Search results for the GEO ID: GSE42777  |
(Click on the check boxes provided under "Select for analysis", to initiate grouping) |
(Once the selection is made, click on "Add groups" in "Make groups for comparison", to make a group. Scroll down) |
|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM1049775 | GPL1261 |
|
Control DG, biological rep1
|
DG of adult control mouse
|
strain/background: (BALB/c x C57BL/6J) F1
genotype: wild-type
tissue: dentate gyrus
age: 36w
|
Shn2_01_DG
Gene expression data from the DG of a control mouse.
(BALB/c x C57BL/6J) F1: obtained by breeding heterozygote mice(+/-) with a C57BL/6J and BALB/cA background.
|
| Sample_geo_accession | GSM1049775
| | Sample_status | Public on Aug 13 2013
| | Sample_submission_date | Dec 06 2012
| | Sample_last_update_date | Aug 13 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | None
| | Sample_growth_protocol_ch1 | None
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA and cleanup by the RNeasy Micro kit (QIAGEN) was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 100ng total RNA.
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Mouse Genome 430 2.0 Arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using Affymetrix GeneChip Scanner 3000 (GCS3000).
| | Sample_data_processing | The data were analyzed with Affymetrix Expression Console (version 1.1). The normalization used in RMA is quantile normalization.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Juzoh,,Umemori
| | Sample_contact_email | jumemori@fujita-hu.ac.jp
| | Sample_contact_institute | Fujita Health University
| | Sample_contact_address | 1-98 Kutsukakecho, Dengakugakubo
| | Sample_contact_city | Toyoake
| | Sample_contact_zip/postal_code | 470-1192
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1049nnn/GSM1049775/suppl/GSM1049775_Shn2_DG_01_Mouse430_2_.CEL.gz
| | Sample_series_id | GSE42777
| | Sample_series_id | GSE42778
| | Sample_data_row_count | 45101
| | |
|
GSM1049776 | GPL1261 |
|
Mutant DG, biological rep1
|
DG of adult Shn-2 mutant mouse
|
strain/background: (BALB/c x C57BL/6J) F1
genotype: Shn-2 mutant
tissue: dentate gyrus
age: 36w
|
Shn2_02_DG
Gene expression data from the DG of a Shn-2 mutant mouse.
(BALB/c x C57BL/6J) F1: obtained by breeding heterozygote mice(+/-) with a C57BL/6J and BALB/cA background.
|
| Sample_geo_accession | GSM1049776
| | Sample_status | Public on Aug 13 2013
| | Sample_submission_date | Dec 06 2012
| | Sample_last_update_date | Aug 13 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | None
| | Sample_growth_protocol_ch1 | None
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA and cleanup by the RNeasy Micro kit (QIAGEN) was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 100ng total RNA.
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Mouse Genome 430 2.0 Arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using Affymetrix GeneChip Scanner 3000 (GCS3000).
| | Sample_data_processing | The data were analyzed with Affymetrix Expression Console (version 1.1). The normalization used in RMA is quantile normalization.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Juzoh,,Umemori
| | Sample_contact_email | jumemori@fujita-hu.ac.jp
| | Sample_contact_institute | Fujita Health University
| | Sample_contact_address | 1-98 Kutsukakecho, Dengakugakubo
| | Sample_contact_city | Toyoake
| | Sample_contact_zip/postal_code | 470-1192
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1049nnn/GSM1049776/suppl/GSM1049776_Shn2_DG_02_Mouse430_2_.CEL.gz
| | Sample_series_id | GSE42777
| | Sample_series_id | GSE42778
| | Sample_data_row_count | 45101
| | |
|
GSM1049777 | GPL1261 |
|
Control DG, biological rep2
|
DG of adult control mouse
|
strain/background: (BALB/c x C57BL/6J) F1
genotype: wild-type
tissue: dentate gyrus
age: 36w
|
Shn2_03_DG
Gene expression data from the DG of a control mouse.
