Search results for the GEO ID: GSE42407  |
(Click on the check boxes provided under "Select for analysis", to initiate grouping) |
(Once the selection is made, click on "Add groups" in "Make groups for comparison", to make a group. Scroll down) |
|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM1039261 | GPL570 |
|
CL1-0 biological repeat 1
|
CL1-0
|
parental cell line: CL1
cell type: Lung adenocarcinoma
cell population: poorly invasive
|
Gene expression data from CL1-0
|
| Sample_geo_accession | GSM1039261
| | Sample_status | Public on Dec 11 2012
| | Sample_submission_date | Nov 20 2012
| | Sample_last_update_date | Dec 13 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were cultured in RPMI basal media supplemented with 10 % of fetal bovine serum and 1% penicillin/streptomycin.
| | Sample_growth_protocol_ch1 | Cells were cultured in 5% CO2 incubator at 37℃.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagene RNeasy mini kit extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 20 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix Human Genome U133 PLUS 2.0 . GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Michael,,Hsiao
| | Sample_contact_email | mhsiao@gate.sinica.edu.tw
| | Sample_contact_phone | 886-2-27898752
| | Sample_contact_laboratory | Michael Hsiao Lab
| | Sample_contact_department | Genomics Research Center
| | Sample_contact_institute | Academia Sinica
| | Sample_contact_address | 128 Academia Road, Section 2, Nankang, Taipei 115, Taiwan
| | Sample_contact_city | Taipei
| | Sample_contact_zip/postal_code | 115
| | Sample_contact_country | Taiwan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1039nnn/GSM1039261/suppl/GSM1039261_CL1-0_1.CEL.gz
| | Sample_series_id | GSE42407
| | Sample_data_row_count | 54675
| | |
|
GSM1039262 | GPL570 |
|
CL1-0 biological repeat 2
|
CL1-0
|
parental cell line: CL1
cell type: Lung adenocarcinoma
cell population: poorly invasive
|
Gene expression data from CL1-0
|
| Sample_geo_accession | GSM1039262
| | Sample_status | Public on Dec 11 2012
| | Sample_submission_date | Nov 20 2012
| | Sample_last_update_date | Dec 13 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were cultured in RPMI basal media supplemented with 10 % of fetal bovine serum and 1% penicillin/streptomycin.
| | Sample_growth_protocol_ch1 | Cells were cultured in 5% CO2 incubator at 37℃.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagene RNeasy mini kit extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 20 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix Human Genome U133 PLUS 2.0 . GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Michael,,Hsiao
| | Sample_contact_email | mhsiao@gate.sinica.edu.tw
| | Sample_contact_phone | 886-2-27898752
| | Sample_contact_laboratory | Michael Hsiao Lab
| | Sample_contact_department | Genomics Research Center
| | Sample_contact_institute | Academia Sinica
| | Sample_contact_address | 128 Academia Road, Section 2, Nankang, Taipei 115, Taiwan
| | Sample_contact_city | Taipei
| | Sample_contact_zip/postal_code | 115
| | Sample_contact_country | Taiwan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1039nnn/GSM1039262/suppl/GSM1039262_CL1-0_2.CEL.gz
| | Sample_series_id | GSE42407
| | Sample_data_row_count | 54675
| | |
|
GSM1039263 | GPL570 |
|
CL1-0 biological repeat 3
|
CL1-0
|
parental cell line: CL1
cell type: Lung adenocarcinoma
cell population: poorly invasive
|
Gene expression data from CL1-0
|
| Sample_geo_accession | GSM1039263
| | Sample_status | Public on Dec 11 2012
| | Sample_submission_date | Nov 20 2012
| | Sample_last_update_date | Dec 13 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were cultured in RPMI basal media supplemented with 10 % of fetal bovine serum and 1% penicillin/streptomycin.
| | Sample_growth_protocol_ch1 | Cells were cultured in 5% CO2 incubator at 37℃.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagene RNeasy mini kit extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 20 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix Human Genome U133 PLUS 2.0 . GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Michael,,Hsiao
| | Sample_contact_email | mhsiao@gate.sinica.edu.tw
| | Sample_contact_phone | 886-2-27898752
| | Sample_contact_laboratory | Michael Hsiao Lab
| | Sample_contact_department | Genomics Research Center
| | Sample_contact_institute | Academia Sinica
| | Sample_contact_address | 128 Academia Road, Section 2, Nankang, Taipei 115, Taiwan
| | Sample_contact_city | Taipei
| | Sample_contact_zip/postal_code | 115
| | Sample_contact_country | Taiwan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1039nnn/GSM1039263/suppl/GSM1039263_CL1-0_3.CEL.gz
| | Sample_series_id | GSE42407
| | Sample_data_row_count | 54675
| | |
|
GSM1039264 | GPL570 |
|
CL1-5 biological repeat 1
|
CL1-5
|
parental cell line: CL1
cell type: Lung adenocarcinoma
cell population: highly invasive
|
Gene expression data from CL1-5
|
| Sample_geo_accession | GSM1039264
| | Sample_status | Public on Dec 11 2012
| | Sample_submission_date | Nov 20 2012
| | Sample_last_update_date | Dec 13 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were cultured in RPMI basal media supplemented with 10 % of fetal bovine serum and 1% penicillin/streptomycin.
