Search results for the GEO ID: GSE43017  |
(Click on the check boxes provided under "Select for analysis", to initiate grouping) |
(Once the selection is made, click on "Add groups" in "Make groups for comparison", to make a group. Scroll down) |
|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM1055148 | GPL570 |
|
Healthy volunteer #1
|
CD4+ T lymphocytes_healthy
|
sample group: healthy volunteers
tissue: peripheral blood
cell type: CD4+ T lymphocytes
|
CD4+N1
060807 Normal 1.CEL
|
| Sample_geo_accession | GSM1055148
| | Sample_status | Public on Dec 20 2012
| | Sample_submission_date | Dec 19 2012
| | Sample_last_update_date | Dec 20 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following linear amplification of cRNA with T7 RNA polymerase, the biotinylated cRNA was cleaned with an RNeasy Mini Column Kit, fragmented to 50 to 200 nucleotides, and then hybridized to the Affymetrix Human Genome U133 Plus 2.0 Array.
| | Sample_scan_protocol | GeneChips were scanned using Affymetrics GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | kentarou,,nagai
| | Sample_contact_department | Miyazaki university
| | Sample_contact_institute | biochemistry
| | Sample_contact_address | kihara5200
| | Sample_contact_city | miyazaki city
| | Sample_contact_state | miyazaki
| | Sample_contact_zip/postal_code | 889-
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1055nnn/GSM1055148/suppl/GSM1055148_060807_Normal_1.CEL.gz
| | Sample_series_id | GSE43017
| | Sample_data_row_count | 54675
| | |
|
GSM1055149 | GPL570 |
|
Healthy volunteer #2
|
CD4+ T lymphocytes_healthy
|
sample group: healthy volunteers
tissue: peripheral blood
cell type: CD4+ T lymphocytes
|
CD4+N2
060807 Normal 2.CEL
|
| Sample_geo_accession | GSM1055149
| | Sample_status | Public on Dec 20 2012
| | Sample_submission_date | Dec 19 2012
| | Sample_last_update_date | Dec 20 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following linear amplification of cRNA with T7 RNA polymerase, the biotinylated cRNA was cleaned with an RNeasy Mini Column Kit, fragmented to 50 to 200 nucleotides, and then hybridized to the Affymetrix Human Genome U133 Plus 2.0 Array.
| | Sample_scan_protocol | GeneChips were scanned using Affymetrics GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | kentarou,,nagai
| | Sample_contact_department | Miyazaki university
| | Sample_contact_institute | biochemistry
| | Sample_contact_address | kihara5200
| | Sample_contact_city | miyazaki city
| | Sample_contact_state | miyazaki
| | Sample_contact_zip/postal_code | 889-
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1055nnn/GSM1055149/suppl/GSM1055149_060807_Normal_2.CEL.gz
| | Sample_series_id | GSE43017
| | Sample_data_row_count | 54675
| | |
|
GSM1055150 | GPL570 |
|
Healthy volunteer #3
|
CD4+ T lymphocytes_healthy
|
sample group: healthy volunteers
tissue: peripheral blood
cell type: CD4+ T lymphocytes
|
CD4+N3
060807 Normal 3.CEL
|
| Sample_geo_accession | GSM1055150
| | Sample_status | Public on Dec 20 2012
| | Sample_submission_date | Dec 19 2012
| | Sample_last_update_date | Dec 20 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following linear amplification of cRNA with T7 RNA polymerase, the biotinylated cRNA was cleaned with an RNeasy Mini Column Kit, fragmented to 50 to 200 nucleotides, and then hybridized to the Affymetrix Human Genome U133 Plus 2.0 Array.
