Search results for the GEO ID: GSE43114 |
(Click on the check boxes provided under "Select for analysis", to initiate grouping) |
(Once the selection is made, click on "Add groups" in "Make groups for comparison", to make a group. Scroll down) |
|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM1056879 | GPL570 |
|
Glioma, clinical trial RT v RT+PCV 15 47.CEL
|
Glioma, clinical trial RT v RT+PCV
|
tissue: glioma
sample: 15
igs: 9
tcga classification: P
tissue type: FF
cimp: CIMP+
1p19q loh: LOH
egfr: wt
mgmt: meth
trt: RT/PCV
ss (y): 7.68767123287671
event: alive
age: 42
Sex: M
original diagnosis: AOD
review diagnosis: AOD
experiment: pt 3
|
Abbreviations: IGS: intrinsic glioma subtype; Trt: treatment; SS: survival in years; C: classical; P: proneural; M: mesenchymal; N:neural
|
Sample_geo_accession | GSM1056879
| Sample_status | Public on Feb 01 2013
| Sample_submission_date | Dec 21 2012
| Sample_last_update_date | Feb 01 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | cDNA synthesis and cRNA labeling was done using the alternative protocol for one-cycle cDNA synthesis.Biotin-labeled cRNA was generated using the ENZO Highyield RNA transcript labeling kit (ENZO Life Sciences, Inc., Farmingdale, NY). Affymetrix (Santa Clara, CA)
| Sample_hyb_protocol | HG U133-plus2 microarrays were hybridized overnight with 15 μg biotin-labeled cRNA
| Sample_scan_protocol | Genechip scanner
| Sample_data_processing | RMA
| Sample_platform_id | GPL570
| Sample_contact_name | Pim,,French
| Sample_contact_email | p.french@erasmusmc.nl
| Sample_contact_phone | +31 10 70443 33
| Sample_contact_laboratory | Neurooncology
| Sample_contact_department | Neurology
| Sample_contact_institute | Erasmus MC
| Sample_contact_address | Dr Molewaterplein 50
| Sample_contact_city | Rotterdam
| Sample_contact_zip/postal_code | 2040CA
| Sample_contact_country | Netherlands
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1056nnn/GSM1056879/suppl/GSM1056879_15_47.CEL.gz
| Sample_series_id | GSE43114
| Sample_series_id | GSE43388
| Sample_data_row_count | 54675
| |
|
GSM1056880 | GPL570 |
|
Glioma, clinical trial RT v RT+PCV 80 29.CEL
|
Glioma, clinical trial RT v RT+PCV
|
tissue: glioma
sample: 80
igs: 18
tcga classification: C
tissue type: FF
idhmut: wt
1p19q loh: no loss
egfr: amp
mgmt: meth
trt: RT/PCV
ss (y): 2.1041095890411
event: deceased
age: 51
Sex: M
original diagnosis: AOA
review diagnosis: AOA
experiment: pt 3
|
Abbreviations: IGS: intrinsic glioma subtype; Trt: treatment; SS: survival in years; C: classical; P: proneural; M: mesenchymal; N:neural
|
Sample_geo_accession | GSM1056880
| Sample_status | Public on Feb 01 2013
| Sample_submission_date | Dec 21 2012
| Sample_last_update_date | Feb 01 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | cDNA synthesis and cRNA labeling was done using the alternative protocol for one-cycle cDNA synthesis.Biotin-labeled cRNA was generated using the ENZO Highyield RNA transcript labeling kit (ENZO Life Sciences, Inc., Farmingdale, NY). Affymetrix (Santa Clara, CA)
| Sample_hyb_protocol | HG U133-plus2 microarrays were hybridized overnight with 15 μg biotin-labeled cRNA
| Sample_scan_protocol | Genechip scanner
| Sample_data_processing | RMA
| Sample_platform_id | GPL570
| Sample_contact_name | Pim,,French