(BALB/c x C57BL/6J) F1: obtained by breeding heterozygote mice(+/-) with a C57BL/6J and BALB/cA background.
|
| Sample_geo_accession | GSM1049777
| | Sample_status | Public on Aug 13 2013
| | Sample_submission_date | Dec 06 2012
| | Sample_last_update_date | Aug 13 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | None
| | Sample_growth_protocol_ch1 | None
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA and cleanup by the RNeasy Micro kit (QIAGEN) was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 100ng total RNA.
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Mouse Genome 430 2.0 Arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using Affymetrix GeneChip Scanner 3000 (GCS3000).
| | Sample_data_processing | The data were analyzed with Affymetrix Expression Console (version 1.1). The normalization used in RMA is quantile normalization.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Juzoh,,Umemori
| | Sample_contact_email | jumemori@fujita-hu.ac.jp
| | Sample_contact_institute | Fujita Health University
| | Sample_contact_address | 1-98 Kutsukakecho, Dengakugakubo
| | Sample_contact_city | Toyoake
| | Sample_contact_zip/postal_code | 470-1192
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1049nnn/GSM1049777/suppl/GSM1049777_Shn2_DG_03_Mouse430_2_.CEL.gz
| | Sample_series_id | GSE42777
| | Sample_series_id | GSE42778
| | Sample_data_row_count | 45101
| | |
|
GSM1049778 | GPL1261 |
|
Mutant DG, biological rep2
|
DG of adult Shn-2 mutant mouse
|
strain/background: (BALB/c x C57BL/6J) F1
genotype: Shn-2 mutant
tissue: dentate gyrus
age: 36w
|
Shn2_04_DG
Gene expression data from the DG of a Shn-2 mutant mouse.
(BALB/c x C57BL/6J) F1: obtained by breeding heterozygote mice(+/-) with a C57BL/6J and BALB/cA background.
|
| Sample_geo_accession | GSM1049778
| | Sample_status | Public on Aug 13 2013
| | Sample_submission_date | Dec 06 2012
| | Sample_last_update_date | Aug 13 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | None
| | Sample_growth_protocol_ch1 | None
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA and cleanup by the RNeasy Micro kit (QIAGEN) was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 100ng total RNA.
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Mouse Genome 430 2.0 Arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using Affymetrix GeneChip Scanner 3000 (GCS3000).
| | Sample_data_processing | The data were analyzed with Affymetrix Expression Console (version 1.1). The normalization used in RMA is quantile normalization.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Juzoh,,Umemori
| | Sample_contact_email | jumemori@fujita-hu.ac.jp
| | Sample_contact_institute | Fujita Health University
| | Sample_contact_address | 1-98 Kutsukakecho, Dengakugakubo
| | Sample_contact_city | Toyoake
| | Sample_contact_zip/postal_code | 470-1192
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1049nnn/GSM1049778/suppl/GSM1049778_Shn2_DG_04_Mouse430_2_.CEL.gz
| | Sample_series_id | GSE42777
| | Sample_series_id | GSE42778
| | Sample_data_row_count | 45101
| | |
|
GSM1049779 | GPL1261 |
|
Control DG, biological rep3
|
DG of adult control mouse
|
strain/background: (BALB/c x C57BL/6J) F1
genotype: wild-type
tissue: dentate gyrus
age: 36w
|
Shn2_05_DG
Gene expression data from the DG of a control mouse.
(BALB/c x C57BL/6J) F1: obtained by breeding heterozygote mice(+/-) with a C57BL/6J and BALB/cA background.
|
| Sample_geo_accession | GSM1049779
| | Sample_status | Public on Aug 13 2013
| | Sample_submission_date | Dec 06 2012
| | Sample_last_update_date | Aug 13 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | None
| | Sample_growth_protocol_ch1 | None
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA and cleanup by the RNeasy Micro kit (QIAGEN) was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 100ng total RNA.
