Search results for the GEO ID: GSE42688 |
(Click on the check boxes provided under "Select for analysis", to initiate grouping) |
(Once the selection is made, click on "Add groups" in "Make groups for comparison", to make a group. Scroll down) |
|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM1047991 | GPL1261 |
|
GT_Male2
|
E14 Genital tubercle of Male
|
strain: FVB/N
Sex: Male
developmental stage: 14 dpc
theiler stage: 22
developmental landmark: E14
|
Amplification protocol
Target Amplified manufacturer/kit: TargetAmp™ 2-Round Aminoallyl-aRNA Amplification Kit 1.0 (EPICENTRE Biotechnologies)
Target Amplified protocol: Potter protocols
Rounds of amplification: 2
URL: http://www.gudmap.org/gudmap/pages/mic_submission.html?id=GUDMAP:20725
|
Sample_geo_accession | GSM1047991
| Sample_status | Public on Dec 04 2012
| Sample_submission_date | Dec 03 2012
| Sample_last_update_date | Dec 04 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_treatment_protocol_ch1 | Pooled sample: no
| Sample_treatment_protocol_ch1 | Dissection method: Genital tubercle region microdissected
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Qiagen: RNeasy
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | Biotin-X-X-NHS (EPICENTRE Biotechnologies)
| Sample_hyb_protocol | Affymetrix standard protocol
| Sample_hyb_protocol | Amount labeled target hybridization to array: 10 µg
| Sample_scan_protocol | -
| Sample_data_processing | Analysis method: Affymetrix GCOS and Gene Spring and Avadis programs. GCOS Tgt value: 1500
| Sample_platform_id | GPL1261
| Sample_contact_name | GUDMAP,,Developers
| Sample_contact_email | gudmap-editors@gudmap.org
| Sample_contact_phone | +44 131 3322471
| Sample_contact_laboratory | GUDMAP Database Group
| Sample_contact_institute | MRC Human Genetics Unit
| Sample_contact_address | Crewe Road
| Sample_contact_city | Edinburgh
| Sample_contact_zip/postal_code | EH4 2XU
| Sample_contact_country | United Kingdom
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1047nnn/GSM1047991/suppl/GSM1047991_GT_Male2.CEL.gz
| Sample_series_id | GSE42688
| Sample_data_row_count | 45101
| |
|
GSM1047992 | GPL1261 |
|
GT_Male3
|
E14 Genital tubercle of Male
|
strain: FVB/N
Sex: Male
developmental stage: 14 dpc
theiler stage: 22
developmental landmark: E14
|
Amplification protocol
Target Amplified manufacturer/kit: TargetAmp™ 2-Round Aminoallyl-aRNA Amplification Kit 1.0 (EPICENTRE Biotechnologies)
Target Amplified protocol: Potter protocols
Rounds of amplification: 2
URL: http://www.gudmap.org/gudmap/pages/mic_submission.html?id=GUDMAP:20726
|
Sample_geo_accession | GSM1047992
| Sample_status | Public on Dec 04 2012
| Sample_submission_date | Dec 03 2012
| Sample_last_update_date | Dec 04 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_treatment_protocol_ch1 | Pooled sample: no
| Sample_treatment_protocol_ch1 | Dissection method: Genital tubercle region microdissected
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Qiagen: RNeasy
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | Biotin-X-X-NHS (EPICENTRE Biotechnologies)
| Sample_hyb_protocol | Affymetrix standard protocol
| Sample_hyb_protocol | Amount labeled target hybridization to array: 10 µg
| Sample_scan_protocol | -
| Sample_data_processing | Analysis method: Affymetrix GCOS and Gene Spring and Avadis programs. GCOS Tgt value: 1500
| Sample_platform_id | GPL1261
| Sample_contact_name | GUDMAP,,Developers
| Sample_contact_email | gudmap-editors@gudmap.org
| Sample_contact_phone | +44 131 3322471
| Sample_contact_laboratory | GUDMAP Database Group
| Sample_contact_institute | MRC Human Genetics Unit
| Sample_contact_address | Crewe Road
| Sample_contact_city | Edinburgh
| Sample_contact_zip/postal_code | EH4 2XU
| Sample_contact_country | United Kingdom
