Search results for the GEO ID: GSE42733  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM1048929 | GPL570 |
|
NLC#1
|
PBMC
|
disease state: chronic lymphocytic leukemia
cell type: purified nurse-like cell
|
purified nurse-like cell
|
| Sample_geo_accession | GSM1048929
| | Sample_status | Public on Dec 11 2012
| | Sample_submission_date | Dec 04 2012
| | Sample_last_update_date | Dec 11 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | cell samples were purified from the cell culture on the basis of CD14 or CD163 phenotypes
| | Sample_growth_protocol_ch1 | in vitro cell culture in complete culture medium (RPMI 1640 + 10% fetal calf serum)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | RNA were hybridized for 16 hr at 45C on Affymetrix HGU133 plus 2.0 panGenome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings. Raw data were log (base 2)-transformed and normalized by RMA.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jean Jacques,,FOURNIE
| | Sample_contact_email | jean-jacques.fournie@inserm.fr
| | Sample_contact_phone | +33562748364
| | Sample_contact_fax | +3362744558
| | Sample_contact_laboratory | Cancer Research Center of Toulouse
| | Sample_contact_department | oncology
| | Sample_contact_institute | INSERM
| | Sample_contact_address | CHU Purpan
| | Sample_contact_city | Toulouse
| | Sample_contact_zip/postal_code | 31024
| | Sample_contact_country | France
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1048nnn/GSM1048929/suppl/GSM1048929_CLL_NLC-1.CEL.gz
| | Sample_series_id | GSE42733
| | Sample_data_row_count | 54675
| | |
|
GSM1048930 | GPL570 |
|
NLC#2
|
PBMC
|
disease state: chronic lymphocytic leukemia
cell type: purified nurse-like cell
|
purified nurse-like cell
|
| Sample_geo_accession | GSM1048930
| | Sample_status | Public on Dec 11 2012
| | Sample_submission_date | Dec 04 2012
| | Sample_last_update_date | Dec 11 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | cell samples were purified from the cell culture on the basis of CD14 or CD163 phenotypes
| | Sample_growth_protocol_ch1 | in vitro cell culture in complete culture medium (RPMI 1640 + 10% fetal calf serum)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | RNA were hybridized for 16 hr at 45C on Affymetrix HGU133 plus 2.0 panGenome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings. Raw data were log (base 2)-transformed and normalized by RMA.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jean Jacques,,FOURNIE
| | Sample_contact_email | jean-jacques.fournie@inserm.fr
| | Sample_contact_phone | +33562748364
| | Sample_contact_fax | +3362744558
| | Sample_contact_laboratory | Cancer Research Center of Toulouse
| | Sample_contact_department | oncology
| | Sample_contact_institute | INSERM
| | Sample_contact_address | CHU Purpan
| | Sample_contact_city | Toulouse
| | Sample_contact_zip/postal_code | 31024
| | Sample_contact_country | France
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1048nnn/GSM1048930/suppl/GSM1048930_CLL_NLC-2.CEL.gz
| | Sample_series_id | GSE42733
| | Sample_data_row_count | 54675
| | |
|
GSM1048931 | GPL570 |
|
NLC#3
|
PBMC
|
disease state: chronic lymphocytic leukemia
cell type: purified nurse-like cell
|
purified nurse-like cell
|
| Sample_geo_accession | GSM1048931
| | Sample_status | Public on Dec 11 2012
| | Sample_submission_date | Dec 04 2012
| | Sample_last_update_date | Dec 11 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | cell samples were purified from the cell culture on the basis of CD14 or CD163 phenotypes
| | Sample_growth_protocol_ch1 | in vitro cell culture in complete culture medium (RPMI 1640 + 10% fetal calf serum)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | RNA were hybridized for 16 hr at 45C on Affymetrix HGU133 plus 2.0 panGenome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings. Raw data were log (base 2)-transformed and normalized by RMA.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jean Jacques,,FOURNIE
| | Sample_contact_email | jean-jacques.fournie@inserm.fr
| | Sample_contact_phone | +33562748364
| | Sample_contact_fax | +3362744558
| | Sample_contact_laboratory | Cancer Research Center of Toulouse
| | Sample_contact_department | oncology
| | Sample_contact_institute | INSERM
| | Sample_contact_address | CHU Purpan
| | Sample_contact_city | Toulouse
| | Sample_contact_zip/postal_code | 31024
| | Sample_contact_country | France
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1048nnn/GSM1048931/suppl/GSM1048931_CLL_NLC-3.CEL.gz