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Mouse Genome 430 2.0 Arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using Affymetrix GeneChip Scanner 3000 (GCS3000).
| | Sample_data_processing | The data were analyzed with Affymetrix Expression Console (version 1.1). The normalization used in RMA is quantile normalization.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Juzoh,,Umemori
| | Sample_contact_email | jumemori@fujita-hu.ac.jp
| | Sample_contact_institute | Fujita Health University
| | Sample_contact_address | 1-98 Kutsukakecho, Dengakugakubo
| | Sample_contact_city | Toyoake
| | Sample_contact_zip/postal_code | 470-1192
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1049nnn/GSM1049779/suppl/GSM1049779_Shn2_DG_05_Mouse430_2_.CEL.gz
| | Sample_series_id | GSE42777
| | Sample_series_id | GSE42778
| | Sample_data_row_count | 45101
| | |
|
GSM1049780 | GPL1261 |
|
Mutant DG, biological rep3
|
DG of adult Shn-2 mutant mouse
|
strain/background: (BALB/c x C57BL/6J) F1
genotype: Shn-2 mutant
tissue: dentate gyrus
age: 36w
|
Shn2_06_DG
Gene expression data from the DG of a Shn-2 mutant mouse.
(BALB/c x C57BL/6J) F1: obtained by breeding heterozygote mice(+/-) with a C57BL/6J and BALB/cA background.
|
| Sample_geo_accession | GSM1049780
| | Sample_status | Public on Aug 13 2013
| | Sample_submission_date | Dec 06 2012
| | Sample_last_update_date | Aug 13 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | None
| | Sample_growth_protocol_ch1 | None
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA and cleanup by the RNeasy Micro kit (QIAGEN) was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 100ng total RNA.
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Mouse Genome 430 2.0 Arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using Affymetrix GeneChip Scanner 3000 (GCS3000).
| | Sample_data_processing | The data were analyzed with Affymetrix Expression Console (version 1.1). The normalization used in RMA is quantile normalization.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Juzoh,,Umemori
| | Sample_contact_email | jumemori@fujita-hu.ac.jp
| | Sample_contact_institute | Fujita Health University
| | Sample_contact_address | 1-98 Kutsukakecho, Dengakugakubo
| | Sample_contact_city | Toyoake
| | Sample_contact_zip/postal_code | 470-1192
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1049nnn/GSM1049780/suppl/GSM1049780_Shn2_DG_06_Mouse430_2_.CEL.gz
| | Sample_series_id | GSE42777
| | Sample_series_id | GSE42778
| | Sample_data_row_count | 45101
| | |
|
GSM1049781 | GPL1261 |
|
Control DG, biological rep4
|
DG of adult control mouse
|
strain/background: (BALB/c x C57BL/6J) F1
genotype: wild-type
tissue: dentate gyrus
age: 36w
|
Shn2_07_DG
Gene expression data from the DG of a control mouse.
(BALB/c x C57BL/6J) F1: obtained by breeding heterozygote mice(+/-) with a C57BL/6J and BALB/cA background.
|
| Sample_geo_accession | GSM1049781
| | Sample_status | Public on Aug 13 2013
| | Sample_submission_date | Dec 06 2012
| | Sample_last_update_date | Aug 13 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | None
| | Sample_growth_protocol_ch1 | None
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA and cleanup by the RNeasy Micro kit (QIAGEN) was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 100ng total RNA.
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Mouse Genome 430 2.0 Arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using Affymetrix GeneChip Scanner 3000 (GCS3000).
| | Sample_data_processing | The data were analyzed with Affymetrix Expression Console (version 1.1). The normalization used in RMA is quantile normalization.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Juzoh,,Umemori
| | Sample_contact_email | jumemori@fujita-hu.ac.jp
| | Sample_contact_institute | Fujita Health University
| | Sample_contact_address | 1-98 Kutsukakecho, Dengakugakubo
| | Sample_contact_city | Toyoake
| | Sample_contact_zip/postal_code | 470-1192
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1049nnn/GSM1049781/suppl/GSM1049781_Shn2_DG_07_Mouse430_2_.CEL.gz
| | Sample_series_id | GSE42777
| | Sample_series_id | GSE42778
| | Sample_data_row_count | 45101
| | |
|
GSM1049782 | GPL1261 |
|
Mutant DG, biological rep4
|
DG of adult Shn-2 mutant mouse
|
strain/background: (BALB/c x C57BL/6J) F1
genotype: Shn-2 mutant
tissue: dentate gyrus
age: 36w
|
Shn2_08_DG
Gene expression data from the DG of a Shn-2 mutant mouse.