| Sample_contact_email | p.french@erasmusmc.nl
| Sample_contact_phone | +31 10 70443 33
| Sample_contact_laboratory | Neurooncology
| Sample_contact_department | Neurology
| Sample_contact_institute | Erasmus MC
| Sample_contact_address | Dr Molewaterplein 50
| Sample_contact_city | Rotterdam
| Sample_contact_zip/postal_code | 2040CA
| Sample_contact_country | Netherlands
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1056nnn/GSM1056880/suppl/GSM1056880_80_29.CEL.gz
| Sample_series_id | GSE43114
| Sample_series_id | GSE43388
| Sample_data_row_count | 54675
| |
|
GSM1056881 | GPL570 |
|
Glioma, clinical trial RT v RT+PCV 94 17.CEL
|
Glioma, clinical trial RT v RT+PCV
|
tissue: glioma
sample: 94
igs: 16
tcga classification: P
tissue type: FF
idhmut: wt
1p19q loh: no loss
egfr: wt
mgmt: unmeth
trt: RT
ss (y): 0.961643835616438
event: deceased
age: 47
Sex: M
original diagnosis: AOD
review diagnosis: AOD
experiment: pt 3
|
Abbreviations: IGS: intrinsic glioma subtype; Trt: treatment; SS: survival in years; C: classical; P: proneural; M: mesenchymal; N:neural
|
Sample_geo_accession | GSM1056881
| Sample_status | Public on Feb 01 2013
| Sample_submission_date | Dec 21 2012
| Sample_last_update_date | Feb 01 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | cDNA synthesis and cRNA labeling was done using the alternative protocol for one-cycle cDNA synthesis.Biotin-labeled cRNA was generated using the ENZO Highyield RNA transcript labeling kit (ENZO Life Sciences, Inc., Farmingdale, NY). Affymetrix (Santa Clara, CA)
| Sample_hyb_protocol | HG U133-plus2 microarrays were hybridized overnight with 15 μg biotin-labeled cRNA
| Sample_scan_protocol | Genechip scanner
| Sample_data_processing | RMA
| Sample_platform_id | GPL570
| Sample_contact_name | Pim,,French
| Sample_contact_email | p.french@erasmusmc.nl
| Sample_contact_phone | +31 10 70443 33
| Sample_contact_laboratory | Neurooncology
| Sample_contact_department | Neurology
| Sample_contact_institute | Erasmus MC
| Sample_contact_address | Dr Molewaterplein 50
| Sample_contact_city | Rotterdam
| Sample_contact_zip/postal_code | 2040CA
| Sample_contact_country | Netherlands
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1056nnn/GSM1056881/suppl/GSM1056881_94_17.CEL.gz
| Sample_series_id | GSE43114
| Sample_series_id | GSE43388
| Sample_data_row_count | 54675
| |
|
GSM1056882 | GPL570 |
|
Glioma, clinical trial RT v RT+PCV 99 15.CEL
|
Glioma, clinical trial RT v RT+PCV
|
tissue: glioma
sample: 99
igs: 18
tcga classification: C
tissue type: FF
cimp: CIMP-
idhmut: wt
1p19q loh: no loss
egfr: wt
mgmt: meth
trt: RT
ss (y): 3.71780821917808
event: deceased
age: 19
Sex: F
original diagnosis: AOD
review diagnosis: AOD
experiment: pt 3
|
Abbreviations: IGS: intrinsic glioma subtype; Trt: treatment; SS: survival in years; C: classical; P: proneural; M: mesenchymal; N:neural
|
Sample_geo_accession | GSM1056882
| Sample_status | Public on Feb 01 2013
| Sample_submission_date | Dec 21 2012
| Sample_last_update_date | Feb 01 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | cDNA synthesis and cRNA labeling was done using the alternative protocol for one-cycle cDNA synthesis.Biotin-labeled cRNA was generated using the ENZO Highyield RNA transcript labeling kit (ENZO Life Sciences, Inc., Farmingdale, NY). Affymetrix (Santa Clara, CA)
