Search results for the GEO ID: GSE42601  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM1045752 | GPL1261 |
|
Wild-type testes at P21, biological rep1
|
testes, wild-type
|
strain: mixed C57BL/6 and 129
genotype: wild-type
tissue: testes
age: P21
|
1312W
|
| Sample_geo_accession | GSM1045752
| | Sample_status | Public on Jun 01 2013
| | Sample_submission_date | Nov 28 2012
| | Sample_last_update_date | Jul 30 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Not applicable.
| | Sample_growth_protocol_ch1 | Testes were dissected from P21 mice.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse Genome 430 2.0 Arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | Affymetrix GeneChIP Scanner 3000.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Hsiang-Ying,,Chen
| | Sample_contact_institute | IBMS
| | Sample_contact_address | 128 Sec. 2, Academia Rd.
| | Sample_contact_city | Taipei
| | Sample_contact_zip/postal_code | 115
| | Sample_contact_country | Taiwan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1045nnn/GSM1045752/suppl/GSM1045752_1312W.CEL.gz
| | Sample_series_id | GSE42601
| | Sample_series_id | GSE42604
| | Sample_data_row_count | 45037
| | |
|
GSM1045753 | GPL1261 |
|
Mutant testes at P21, biological rep1
|
testes, Dazap1 mutant
|
strain: mixed C57BL/6 and 129
genotype: Dazap1 mutant
tissue: testes
age: P21
|
1313F
|
| Sample_geo_accession | GSM1045753
| | Sample_status | Public on Jun 01 2013
| | Sample_submission_date | Nov 28 2012
| | Sample_last_update_date | Jul 30 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Not applicable.
| | Sample_growth_protocol_ch1 | Testes were dissected from P21 mice.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse Genome 430 2.0 Arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | Affymetrix GeneChIP Scanner 3000.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Hsiang-Ying,,Chen
| | Sample_contact_institute | IBMS
| | Sample_contact_address | 128 Sec. 2, Academia Rd.
| | Sample_contact_city | Taipei
| | Sample_contact_zip/postal_code | 115
| | Sample_contact_country | Taiwan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1045nnn/GSM1045753/suppl/GSM1045753_1313F.CEL.gz
| | Sample_series_id | GSE42601
| | Sample_series_id | GSE42604
| | Sample_data_row_count | 45037
| | |
|
GSM1045754 | GPL1261 |
|
Wild-type testes at P21, biological rep2
|
testes, wild-type
|
strain: mixed C57BL/6 and 129
genotype: wild-type
tissue: testes
age: P21
|
1361W
|
| Sample_geo_accession | GSM1045754
| | Sample_status | Public on Jun 01 2013
| | Sample_submission_date | Nov 28 2012
| | Sample_last_update_date | Jul 30 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Not applicable.
| | Sample_growth_protocol_ch1 | Testes were dissected from P21 mice.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse Genome 430 2.0 Arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | Affymetrix GeneChIP Scanner 3000.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Hsiang-Ying,,Chen
| | Sample_contact_institute | IBMS
| | Sample_contact_address | 128 Sec. 2, Academia Rd.
| | Sample_contact_city | Taipei
| | Sample_contact_zip/postal_code | 115
| | Sample_contact_country | Taiwan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1045nnn/GSM1045754/suppl/GSM1045754_1361W.CEL.gz
| | Sample_series_id | GSE42601
| | Sample_series_id | GSE42604
| | Sample_data_row_count | 45037
| | |
|
GSM1045755 | GPL1261 |
|
Mutant testes at P21, biological rep2
|
testes, Dazap1 mutant
|
strain: mixed C57BL/6 and 129
genotype: Dazap1 mutant
tissue: testes
age: P21
|
1362F
|
| Sample_geo_accession | GSM1045755
| | Sample_status | Public on Jun 01 2013
| | Sample_submission_date | Nov 28 2012
| | Sample_last_update_date | Jul 30 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Not applicable.
| | Sample_growth_protocol_ch1 | Testes were dissected from P21 mice.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse Genome 430 2.0 Arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | Affymetrix GeneChIP Scanner 3000.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Hsiang-Ying,,Chen
| | Sample_contact_institute | IBMS
| | Sample_contact_address | 128 Sec. 2, Academia Rd.
| | Sample_contact_city | Taipei
| | Sample_contact_zip/postal_code | 115
| | Sample_contact_country | Taiwan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1045nnn/GSM1045755/suppl/GSM1045755_1362F.CEL.gz
| | Sample_series_id | GSE42601
| | Sample_series_id | GSE42604
| | Sample_data_row_count | 45037
| | |
|
GSM1045756 | GPL1261 |
|
Wild-type testes at P21, biological rep3
|
testes, wild-type
|
strain: mixed C57BL/6 and 129
genotype: wild-type
tissue: testes
age: P21
|
1363W
|
| Sample_geo_accession | GSM1045756
| | Sample_status | Public on Jun 01 2013
| | Sample_submission_date | Nov 28 2012
| | Sample_last_update_date | Jul 30 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Not applicable.
| | Sample_growth_protocol_ch1 | Testes were dissected from P21 mice.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse Genome 430 2.0 Arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | Affymetrix GeneChIP Scanner 3000.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Hsiang-Ying,,Chen
| | Sample_contact_institute | IBMS
| | Sample_contact_address | 128 Sec. 2, Academia Rd.
| | Sample_contact_city | Taipei
| | Sample_contact_zip/postal_code | 115
| | Sample_contact_country | Taiwan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1045nnn/GSM1045756/suppl/GSM1045756_1363W.CEL.gz
| | Sample_series_id | GSE42601
| | Sample_series_id | GSE42604
| | Sample_data_row_count | 45037
| | |
|
GSM1045757 | GPL1261 |
|
Mutant testes at P21, biological rep3
|
testes, Dazap1 mutant
|
strain: mixed C57BL/6 and 129
genotype: Dazap1 mutant
tissue: testes
age: P21
|
1364F
|
| Sample_geo_accession | GSM1045757
| | Sample_status | Public on Jun 01 2013
| | Sample_submission_date | Nov 28 2012
| | Sample_last_update_date | Jul 30 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Not applicable.
| | Sample_growth_protocol_ch1 | Testes were dissected from P21 mice.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse Genome 430 2.0 Arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | Affymetrix GeneChIP Scanner 3000.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Hsiang-Ying,,Chen
| | Sample_contact_institute | IBMS
| | Sample_contact_address | 128 Sec. 2, Academia Rd.
| | Sample_contact_city | Taipei
| | Sample_contact_zip/postal_code | 115
| | Sample_contact_country | Taiwan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1045nnn/GSM1045757/suppl/GSM1045757_1364F.CEL.gz
| | Sample_series_id | GSE42601
| | Sample_series_id | GSE42604
| | Sample_data_row_count | 45037
| | |
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