| | Sample_series_id | GSE42733
| | Sample_data_row_count | 54675
| | |
|
GSM1048932 | GPL570 |
|
NLC#4
|
PBMC
|
disease state: chronic lymphocytic leukemia
cell type: purified nurse-like cell
|
purified nurse-like cell
|
| Sample_geo_accession | GSM1048932
| | Sample_status | Public on Dec 11 2012
| | Sample_submission_date | Dec 04 2012
| | Sample_last_update_date | Dec 11 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | cell samples were purified from the cell culture on the basis of CD14 or CD163 phenotypes
| | Sample_growth_protocol_ch1 | in vitro cell culture in complete culture medium (RPMI 1640 + 10% fetal calf serum)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | RNA were hybridized for 16 hr at 45C on Affymetrix HGU133 plus 2.0 panGenome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings. Raw data were log (base 2)-transformed and normalized by RMA.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jean Jacques,,FOURNIE
| | Sample_contact_email | jean-jacques.fournie@inserm.fr
| | Sample_contact_phone | +33562748364
| | Sample_contact_fax | +3362744558
| | Sample_contact_laboratory | Cancer Research Center of Toulouse
| | Sample_contact_department | oncology
| | Sample_contact_institute | INSERM
| | Sample_contact_address | CHU Purpan
| | Sample_contact_city | Toulouse
| | Sample_contact_zip/postal_code | 31024
| | Sample_contact_country | France
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1048nnn/GSM1048932/suppl/GSM1048932_CLL_NLC-4.CEL.gz
| | Sample_series_id | GSE42733
| | Sample_data_row_count | 54675
| | |
|
GSM1048933 | GPL570 |
|
NLC#5
|
PBMC
|
disease state: chronic lymphocytic leukemia
cell type: purified nurse-like cell
|
purified nurse-like cell
|
| Sample_geo_accession | GSM1048933
| | Sample_status | Public on Dec 11 2012
| | Sample_submission_date | Dec 04 2012
| | Sample_last_update_date | Dec 11 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | cell samples were purified from the cell culture on the basis of CD14 or CD163 phenotypes
| | Sample_growth_protocol_ch1 | in vitro cell culture in complete culture medium (RPMI 1640 + 10% fetal calf serum)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | RNA were hybridized for 16 hr at 45C on Affymetrix HGU133 plus 2.0 panGenome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings. Raw data were log (base 2)-transformed and normalized by RMA.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jean Jacques,,FOURNIE
| | Sample_contact_email | jean-jacques.fournie@inserm.fr
| | Sample_contact_phone | +33562748364
| | Sample_contact_fax | +3362744558
| | Sample_contact_laboratory | Cancer Research Center of Toulouse
| | Sample_contact_department | oncology
| | Sample_contact_institute | INSERM
| | Sample_contact_address | CHU Purpan
| | Sample_contact_city | Toulouse
| | Sample_contact_zip/postal_code | 31024
| | Sample_contact_country | France
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1048nnn/GSM1048933/suppl/GSM1048933_CLL_NLC-5.CEL.gz
| | Sample_series_id | GSE42733
| | Sample_data_row_count | 54675
| | |
|
GSM1048934 | GPL570 |
|
NLC#6
|
PBMC
|
disease state: chronic lymphocytic leukemia
cell type: purified nurse-like cell
|
purified nurse-like cell
|
| Sample_geo_accession | GSM1048934
| | Sample_status | Public on Dec 11 2012
| | Sample_submission_date | Dec 04 2012
| | Sample_last_update_date | Dec 11 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | cell samples were purified from the cell culture on the basis of CD14 or CD163 phenotypes
| | Sample_growth_protocol_ch1 | in vitro cell culture in complete culture medium (RPMI 1640 + 10% fetal calf serum)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | RNA were hybridized for 16 hr at 45C on Affymetrix HGU133 plus 2.0 panGenome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings. Raw data were log (base 2)-transformed and normalized by RMA.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jean Jacques,,FOURNIE
| | Sample_contact_email | jean-jacques.fournie@inserm.fr
| | Sample_contact_phone | +33562748364
| | Sample_contact_fax | +3362744558
| | Sample_contact_laboratory | Cancer Research Center of Toulouse
| | Sample_contact_department | oncology
| | Sample_contact_institute | INSERM
| | Sample_contact_address | CHU Purpan
| | Sample_contact_city | Toulouse
| | Sample_contact_zip/postal_code | 31024
| | Sample_contact_country | France
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1048nnn/GSM1048934/suppl/GSM1048934_CLL_NLC-6.CEL.gz