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1047nnn/GSM1047992/suppl/GSM1047992_GT_Male3.CEL.gz
| Sample_series_id | GSE42688
| Sample_data_row_count | 45101
| |
|
GSM1047993 | GPL1261 |
|
GT_Male4
|
E14 Genital tubercle of Male
|
strain: FVB/N
Sex: Male
developmental stage: 14 dpc
theiler stage: 22
developmental landmark: E14
|
Amplification protocol
Target Amplified manufacturer/kit: TargetAmp™ 2-Round Aminoallyl-aRNA Amplification Kit 1.0 (EPICENTRE Biotechnologies)
Target Amplified protocol: Potter protocols
Rounds of amplification: 2
URL: http://www.gudmap.org/gudmap/pages/mic_submission.html?id=GUDMAP:20727
|
Sample_geo_accession | GSM1047993
| Sample_status | Public on Dec 04 2012
| Sample_submission_date | Dec 03 2012
| Sample_last_update_date | Dec 04 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_treatment_protocol_ch1 | Pooled sample: no
| Sample_treatment_protocol_ch1 | Dissection method: Genital tubercle region microdissected
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Qiagen: RNeasy
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | Biotin-X-X-NHS (EPICENTRE Biotechnologies)
| Sample_hyb_protocol | Affymetrix standard protocol
| Sample_hyb_protocol | Amount labeled target hybridization to array: 10 µg
| Sample_scan_protocol | -
| Sample_data_processing | Analysis method: Affymetrix GCOS and Gene Spring and Avadis programs. GCOS Tgt value: 1500
| Sample_platform_id | GPL1261
| Sample_contact_name | GUDMAP,,Developers
| Sample_contact_email | gudmap-editors@gudmap.org
| Sample_contact_phone | +44 131 3322471
| Sample_contact_laboratory | GUDMAP Database Group
| Sample_contact_institute | MRC Human Genetics Unit
| Sample_contact_address | Crewe Road
| Sample_contact_city | Edinburgh
| Sample_contact_zip/postal_code | EH4 2XU
| Sample_contact_country | United Kingdom
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1047nnn/GSM1047993/suppl/GSM1047993_GT_Male4.CEL.gz
| Sample_series_id | GSE42688
| Sample_data_row_count | 45101
| |
|
GSM1047994 | GPL1261 |
|
GT_Male1
|
E14 Genital tubercle of Male
|
strain: FVB/N
Sex: Male
developmental stage: 14 dpc
theiler stage: 22
developmental landmark: E14
|
Amplification protocol
Target Amplified manufacturer/kit: TargetAmp™ 2-Round Aminoallyl-aRNA Amplification Kit 1.0 (EPICENTRE Biotechnologies)
Target Amplified protocol: Potter protocols
Rounds of amplification: 2
URL: http://www.gudmap.org/gudmap/pages/mic_submission.html?id=GUDMAP:20728
|
Sample_geo_accession | GSM1047994
| Sample_status | Public on Dec 04 2012
| Sample_submission_date | Dec 03 2012
| Sample_last_update_date | Dec 04 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_treatment_protocol_ch1 | Pooled sample: no
| Sample_treatment_protocol_ch1 | Dissection method: Genital tubercle region microdissected
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Qiagen: RNeasy
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | Biotin-X-X-NHS (EPICENTRE Biotechnologies)
| Sample_hyb_protocol | Affymetrix standard protocol
| Sample_hyb_protocol | Amount labeled target hybridization to array: 10 µg
| Sample_scan_protocol | -
| Sample_data_processing | Analysis method: Affymetrix GCOS and Gene Spring and Avadis programs. GCOS Tgt value: 1500
| Sample_platform_id | GPL1261
| Sample_contact_name | GUDMAP,,Developers
| Sample_contact_email | gudmap-editors@gudmap.org
| Sample_contact_phone | +44 131 3322471
| Sample_contact_laboratory | GUDMAP Database Group
| Sample_contact_institute | MRC Human Genetics Unit
| Sample_contact_address | Crewe Road
| Sample_contact_city | Edinburgh
| Sample_contact_zip/postal_code | EH4 2XU
| Sample_contact_country | United Kingdom
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1047nnn/GSM1047994/suppl/GSM1047994_GT_Male1.CEL.gz