| | Sample_scan_protocol | GeneChips were scanned using Affymetrics GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | kentarou,,nagai
| | Sample_contact_department | Miyazaki university
| | Sample_contact_institute | biochemistry
| | Sample_contact_address | kihara5200
| | Sample_contact_city | miyazaki city
| | Sample_contact_state | miyazaki
| | Sample_contact_zip/postal_code | 889-
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1055nnn/GSM1055150/suppl/GSM1055150_060807_Normal_3.CEL.gz
| | Sample_series_id | GSE43017
| | Sample_data_row_count | 54675
| | |
|
GSM1055151 | GPL570 |
|
Healthy volunteer #4
|
CD4+ T lymphocytes_healthy
|
sample group: healthy volunteers
tissue: peripheral blood
cell type: CD4+ T lymphocytes
|
CD4+N4
060807 Normal 4.CEL
|
| Sample_geo_accession | GSM1055151
| | Sample_status | Public on Dec 20 2012
| | Sample_submission_date | Dec 19 2012
| | Sample_last_update_date | Dec 20 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following linear amplification of cRNA with T7 RNA polymerase, the biotinylated cRNA was cleaned with an RNeasy Mini Column Kit, fragmented to 50 to 200 nucleotides, and then hybridized to the Affymetrix Human Genome U133 Plus 2.0 Array.
| | Sample_scan_protocol | GeneChips were scanned using Affymetrics GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | kentarou,,nagai
| | Sample_contact_department | Miyazaki university
| | Sample_contact_institute | biochemistry
| | Sample_contact_address | kihara5200
| | Sample_contact_city | miyazaki city
| | Sample_contact_state | miyazaki
| | Sample_contact_zip/postal_code | 889-
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1055nnn/GSM1055151/suppl/GSM1055151_060807_Normal_4.CEL.gz
| | Sample_series_id | GSE43017
| | Sample_data_row_count | 54675
| | |
|
GSM1055152 | GPL570 |
|
Healthy volunteer #5
|
CD4+ T lymphocytes_healthy
|
sample group: healthy volunteers
tissue: peripheral blood
cell type: CD4+ T lymphocytes
|
CD4+N5
060807 Normal 5.CEL
|
| Sample_geo_accession | GSM1055152
| | Sample_status | Public on Dec 20 2012
| | Sample_submission_date | Dec 19 2012
| | Sample_last_update_date | Dec 20 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following linear amplification of cRNA with T7 RNA polymerase, the biotinylated cRNA was cleaned with an RNeasy Mini Column Kit, fragmented to 50 to 200 nucleotides, and then hybridized to the Affymetrix Human Genome U133 Plus 2.0 Array.
| | Sample_scan_protocol | GeneChips were scanned using Affymetrics GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | kentarou,,nagai
| | Sample_contact_department | Miyazaki university
| | Sample_contact_institute | biochemistry
| | Sample_contact_address | kihara5200
| | Sample_contact_city | miyazaki city
| | Sample_contact_state | miyazaki
| | Sample_contact_zip/postal_code | 889-
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1055nnn/GSM1055152/suppl/GSM1055152_060807_Normal_5.CEL.gz
| | Sample_series_id | GSE43017
| | Sample_data_row_count | 54675
| | |
|
GSM1055153 | GPL570 |
|
Acute-type ATL patient #1
|
ATL cells_acute-type ATL patients
|
sample group: acute-type T-cell leukemia (ATL) patients
tissue: peripheral blood
cell type: Adult T-cell leukemia (ATL) cells
|
Acute1
060807 ATL 3.CEL
|
| Sample_geo_accession | GSM1055153
| | Sample_status | Public on Dec 20 2012
| | Sample_submission_date | Dec 19 2012
| | Sample_last_update_date | Dec 20 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following linear amplification of cRNA with T7 RNA polymerase, the biotinylated cRNA was cleaned with an RNeasy Mini Column Kit, fragmented to 50 to 200 nucleotides, and then hybridized to the Affymetrix Human Genome U133 Plus 2.0 Array.