| | Sample_series_id | GSE42733
| | Sample_data_row_count | 54675
| | |
|
GSM1048935 | GPL570 |
|
NLC#7
|
PBMC
|
disease state: chronic lymphocytic leukemia
cell type: purified nurse-like cell
|
purified nurse-like cell
|
| Sample_geo_accession | GSM1048935
| | Sample_status | Public on Dec 11 2012
| | Sample_submission_date | Dec 04 2012
| | Sample_last_update_date | Dec 11 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | cell samples were purified from the cell culture on the basis of CD14 or CD163 phenotypes
| | Sample_growth_protocol_ch1 | in vitro cell culture in complete culture medium (RPMI 1640 + 10% fetal calf serum)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | RNA were hybridized for 16 hr at 45C on Affymetrix HGU133 plus 2.0 panGenome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings. Raw data were log (base 2)-transformed and normalized by RMA.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jean Jacques,,FOURNIE
| | Sample_contact_email | jean-jacques.fournie@inserm.fr
| | Sample_contact_phone | +33562748364
| | Sample_contact_fax | +3362744558
| | Sample_contact_laboratory | Cancer Research Center of Toulouse
| | Sample_contact_department | oncology
| | Sample_contact_institute | INSERM
| | Sample_contact_address | CHU Purpan
| | Sample_contact_city | Toulouse
| | Sample_contact_zip/postal_code | 31024
| | Sample_contact_country | France
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1048nnn/GSM1048935/suppl/GSM1048935_CLL_NLC-7.CEL.gz
| | Sample_series_id | GSE42733
| | Sample_data_row_count | 54675
| | |
|
GSM1048936 | GPL570 |
|
NLC#8
|
PBMC
|
disease state: chronic lymphocytic leukemia
cell type: purified nurse-like cell
|
purified nurse-like cell
|
| Sample_geo_accession | GSM1048936
| | Sample_status | Public on Dec 11 2012
| | Sample_submission_date | Dec 04 2012
| | Sample_last_update_date | Dec 11 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | cell samples were purified from the cell culture on the basis of CD14 or CD163 phenotypes
| | Sample_growth_protocol_ch1 | in vitro cell culture in complete culture medium (RPMI 1640 + 10% fetal calf serum)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | RNA were hybridized for 16 hr at 45C on Affymetrix HGU133 plus 2.0 panGenome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings. Raw data were log (base 2)-transformed and normalized by RMA.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jean Jacques,,FOURNIE
| | Sample_contact_email | jean-jacques.fournie@inserm.fr
| | Sample_contact_phone | +33562748364
| | Sample_contact_fax | +3362744558
| | Sample_contact_laboratory | Cancer Research Center of Toulouse
| | Sample_contact_department | oncology
| | Sample_contact_institute | INSERM
| | Sample_contact_address | CHU Purpan
| | Sample_contact_city | Toulouse
| | Sample_contact_zip/postal_code | 31024
| | Sample_contact_country | France
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1048nnn/GSM1048936/suppl/GSM1048936_CLL_NLC-8.CEL.gz
| | Sample_series_id | GSE42733
| | Sample_data_row_count | 54675
| | |
|
GSM1048937 | GPL570 |
|
NLC#9
|
PBMC
|
disease state: chronic lymphocytic leukemia
cell type: purified nurse-like cell
|
purified nurse-like cell
|
| Sample_geo_accession | GSM1048937
| | Sample_status | Public on Dec 11 2012
| | Sample_submission_date | Dec 04 2012
| | Sample_last_update_date | Dec 11 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | cell samples were purified from the cell culture on the basis of CD14 or CD163 phenotypes
| | Sample_growth_protocol_ch1 | in vitro cell culture in complete culture medium (RPMI 1640 + 10% fetal calf serum)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | RNA were hybridized for 16 hr at 45C on Affymetrix HGU133 plus 2.0 panGenome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings. Raw data were log (base 2)-transformed and normalized by RMA.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jean Jacques,,FOURNIE
| | Sample_contact_email | jean-jacques.fournie@inserm.fr
| | Sample_contact_phone | +33562748364
| | Sample_contact_fax | +3362744558
| | Sample_contact_laboratory | Cancer Research Center of Toulouse
| | Sample_contact_department | oncology
| | Sample_contact_institute | INSERM
| | Sample_contact_address | CHU Purpan
| | Sample_contact_city | Toulouse
| | Sample_contact_zip/postal_code | 31024
| | Sample_contact_country | France
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1048nnn/GSM1048937/suppl/GSM1048937_CLL_NLC-9.CEL.gz
| | Sample_series_id | GSE42733
