Search results for the GEO ID: GSE43067  |
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GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM1055796 | GPL1261 |
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MLL-AF6 leukemia Z233 BM Replicate 1 of 3
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Whole bone marrow cells from a retroviral mouse model of MLL-AF6
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cell type: bone marrow leukemic cells
disease state: MLL-AF6 leukemia
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Sacrificed terminally ill leukemic mouse
Gene expression data from a MLL-AF6 positive murine leukemic marrow
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| Sample_geo_accession | GSM1055796
| | Sample_status | Public on Apr 03 2013
| | Sample_submission_date | Dec 20 2012
| | Sample_last_update_date | Apr 03 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Cells were not subject to any treatment prior to RNA preparation.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA and Qiagen RNeasy micro kit was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 100 ng total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | According to manufacturer's instructions (Affymetrix)
| | Sample_scan_protocol | According to manufacturer's instructions (Affymetrix)
| | Sample_data_processing | RMA background correction and quantile normalization done with the GenePattern ExpressionFileCreator module (http://www.broad.mit.edu/cancer/software/genepattern/) which uses the Bioconductor implementation of RMA (http://www.bioconductor.org/). This function computes the Robust Multichip Average expression measure described in Irizarry et al Biostatistics (2003).
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Amit,,Sinha
| | Sample_contact_email | amit.sinha@childrens.harvard.edu
| | Sample_contact_phone | 617-582-7579
| | Sample_contact_laboratory | Armstrong Lab
| | Sample_contact_department | Pediatric Oncology
| | Sample_contact_institute | Dana-Farber Cancer Institute
| | Sample_contact_address | 44 Binney St
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02135
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1055nnn/GSM1055796/suppl/GSM1055796_SA2012091324.CEL.gz
| | Sample_series_id | GSE43067
| | Sample_series_id | GSE43069
| | Sample_data_row_count | 45101
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GSM1055797 | GPL1261 |
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MLL-AF6 leukemia Z236 BM Replicate 2 of 3
|
Whole bone marrow cells from a retroviral mouse model of MLL-AF6
|
cell type: bone marrow leukemic cells
disease state: MLL-AF6 leukemia
|
Sacrificed terminally ill leukemic mouse
Gene expression data from a MLL-AF6 positive murine leukemic marrow
|
| Sample_geo_accession | GSM1055797
| | Sample_status | Public on Apr 03 2013
| | Sample_submission_date | Dec 20 2012
| | Sample_last_update_date | Apr 03 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Cells were not subject to any treatment prior to RNA preparation.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA and Qiagen RNeasy micro kit was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 100 ng total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | According to manufacturer's instructions (Affymetrix)
| | Sample_scan_protocol | According to manufacturer's instructions (Affymetrix)
| | Sample_data_processing | RMA background correction and quantile normalization done with the GenePattern ExpressionFileCreator module (http://www.broad.mit.edu/cancer/software/genepattern/) which uses the Bioconductor implementation of RMA (http://www.bioconductor.org/). This function computes the Robust Multichip Average expression measure described in Irizarry et al Biostatistics (2003).
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Amit,,Sinha
| | Sample_contact_email | amit.sinha@childrens.harvard.edu
| | Sample_contact_phone | 617-582-7579
| | Sample_contact_laboratory | Armstrong Lab
| | Sample_contact_department | Pediatric Oncology
| | Sample_contact_institute | Dana-Farber Cancer Institute
| | Sample_contact_address | 44 Binney St
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02135
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1055nnn/GSM1055797/suppl/GSM1055797_SA2012091325.CEL.gz
| | Sample_series_id | GSE43067
| | Sample_series_id | GSE43069
| | Sample_data_row_count | 45101
| | |
|
GSM1055798 | GPL1261 |
|
MLL-AF6 leukemia Z237 BM Replicate 3 of 3
|
Whole bone marrow cells from a retroviral mouse model of MLL-AF6
|
cell type: bone marrow leukemic cells
disease state: MLL-AF6 leukemia
|
Sacrificed terminally ill leukemic mouse
Gene expression data from a MLL-AF6 positive murine leukemic marrow
|
| Sample_geo_accession | GSM1055798
| | Sample_status | Public on Apr 03 2013
| | Sample_submission_date | Dec 20 2012
| | Sample_last_update_date | Apr 03 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Cells were not subject to any treatment prior to RNA preparation.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA and Qiagen RNeasy micro kit was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 100 ng total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | According to manufacturer's instructions (Affymetrix)
| | Sample_scan_protocol | According to manufacturer's instructions (Affymetrix)
| | Sample_data_processing | RMA background correction and quantile normalization done with the GenePattern ExpressionFileCreator module (http://www.broad.mit.edu/cancer/software/genepattern/) which uses the Bioconductor implementation of RMA (http://www.bioconductor.org/). This function computes the Robust Multichip Average expression measure described in Irizarry et al Biostatistics (2003).
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Amit,,Sinha
| | Sample_contact_email | amit.sinha@childrens.harvard.edu
| | Sample_contact_phone | 617-582-7579
| | Sample_contact_laboratory | Armstrong Lab
| | Sample_contact_department | Pediatric Oncology
| | Sample_contact_institute | Dana-Farber Cancer Institute
| | Sample_contact_address | 44 Binney St
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02135
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1055nnn/GSM1055798/suppl/GSM1055798_SA2012091326.CEL.gz
| | Sample_series_id | GSE43067
| | Sample_series_id | GSE43069
| | Sample_data_row_count | 45101
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