| | Sample_scan_protocol | GeneChips were scanned using Affymetrics GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | kentarou,,nagai
| | Sample_contact_department | Miyazaki university
| | Sample_contact_institute | biochemistry
| | Sample_contact_address | kihara5200
| | Sample_contact_city | miyazaki city
| | Sample_contact_state | miyazaki
| | Sample_contact_zip/postal_code | 889-
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1055nnn/GSM1055153/suppl/GSM1055153_060807_ATL_3.CEL.gz
| | Sample_series_id | GSE43017
| | Sample_data_row_count | 54675
| | |
|
GSM1055154 | GPL570 |
|
Acute-type ATL patient #2
|
ATL cells_acute-type ATL patients
|
sample group: acute-type T-cell leukemia (ATL) patients
tissue: peripheral blood
cell type: Adult T-cell leukemia (ATL) cells
|
Acute2
ATL 1_061217.CEL
|
| Sample_geo_accession | GSM1055154
| | Sample_status | Public on Dec 20 2012
| | Sample_submission_date | Dec 19 2012
| | Sample_last_update_date | Dec 20 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following linear amplification of cRNA with T7 RNA polymerase, the biotinylated cRNA was cleaned with an RNeasy Mini Column Kit, fragmented to 50 to 200 nucleotides, and then hybridized to the Affymetrix Human Genome U133 Plus 2.0 Array.
| | Sample_scan_protocol | GeneChips were scanned using Affymetrics GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | kentarou,,nagai
| | Sample_contact_department | Miyazaki university
| | Sample_contact_institute | biochemistry
| | Sample_contact_address | kihara5200
| | Sample_contact_city | miyazaki city
| | Sample_contact_state | miyazaki
| | Sample_contact_zip/postal_code | 889-
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1055nnn/GSM1055154/suppl/GSM1055154_ATL_1_061217.CEL.gz
| | Sample_series_id | GSE43017
| | Sample_data_row_count | 54675
| | |
|
GSM1055155 | GPL570 |
|
Acute-type ATL patient #3
|
ATL cells_acute-type ATL patients
|
sample group: acute-type T-cell leukemia (ATL) patients
tissue: peripheral blood
cell type: Adult T-cell leukemia (ATL) cells
|
Acute3
ATL 2_061217.CEL
|
| Sample_geo_accession | GSM1055155
| | Sample_status | Public on Dec 20 2012
| | Sample_submission_date | Dec 19 2012
| | Sample_last_update_date | Dec 20 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following linear amplification of cRNA with T7 RNA polymerase, the biotinylated cRNA was cleaned with an RNeasy Mini Column Kit, fragmented to 50 to 200 nucleotides, and then hybridized to the Affymetrix Human Genome U133 Plus 2.0 Array.
| | Sample_scan_protocol | GeneChips were scanned using Affymetrics GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | kentarou,,nagai
| | Sample_contact_department | Miyazaki university
| | Sample_contact_institute | biochemistry
| | Sample_contact_address | kihara5200
| | Sample_contact_city | miyazaki city
| | Sample_contact_state | miyazaki
| | Sample_contact_zip/postal_code | 889-
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1055nnn/GSM1055155/suppl/GSM1055155_ATL_2_061217.CEL.gz
| | Sample_series_id | GSE43017
| | Sample_data_row_count | 54675
| | |
|
GSM1055156 | GPL570 |
|
Acute-type ATL patient #4
|
ATL cells_acute-type ATL patients
|
sample group: acute-type T-cell leukemia (ATL) patients
tissue: peripheral blood
cell type: Adult T-cell leukemia (ATL) cells
|
Acute4
ATL_145.CEL
|
| Sample_geo_accession | GSM1055156
| | Sample_status | Public on Dec 20 2012
| | Sample_submission_date | Dec 19 2012
| | Sample_last_update_date | Dec 20 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following linear amplification of cRNA with T7 RNA polymerase, the biotinylated cRNA was cleaned with an RNeasy Mini Column Kit, fragmented to 50 to 200 nucleotides, and then hybridized to the Affymetrix Human Genome U133 Plus 2.0 Array.