| | Sample_data_row_count | 54675
| | |
|
GSM1048938 | GPL570 |
|
NLC#10
|
PBMC
|
disease state: chronic lymphocytic leukemia
cell type: purified nurse-like cell
|
purified nurse-like cell
|
| Sample_geo_accession | GSM1048938
| | Sample_status | Public on Dec 11 2012
| | Sample_submission_date | Dec 04 2012
| | Sample_last_update_date | Dec 11 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | cell samples were purified from the cell culture on the basis of CD14 or CD163 phenotypes
| | Sample_growth_protocol_ch1 | in vitro cell culture in complete culture medium (RPMI 1640 + 10% fetal calf serum)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | RNA were hybridized for 16 hr at 45C on Affymetrix HGU133 plus 2.0 panGenome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings. Raw data were log (base 2)-transformed and normalized by RMA.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jean Jacques,,FOURNIE
| | Sample_contact_email | jean-jacques.fournie@inserm.fr
| | Sample_contact_phone | +33562748364
| | Sample_contact_fax | +3362744558
| | Sample_contact_laboratory | Cancer Research Center of Toulouse
| | Sample_contact_department | oncology
| | Sample_contact_institute | INSERM
| | Sample_contact_address | CHU Purpan
| | Sample_contact_city | Toulouse
| | Sample_contact_zip/postal_code | 31024
| | Sample_contact_country | France
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1048nnn/GSM1048938/suppl/GSM1048938_CLL_NLC-10.CEL.gz
| | Sample_series_id | GSE42733
| | Sample_data_row_count | 54675
| | |
|
GSM1048939 | GPL570 |
|
Monocyte#1
|
PBMC
|
disease state: Healthy donor
cell type: purified CD14 monocyte
|
purified CD14 monocyte
|
| Sample_geo_accession | GSM1048939
| | Sample_status | Public on Dec 11 2012
| | Sample_submission_date | Dec 04 2012
| | Sample_last_update_date | Dec 11 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | cell samples were purified from the cell culture on the basis of CD14 or CD163 phenotypes
| | Sample_growth_protocol_ch1 | in vitro cell culture in complete culture medium (RPMI 1640 + 10% fetal calf serum)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | RNA were hybridized for 16 hr at 45C on Affymetrix HGU133 plus 2.0 panGenome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings. Raw data were log (base 2)-transformed and normalized by RMA.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jean Jacques,,FOURNIE
| | Sample_contact_email | jean-jacques.fournie@inserm.fr
| | Sample_contact_phone | +33562748364
| | Sample_contact_fax | +3362744558
| | Sample_contact_laboratory | Cancer Research Center of Toulouse
| | Sample_contact_department | oncology
| | Sample_contact_institute | INSERM
| | Sample_contact_address | CHU Purpan
| | Sample_contact_city | Toulouse
| | Sample_contact_zip/postal_code | 31024
| | Sample_contact_country | France
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1048nnn/GSM1048939/suppl/GSM1048939_monocyte-1.CEL.gz
| | Sample_series_id | GSE42733
| | Sample_data_row_count | 54675
| | |
|
GSM1048940 | GPL570 |
|
Monocyte#2
|
PBMC
|
disease state: Healthy donor
cell type: purified CD14 monocyte
|
purified CD14 monocyte
|
| Sample_geo_accession | GSM1048940
| | Sample_status | Public on Dec 11 2012
| | Sample_submission_date | Dec 04 2012
| | Sample_last_update_date | Dec 11 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | cell samples were purified from the cell culture on the basis of CD14 or CD163 phenotypes
| | Sample_growth_protocol_ch1 | in vitro cell culture in complete culture medium (RPMI 1640 + 10% fetal calf serum)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | RNA were hybridized for 16 hr at 45C on Affymetrix HGU133 plus 2.0 panGenome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings. Raw data were log (base 2)-transformed and normalized by RMA.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jean Jacques,,FOURNIE
| | Sample_contact_email | jean-jacques.fournie@inserm.fr
| | Sample_contact_phone | +33562748364
| | Sample_contact_fax | +3362744558
| | Sample_contact_laboratory | Cancer Research Center of Toulouse
| | Sample_contact_department | oncology
| | Sample_contact_institute | INSERM
| | Sample_contact_address | CHU Purpan
| | Sample_contact_city | Toulouse
| | Sample_contact_zip/postal_code | 31024
| | Sample_contact_country | France
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1048nnn/GSM1048940/suppl/GSM1048940_monocyte-2.CEL.gz
| | Sample_series_id | GSE42733
| | Sample_data_row_count | 54675
| | |