| Sample_series_id | GSE42688
| Sample_data_row_count | 45101
| |
|
GSM1047995 | GPL1261 |
|
GT_Female1
|
E14 Genital tubercle of female
|
strain: FVB/N
Sex: Female
developmental stage: 14 dpc
theiler stage: 22
developmental landmark: E14
|
Amplification protocol
Target Amplified manufacturer/kit: TargetAmp™ 2-Round Aminoallyl-aRNA Amplification Kit 1.0 (EPICENTRE Biotechnologies)
Target Amplified protocol: Potter protocols
Rounds of amplification: 2
URL: http://www.gudmap.org/gudmap/pages/mic_submission.html?id=GUDMAP:20729
|
Sample_geo_accession | GSM1047995
| Sample_status | Public on Dec 04 2012
| Sample_submission_date | Dec 03 2012
| Sample_last_update_date | Dec 04 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_treatment_protocol_ch1 | Pooled sample: no
| Sample_treatment_protocol_ch1 | Dissection method: Genital tubercle region microdissected
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Qiagen: RNeasy
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | Biotin-X-X-NHS (EPICENTRE Biotechnologies)
| Sample_hyb_protocol | Affymetrix standard protocol
| Sample_hyb_protocol | Amount labeled target hybridization to array: 10 µg
| Sample_scan_protocol | -
| Sample_data_processing | Analysis method: Affymetrix GCOS and Gene Spring and Avadis programs. GCOS Tgt value: 1500
| Sample_platform_id | GPL1261
| Sample_contact_name | GUDMAP,,Developers
| Sample_contact_email | gudmap-editors@gudmap.org
| Sample_contact_phone | +44 131 3322471
| Sample_contact_laboratory | GUDMAP Database Group
| Sample_contact_institute | MRC Human Genetics Unit
| Sample_contact_address | Crewe Road
| Sample_contact_city | Edinburgh
| Sample_contact_zip/postal_code | EH4 2XU
| Sample_contact_country | United Kingdom
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1047nnn/GSM1047995/suppl/GSM1047995_GT_Female1.CEL.gz
| Sample_series_id | GSE42688
| Sample_data_row_count | 45101
| |
|
GSM1047996 | GPL1261 |
|
GT_Female2
|
E14 Genital tubercle of female
|
strain: FVB/N
Sex: Female
developmental stage: 14 dpc
theiler stage: 22
developmental landmark: E14
|
Amplification protocol
Target Amplified manufacturer/kit: TargetAmp™ 2-Round Aminoallyl-aRNA Amplification Kit 1.0 (EPICENTRE Biotechnologies)
Target Amplified protocol: Potter protocols
Rounds of amplification: 2
URL: http://www.gudmap.org/gudmap/pages/mic_submission.html?id=GUDMAP:20730
|
Sample_geo_accession | GSM1047996
| Sample_status | Public on Dec 04 2012
| Sample_submission_date | Dec 03 2012
| Sample_last_update_date | Dec 04 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_treatment_protocol_ch1 | Pooled sample: no
| Sample_treatment_protocol_ch1 | Dissection method: Genital tubercle region microdissected
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Qiagen: RNeasy
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | Biotin-X-X-NHS (EPICENTRE Biotechnologies)
| Sample_hyb_protocol | Affymetrix standard protocol
| Sample_hyb_protocol | Amount labeled target hybridization to array: 10 µg
| Sample_scan_protocol | -
| Sample_data_processing | Analysis method: Affymetrix GCOS and Gene Spring and Avadis programs. GCOS Tgt value: 1500
| Sample_platform_id | GPL1261
| Sample_contact_name | GUDMAP,,Developers
| Sample_contact_email | gudmap-editors@gudmap.org
| Sample_contact_phone | +44 131 3322471
| Sample_contact_laboratory | GUDMAP Database Group
| Sample_contact_institute | MRC Human Genetics Unit
| Sample_contact_address | Crewe Road
| Sample_contact_city | Edinburgh
| Sample_contact_zip/postal_code | EH4 2XU
| Sample_contact_country | United Kingdom
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1047nnn/GSM1047996/suppl/GSM1047996_GT_Female2.CEL.gz
| Sample_series_id | GSE42688
| Sample_data_row_count | 45101
| |
|
GSM1047997 | GPL1261 |
|
GT_Female3
|
