Sample_geo_accession | GSM1053741
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Sample_status | Public on May 31 2013
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Sample_submission_date | Dec 15 2012
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Sample_last_update_date | May 31 2013
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Sample_type | RNA
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Sample_channel_count | 1
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Sample_organism_ch1 | Mus musculus
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Sample_taxid_ch1 | 10090
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Sample_molecule_ch1 | total RNA
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Sample_extract_protocol_ch1 | RNA was purified by PicoPure kit, RNA integrity verified on Agilent Bioanalyzer.
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Sample_label_ch1 | biotin
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Sample_label_protocol_ch1 | total RNA pooled from multiple dissections and multiple mice to make ~100 ng RNA, which was then amplirifed, labeled, and fragmented (by Arctureus RiboAmp HS kit followed by the RNA Amplification and Labeling Kit from Enzo Life Sciences).
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Sample_hyb_protocol | Biotinylated cRNA probes were hybridized to the GeneChips. Post hybridization staining/washing using Affymetrix (manufacturer?s) protocols using the Fluidics Station 450 instrument.
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Sample_scan_protocol | Arrays were scanned with a GeneChip® Scanner 3000 laser confocal slide scanner.
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Sample_data_processing | The seeting for modeling on dChip was Model-based expression and background subtraction was by PM/MM difference, which are the default settings.
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Sample_platform_id | GPL1261
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Sample_contact_name | Jason,C,Mills
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Sample_contact_email | jmills@wustl.edu
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Sample_contact_phone | 314-362-4258
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Sample_contact_department | Gastroenterology, Medicine
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Sample_contact_institute | Washington University
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Sample_contact_address | 660 S. Euclid Avenue, Box 8118
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Sample_contact_city | St. Louis
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Sample_contact_state | MO
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Sample_contact_zip/postal_code | 63110
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Sample_contact_country | USA
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Sample_contact_web_link | http://pathology.wustl.edu/~millslab/
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Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1053nnn/GSM1053741/suppl/GSM1053741_XP_WJ_Neck.CEL.gz
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Sample_series_id | GSE42946
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Sample_data_row_count | 45037
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