(BALB/c x C57BL/6J) F1: obtained by breeding heterozygote mice(+/-) with a C57BL/6J and BALB/cA background.
|
| Sample_geo_accession | GSM1049782
| | Sample_status | Public on Aug 13 2013
| | Sample_submission_date | Dec 06 2012
| | Sample_last_update_date | Aug 13 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | None
| | Sample_growth_protocol_ch1 | None
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA and cleanup by the RNeasy Micro kit (QIAGEN) was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 100ng total RNA.
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Mouse Genome 430 2.0 Arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using Affymetrix GeneChip Scanner 3000 (GCS3000).
| | Sample_data_processing | The data were analyzed with Affymetrix Expression Console (version 1.1). The normalization used in RMA is quantile normalization.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Juzoh,,Umemori
| | Sample_contact_email | jumemori@fujita-hu.ac.jp
| | Sample_contact_institute | Fujita Health University
| | Sample_contact_address | 1-98 Kutsukakecho, Dengakugakubo
| | Sample_contact_city | Toyoake
| | Sample_contact_zip/postal_code | 470-1192
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1049nnn/GSM1049782/suppl/GSM1049782_Shn2_DG_08_Mouse430_2_.CEL.gz
| | Sample_series_id | GSE42777
| | Sample_series_id | GSE42778
| | Sample_data_row_count | 45101
| | |
|
GSM1049783 | GPL1261 |
|
Mutant DG, biological rep5
|
DG of adult Shn-2 mutant mouse
|
strain/background: (BALB/c x C57BL/6J) F1
genotype: Shn-2 mutant
tissue: dentate gyrus
age: 36w
|
Shn2_09_DG
Gene expression data from the DG of a Shn-2 mutant mouse.
(BALB/c x C57BL/6J) F1: obtained by breeding heterozygote mice(+/-) with a C57BL/6J and BALB/cA background.
|
| Sample_geo_accession | GSM1049783
| | Sample_status | Public on Aug 13 2013
| | Sample_submission_date | Dec 06 2012
| | Sample_last_update_date | Aug 13 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | None
| | Sample_growth_protocol_ch1 | None
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA and cleanup by the RNeasy Micro kit (QIAGEN) was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 100ng total RNA.
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Mouse Genome 430 2.0 Arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using Affymetrix GeneChip Scanner 3000 (GCS3000).
| | Sample_data_processing | The data were analyzed with Affymetrix Expression Console (version 1.1). The normalization used in RMA is quantile normalization.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Juzoh,,Umemori
| | Sample_contact_email | jumemori@fujita-hu.ac.jp
| | Sample_contact_institute | Fujita Health University
| | Sample_contact_address | 1-98 Kutsukakecho, Dengakugakubo
| | Sample_contact_city | Toyoake
| | Sample_contact_zip/postal_code | 470-1192
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1049nnn/GSM1049783/suppl/GSM1049783_Shn2_DG_09_Mouse430_2_.CEL.gz
| | Sample_series_id | GSE42777
| | Sample_series_id | GSE42778
| | Sample_data_row_count | 45101
| | |
|
GSM1049784 | GPL1261 |
|
Control DG, biological rep5
|
DG of adult control mouse
|
strain/background: (BALB/c x C57BL/6J) F1
genotype: wild-type
tissue: dentate gyrus
age: 36w
|
Shn2_10_DG
Gene expression data from the DG of a control mouse.
(BALB/c x C57BL/6J) F1: obtained by breeding heterozygote mice(+/-) with a C57BL/6J and BALB/cA background.
|
| Sample_geo_accession | GSM1049784
| | Sample_status | Public on Aug 13 2013
| | Sample_submission_date | Dec 06 2012
| | Sample_last_update_date | Aug 13 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | None
| | Sample_growth_protocol_ch1 | None
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA and cleanup by the RNeasy Micro kit (QIAGEN) was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 100ng total RNA.