E14 Genital tubercle of female
|
strain: FVB/N
Sex: Female
developmental stage: 14 dpc
theiler stage: 22
developmental landmark: E14
|
Amplification protocol
Target Amplified manufacturer/kit: TargetAmp™ 2-Round Aminoallyl-aRNA Amplification Kit 1.0 (EPICENTRE Biotechnologies)
Target Amplified protocol: Potter protocols
Rounds of amplification: 2
URL: http://www.gudmap.org/gudmap/pages/mic_submission.html?id=GUDMAP:20731
|
Sample_geo_accession | GSM1047997
| Sample_status | Public on Dec 04 2012
| Sample_submission_date | Dec 03 2012
| Sample_last_update_date | Dec 04 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_treatment_protocol_ch1 | Pooled sample: no
| Sample_treatment_protocol_ch1 | Dissection method: Genital tubercle region microdissected
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Qiagen: RNeasy
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | Biotin-X-X-NHS (EPICENTRE Biotechnologies)
| Sample_hyb_protocol | Affymetrix standard protocol
| Sample_hyb_protocol | Amount labeled target hybridization to array: 10 µg
| Sample_scan_protocol | -
| Sample_data_processing | Analysis method: Affymetrix GCOS and Gene Spring and Avadis programs. GCOS Tgt value: 1500
| Sample_platform_id | GPL1261
| Sample_contact_name | GUDMAP,,Developers
| Sample_contact_email | gudmap-editors@gudmap.org
| Sample_contact_phone | +44 131 3322471
| Sample_contact_laboratory | GUDMAP Database Group
| Sample_contact_institute | MRC Human Genetics Unit
| Sample_contact_address | Crewe Road
| Sample_contact_city | Edinburgh
| Sample_contact_zip/postal_code | EH4 2XU
| Sample_contact_country | United Kingdom
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1047nnn/GSM1047997/suppl/GSM1047997_GT_Female3.CEL.gz
| Sample_series_id | GSE42688
| Sample_data_row_count | 45101
| |
|
GSM1047998 | GPL1261 |
|
GT_Female4
|
E14 Genital tubercle of female
|
strain: FVB/N
Sex: Female
developmental stage: 14 dpc
theiler stage: 22
developmental landmark: E14
|
Amplification protocol
Target Amplified manufacturer/kit: TargetAmp™ 2-Round Aminoallyl-aRNA Amplification Kit 1.0 (EPICENTRE Biotechnologies)
Target Amplified protocol: Potter protocols
Rounds of amplification: 2
URL: http://www.gudmap.org/gudmap/pages/mic_submission.html?id=GUDMAP:20732
|
Sample_geo_accession | GSM1047998
| Sample_status | Public on Dec 04 2012
| Sample_submission_date | Dec 03 2012
| Sample_last_update_date | Dec 04 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_treatment_protocol_ch1 | Pooled sample: no
| Sample_treatment_protocol_ch1 | Dissection method: Genital tubercle region microdissected
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Qiagen: RNeasy
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | Biotin-X-X-NHS (EPICENTRE Biotechnologies)
| Sample_hyb_protocol | Affymetrix standard protocol
| Sample_hyb_protocol | Amount labeled target hybridization to array: 10 µg
| Sample_scan_protocol | -
| Sample_data_processing | Analysis method: Affymetrix GCOS and Gene Spring and Avadis programs. GCOS Tgt value: 1500
| Sample_platform_id | GPL1261
| Sample_contact_name | GUDMAP,,Developers
| Sample_contact_email | gudmap-editors@gudmap.org
| Sample_contact_phone | +44 131 3322471
| Sample_contact_laboratory | GUDMAP Database Group
| Sample_contact_institute | MRC Human Genetics Unit
| Sample_contact_address | Crewe Road
| Sample_contact_city | Edinburgh
| Sample_contact_zip/postal_code | EH4 2XU
| Sample_contact_country | United Kingdom
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1047nnn/GSM1047998/suppl/GSM1047998_GT_Female4.CEL.gz
| Sample_series_id | GSE42688
| Sample_data_row_count | 45101
| |
|
|
|
Make groups for comparisons |
(2 groups will be compared at a time) |
|
Select GSMs and click on "Add groups" |
Enter the group name here: |
|
|
|