| | Sample_scan_protocol | GeneChips were scanned using Affymetrics GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | kentarou,,nagai
| | Sample_contact_department | Miyazaki university
| | Sample_contact_institute | biochemistry
| | Sample_contact_address | kihara5200
| | Sample_contact_city | miyazaki city
| | Sample_contact_state | miyazaki
| | Sample_contact_zip/postal_code | 889-
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1055nnn/GSM1055156/suppl/GSM1055156_ATL_145.CEL.gz
| | Sample_series_id | GSE43017
| | Sample_data_row_count | 54675
| | |
|
GSM1055157 | GPL570 |
|
Acute-type ATL patient #5
|
ATL cells_acute-type ATL patients
|
sample group: acute-type T-cell leukemia (ATL) patients
tissue: peripheral blood
cell type: Adult T-cell leukemia (ATL) cells
|
Acute5
ATL_148.CEL
|
| Sample_geo_accession | GSM1055157
| | Sample_status | Public on Dec 20 2012
| | Sample_submission_date | Dec 19 2012
| | Sample_last_update_date | Dec 20 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following linear amplification of cRNA with T7 RNA polymerase, the biotinylated cRNA was cleaned with an RNeasy Mini Column Kit, fragmented to 50 to 200 nucleotides, and then hybridized to the Affymetrix Human Genome U133 Plus 2.0 Array.
| | Sample_scan_protocol | GeneChips were scanned using Affymetrics GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | kentarou,,nagai
| | Sample_contact_department | Miyazaki university
| | Sample_contact_institute | biochemistry
| | Sample_contact_address | kihara5200
| | Sample_contact_city | miyazaki city
| | Sample_contact_state | miyazaki
| | Sample_contact_zip/postal_code | 889-
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1055nnn/GSM1055157/suppl/GSM1055157_ATL_148.CEL.gz
| | Sample_series_id | GSE43017
| | Sample_data_row_count | 54675
| | |
|
GSM1055158 | GPL570 |
|
Acute-type ATL patient #6
|
ATL cells_acute-type ATL patients
|
sample group: acute-type T-cell leukemia (ATL) patients
tissue: peripheral blood
cell type: Adult T-cell leukemia (ATL) cells
|
Acute6
ATL_162.CEL
|
| Sample_geo_accession | GSM1055158
| | Sample_status | Public on Dec 20 2012
| | Sample_submission_date | Dec 19 2012
| | Sample_last_update_date | Dec 20 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following linear amplification of cRNA with T7 RNA polymerase, the biotinylated cRNA was cleaned with an RNeasy Mini Column Kit, fragmented to 50 to 200 nucleotides, and then hybridized to the Affymetrix Human Genome U133 Plus 2.0 Array.
| | Sample_scan_protocol | GeneChips were scanned using Affymetrics GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | kentarou,,nagai
| | Sample_contact_department | Miyazaki university
| | Sample_contact_institute | biochemistry
| | Sample_contact_address | kihara5200
| | Sample_contact_city | miyazaki city
| | Sample_contact_state | miyazaki
| | Sample_contact_zip/postal_code | 889-
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1055nnn/GSM1055158/suppl/GSM1055158_ATL_162.CEL.gz
| | Sample_series_id | GSE43017
| | Sample_data_row_count | 54675
| | |
|
GSM1055159 | GPL570 |
|
Acute-type ATL patient #7
|
ATL cells_acute-type ATL patients
|
sample group: acute-type T-cell leukemia (ATL) patients
tissue: peripheral blood
cell type: Adult T-cell leukemia (ATL) cells
|
Acute7
ATL_163.CEL
|
| Sample_geo_accession | GSM1055159
| | Sample_status | Public on Dec 20 2012
| | Sample_submission_date | Dec 19 2012
| | Sample_last_update_date | Dec 20 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following linear amplification of cRNA with T7 RNA polymerase, the biotinylated cRNA was cleaned with an RNeasy Mini Column Kit, fragmented to 50 to 200 nucleotides, and then hybridized to the Affymetrix Human Genome U133 Plus 2.0 Array.
| | Sample_scan_protocol | GeneChips were scanned using Affymetrics GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | kentarou,,nagai
| | Sample_contact_department | Miyazaki university
| | Sample_contact_institute | biochemistry
| | Sample_contact_address | kihara5200
| | Sample_contact_city | miyazaki city
| | Sample_contact_state | miyazaki
| | Sample_contact_zip/postal_code | 889-
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1055nnn/GSM1055159/suppl/GSM1055159_ATL_163.CEL.gz
| | Sample_series_id | GSE43017
| | Sample_data_row_count | 54675
| | |
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Enter the group name here: |
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