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Mouse Genome 430 2.0 Arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using Affymetrix GeneChip Scanner 3000 (GCS3000).
| | Sample_data_processing | The data were analyzed with Affymetrix Expression Console (version 1.1). The normalization used in RMA is quantile normalization.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Juzoh,,Umemori
| | Sample_contact_email | jumemori@fujita-hu.ac.jp
| | Sample_contact_institute | Fujita Health University
| | Sample_contact_address | 1-98 Kutsukakecho, Dengakugakubo
| | Sample_contact_city | Toyoake
| | Sample_contact_zip/postal_code | 470-1192
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1049nnn/GSM1049784/suppl/GSM1049784_Shn2_DG_10_Mouse430_2_.CEL.gz
| | Sample_series_id | GSE42777
| | Sample_series_id | GSE42778
| | Sample_data_row_count | 45101
| | |
|
GSM1049785 | GPL1261 |
|
Control DG, biological rep6
|
DG of adult control mouse
|
strain/background: (BALB/c x C57BL/6J) F1
genotype: wild-type
tissue: dentate gyrus
age: 36w
|
Shn2_11_DG
Gene expression data from the DG of a control mouse.
(BALB/c x C57BL/6J) F1: obtained by breeding heterozygote mice(+/-) with a C57BL/6J and BALB/cA background.
|
| Sample_geo_accession | GSM1049785
| | Sample_status | Public on Aug 13 2013
| | Sample_submission_date | Dec 06 2012
| | Sample_last_update_date | Aug 13 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | None
| | Sample_growth_protocol_ch1 | None
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA and cleanup by the RNeasy Micro kit (QIAGEN) was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 100ng total RNA.
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Mouse Genome 430 2.0 Arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using Affymetrix GeneChip Scanner 3000 (GCS3000).
| | Sample_data_processing | The data were analyzed with Affymetrix Expression Console (version 1.1). The normalization used in RMA is quantile normalization.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Juzoh,,Umemori
| | Sample_contact_email | jumemori@fujita-hu.ac.jp
| | Sample_contact_institute | Fujita Health University
| | Sample_contact_address | 1-98 Kutsukakecho, Dengakugakubo
| | Sample_contact_city | Toyoake
| | Sample_contact_zip/postal_code | 470-1192
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1049nnn/GSM1049785/suppl/GSM1049785_Shn2_DG_11_Mouse430_2_.CEL.gz
| | Sample_series_id | GSE42777
| | Sample_series_id | GSE42778
| | Sample_data_row_count | 45101
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GSM1049786 | GPL1261 |
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Mutant DG, biological rep6
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DG of adult Shn-2 mutant mouse
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strain/background: (BALB/c x C57BL/6J) F1
genotype: Shn-2 mutant
tissue: dentate gyrus
age: 36w
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Shn2_12_DG
Gene expression data from the DG of a Shn-2 mutant mouse.
(BALB/c x C57BL/6J) F1: obtained by breeding heterozygote mice(+/-) with a C57BL/6J and BALB/cA background.
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| Sample_geo_accession | GSM1049786
| | Sample_status | Public on Aug 13 2013
| | Sample_submission_date | Dec 06 2012
| | Sample_last_update_date | Aug 13 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | None
| | Sample_growth_protocol_ch1 | None
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA and cleanup by the RNeasy Micro kit (QIAGEN) was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 100ng total RNA.
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Mouse Genome 430 2.0 Arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using Affymetrix GeneChip Scanner 3000 (GCS3000).
| | Sample_data_processing | The data were analyzed with Affymetrix Expression Console (version 1.1). The normalization used in RMA is quantile normalization.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Juzoh,,Umemori
| | Sample_contact_email | jumemori@fujita-hu.ac.jp
| | Sample_contact_institute | Fujita Health University
| | Sample_contact_address | 1-98 Kutsukakecho, Dengakugakubo
| | Sample_contact_city | Toyoake
| | Sample_contact_zip/postal_code | 470-1192
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1049nnn/GSM1049786/suppl/GSM1049786_Shn2_DG_12_Mouse430_2_.CEL.gz
| | Sample_series_id | GSE42777
| | Sample_series_id | GSE42778
| | Sample_data_row_count | 45101
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