| | Sample_growth_protocol_ch1 | Cells were cultured in 5% CO2 incubator at 37℃.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagene RNeasy mini kit extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 20 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix Human Genome U133 PLUS 2.0 . GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Michael,,Hsiao
| | Sample_contact_email | mhsiao@gate.sinica.edu.tw
| | Sample_contact_phone | 886-2-27898752
| | Sample_contact_laboratory | Michael Hsiao Lab
| | Sample_contact_department | Genomics Research Center
| | Sample_contact_institute | Academia Sinica
| | Sample_contact_address | 128 Academia Road, Section 2, Nankang, Taipei 115, Taiwan
| | Sample_contact_city | Taipei
| | Sample_contact_zip/postal_code | 115
| | Sample_contact_country | Taiwan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1039nnn/GSM1039264/suppl/GSM1039264_CL1-5_1.CEL.gz
| | Sample_series_id | GSE42407
| | Sample_data_row_count | 54675
| | |
|
GSM1039265 | GPL570 |
|
CL1-5 biological repeat 2
|
CL1-5
|
parental cell line: CL1
cell type: Lung adenocarcinoma
cell population: highly invasive
|
Gene expression data from CL1-5
|
| Sample_geo_accession | GSM1039265
| | Sample_status | Public on Dec 11 2012
| | Sample_submission_date | Nov 20 2012
| | Sample_last_update_date | Dec 13 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were cultured in RPMI basal media supplemented with 10 % of fetal bovine serum and 1% penicillin/streptomycin.
| | Sample_growth_protocol_ch1 | Cells were cultured in 5% CO2 incubator at 37℃.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagene RNeasy mini kit extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 20 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix Human Genome U133 PLUS 2.0 . GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Michael,,Hsiao
| | Sample_contact_email | mhsiao@gate.sinica.edu.tw
| | Sample_contact_phone | 886-2-27898752
| | Sample_contact_laboratory | Michael Hsiao Lab
| | Sample_contact_department | Genomics Research Center
| | Sample_contact_institute | Academia Sinica
| | Sample_contact_address | 128 Academia Road, Section 2, Nankang, Taipei 115, Taiwan
| | Sample_contact_city | Taipei
| | Sample_contact_zip/postal_code | 115
| | Sample_contact_country | Taiwan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1039nnn/GSM1039265/suppl/GSM1039265_CL1-5_2.CEL.gz
| | Sample_series_id | GSE42407
| | Sample_data_row_count | 54675
| | |
|
GSM1039266 | GPL570 |
|
CL1-5 biological repeat 3
|
CL1-5
|
parental cell line: CL1
cell type: Lung adenocarcinoma
cell population: highly invasive
|
Gene expression data from CL1-5
|
| Sample_geo_accession | GSM1039266
| | Sample_status | Public on Dec 11 2012
| | Sample_submission_date | Nov 20 2012
| | Sample_last_update_date | Dec 13 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were cultured in RPMI basal media supplemented with 10 % of fetal bovine serum and 1% penicillin/streptomycin.
| | Sample_growth_protocol_ch1 | Cells were cultured in 5% CO2 incubator at 37℃.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagene RNeasy mini kit extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 20 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix Human Genome U133 PLUS 2.0 . GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Michael,,Hsiao
| | Sample_contact_email | mhsiao@gate.sinica.edu.tw
| | Sample_contact_phone | 886-2-27898752
| | Sample_contact_laboratory | Michael Hsiao Lab
| | Sample_contact_department | Genomics Research Center
| | Sample_contact_institute | Academia Sinica
| | Sample_contact_address | 128 Academia Road, Section 2, Nankang, Taipei 115, Taiwan
| | Sample_contact_city | Taipei
| | Sample_contact_zip/postal_code | 115
| | Sample_contact_country | Taiwan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1039nnn/GSM1039266/suppl/GSM1039266_CL1-5_3.CEL.gz
| | Sample_series_id | GSE42407
| | Sample_data_row_count | 54675
| | |
|
| |
| |
Make groups for comparisons |
(2 groups will be compared at a time) |
|
| Select GSMs and click on "Add groups" |
Enter the group name here: |
|
|
|