|
GSM1048941 | GPL570 |
|
Monocyte#3
|
PBMC
|
disease state: Healthy donor
cell type: purified CD14 monocyte
|
purified CD14 monocyte
|
| Sample_geo_accession | GSM1048941
| | Sample_status | Public on Dec 11 2012
| | Sample_submission_date | Dec 04 2012
| | Sample_last_update_date | Dec 11 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | cell samples were purified from the cell culture on the basis of CD14 or CD163 phenotypes
| | Sample_growth_protocol_ch1 | in vitro cell culture in complete culture medium (RPMI 1640 + 10% fetal calf serum)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | RNA were hybridized for 16 hr at 45C on Affymetrix HGU133 plus 2.0 panGenome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings. Raw data were log (base 2)-transformed and normalized by RMA.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jean Jacques,,FOURNIE
| | Sample_contact_email | jean-jacques.fournie@inserm.fr
| | Sample_contact_phone | +33562748364
| | Sample_contact_fax | +3362744558
| | Sample_contact_laboratory | Cancer Research Center of Toulouse
| | Sample_contact_department | oncology
| | Sample_contact_institute | INSERM
| | Sample_contact_address | CHU Purpan
| | Sample_contact_city | Toulouse
| | Sample_contact_zip/postal_code | 31024
| | Sample_contact_country | France
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1048nnn/GSM1048941/suppl/GSM1048941_monocyte-3.CEL.gz
| | Sample_series_id | GSE42733
| | Sample_data_row_count | 54675
| | |
|
GSM1048942 | GPL570 |
|
Monocyte#4
|
PBMC
|
disease state: Healthy donor
cell type: purified CD14 monocyte
|
purified CD14 monocyte
|
| Sample_geo_accession | GSM1048942
| | Sample_status | Public on Dec 11 2012
| | Sample_submission_date | Dec 04 2012
| | Sample_last_update_date | Dec 11 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | cell samples were purified from the cell culture on the basis of CD14 or CD163 phenotypes
| | Sample_growth_protocol_ch1 | in vitro cell culture in complete culture medium (RPMI 1640 + 10% fetal calf serum)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | RNA were hybridized for 16 hr at 45C on Affymetrix HGU133 plus 2.0 panGenome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings. Raw data were log (base 2)-transformed and normalized by RMA.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jean Jacques,,FOURNIE
| | Sample_contact_email | jean-jacques.fournie@inserm.fr
| | Sample_contact_phone | +33562748364
| | Sample_contact_fax | +3362744558
| | Sample_contact_laboratory | Cancer Research Center of Toulouse
| | Sample_contact_department | oncology
| | Sample_contact_institute | INSERM
| | Sample_contact_address | CHU Purpan
| | Sample_contact_city | Toulouse
| | Sample_contact_zip/postal_code | 31024
| | Sample_contact_country | France
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1048nnn/GSM1048942/suppl/GSM1048942_monocyte-4.CEL.gz
| | Sample_series_id | GSE42733
| | Sample_data_row_count | 54675
| | |
|
GSM1048943 | GPL570 |
|
Monocyte#5
|
PBMC
|
disease state: Healthy donor
cell type: purified CD14 monocyte
|
purified CD14 monocyte
|
| Sample_geo_accession | GSM1048943
| | Sample_status | Public on Dec 11 2012
| | Sample_submission_date | Dec 04 2012
| | Sample_last_update_date | Dec 11 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | cell samples were purified from the cell culture on the basis of CD14 or CD163 phenotypes
| | Sample_growth_protocol_ch1 | in vitro cell culture in complete culture medium (RPMI 1640 + 10% fetal calf serum)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | RNA were hybridized for 16 hr at 45C on Affymetrix HGU133 plus 2.0 panGenome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings. Raw data were log (base 2)-transformed and normalized by RMA.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jean Jacques,,FOURNIE
| | Sample_contact_email | jean-jacques.fournie@inserm.fr
| | Sample_contact_phone | +33562748364
| | Sample_contact_fax | +3362744558
| | Sample_contact_laboratory | Cancer Research Center of Toulouse
| | Sample_contact_department | oncology
| | Sample_contact_institute | INSERM
| | Sample_contact_address | CHU Purpan
| | Sample_contact_city | Toulouse
| | Sample_contact_zip/postal_code | 31024
| | Sample_contact_country | France
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1048nnn/GSM1048943/suppl/GSM1048943_monocyte-5.CEL.gz
| | Sample_series_id | GSE42733
| | Sample_data_row_count | 54675
| | |
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