs were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | IVT products were magnetic-bead purified, frangmented, and hybridized onto Affymetrix U133 plus 2.0 GeneChip at 45° C for 16 h.
| | Sample_scan_protocol | Scanner in an Affymetrix GeneChip Scanner 3000 7G (Santa Clara, CA).
| | Sample_data_processing | Data extraction was done by the Affymetrix GCOS software v1.4.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yoshihiko,,Fujita
| | Sample_contact_email | fujita@med.kindai.ac.jp
| | Sample_contact_institute | Kinki university School of Medicine
| | Sample_contact_address | 377-2 Ohno-Higashi
| | Sample_contact_city | Osaka-Sayama
| | Sample_contact_zip/postal_code | 589-8511
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1038nnn/GSM1038774/suppl/GSM1038774_ID_59.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1038nnn/GSM1038774/suppl/GSM1038774_ID_59.CHP.gz
| | Sample_series_id | GSE42392
| | Sample_data_row_count | 54675
| | |
|
GSM1038775 | GPL570 |
|
CUP patient 60
|
metastatic lesion
|
tissue: lymph node
disease state: cancer of unknown primary
|
|
| Sample_geo_accession | GSM1038775
| | Sample_status | Public on Nov 20 2012
| | Sample_submission_date | Nov 19 2012
| | Sample_last_update_date | Nov 20 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The mRNA extraction was done using the Isogen protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNAs were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | IVT products were magnetic-bead purified, frangmented, and hybridized onto Affymetrix U133 plus 2.0 GeneChip at 45° C for 16 h.
| | Sample_scan_protocol | Scanner in an Affymetrix GeneChip Scanner 3000 7G (Santa Clara, CA).
| | Sample_data_processing | Data extraction was done by the Affymetrix GCOS software v1.4.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yoshihiko,,Fujita
| | Sample_contact_email | fujita@med.kindai.ac.jp
| | Sample_contact_institute | Kinki university School of Medicine
| | Sample_contact_address | 377-2 Ohno-Higashi
| | Sample_contact_city | Osaka-Sayama
| | Sample_contact_zip/postal_code | 589-8511
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1038nnn/GSM1038775/suppl/GSM1038775_ID_60.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1038nnn/GSM1038775/suppl/GSM1038775_ID_60.CHP.gz
| | Sample_series_id | GSE42392
| | Sample_data_row_count | 54675
| | |
|
| |
| |
Make groups for comparisons |
(2 groups will be compared at a time) |
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| Select GSMs and click on "Add groups" |
Enter the group name here: |
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