| Sample_hyb_protocol | HG U133-plus2 microarrays were hybridized overnight with 15 μg biotin-labeled cRNA
| Sample_scan_protocol | Genechip scanner
| Sample_data_processing | RMA
| Sample_platform_id | GPL570
| Sample_contact_name | Pim,,French
| Sample_contact_email | p.french@erasmusmc.nl
| Sample_contact_phone | +31 10 70443 33
| Sample_contact_laboratory | Neurooncology
| Sample_contact_department | Neurology
| Sample_contact_institute | Erasmus MC
| Sample_contact_address | Dr Molewaterplein 50
| Sample_contact_city | Rotterdam
| Sample_contact_zip/postal_code | 2040CA
| Sample_contact_country | Netherlands
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1056nnn/GSM1056882/suppl/GSM1056882_99_15.CEL.gz
| Sample_series_id | GSE43114
| Sample_series_id | GSE43388
| Sample_data_row_count | 54675
| |
|
GSM1056883 | GPL570 |
|
Glioma, clinical trial RT v RT+PCV 171 36.CEL
|
Glioma, clinical trial RT v RT+PCV
|
tissue: glioma
sample: 171
igs: 22
tcga classification: P
tissue type: FF
idhmut: wt
1p19q loh: no loss
egfr: wt
mgmt: unmeth
trt: RT
ss (y): 2.37260273972603
event: deceased
age: 20
Sex: F
original diagnosis: AOA
review diagnosis: AOA
experiment: pt 3
|
Abbreviations: IGS: intrinsic glioma subtype; Trt: treatment; SS: survival in years; C: classical; P: proneural; M: mesenchymal; N:neural
|
Sample_geo_accession | GSM1056883
| Sample_status | Public on Feb 01 2013
| Sample_submission_date | Dec 21 2012
| Sample_last_update_date | Feb 01 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | cDNA synthesis and cRNA labeling was done using the alternative protocol for one-cycle cDNA synthesis.Biotin-labeled cRNA was generated using the ENZO Highyield RNA transcript labeling kit (ENZO Life Sciences, Inc., Farmingdale, NY). Affymetrix (Santa Clara, CA)
| Sample_hyb_protocol | HG U133-plus2 microarrays were hybridized overnight with 15 μg biotin-labeled cRNA
| Sample_scan_protocol | Genechip scanner
| Sample_data_processing | RMA
| Sample_platform_id | GPL570
| Sample_contact_name | Pim,,French
| Sample_contact_email | p.french@erasmusmc.nl
| Sample_contact_phone | +31 10 70443 33
| Sample_contact_laboratory | Neurooncology
| Sample_contact_department | Neurology
| Sample_contact_institute | Erasmus MC
| Sample_contact_address | Dr Molewaterplein 50
| Sample_contact_city | Rotterdam
| Sample_contact_zip/postal_code | 2040CA
| Sample_contact_country | Netherlands
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1056nnn/GSM1056883/suppl/GSM1056883_171_36.CEL.gz
| Sample_series_id | GSE43114
| Sample_series_id | GSE43388
| Sample_data_row_count | 54675
| |
|
GSM1056884 | GPL570 |
|
Glioma, clinical trial RT v RT+PCV 192 22.CEL
|
Glioma, clinical trial RT v RT+PCV
|
tissue: glioma
sample: 192
igs: 18
tcga classification: C
tissue type: FF
idhmut: wt
1p19q loh: no loss
egfr: amp
mgmt: unmeth
trt: RT/PCV
ss (y): 1.35342465753425
event: deceased
age: 55
Sex: M
original diagnosis: AOD
review diagnosis: AOD
experiment: pt 3
|
Abbreviations: IGS: intrinsic glioma subtype; Trt: treatment; SS: survival in years; C: classical; P: proneural; M: mesenchymal; N:neural
|
Sample_geo_accession | GSM1056884
| Sample_status | Public on Feb 01 2013
| Sample_submission_date | Dec 21 2012
| Sample_last_update_date | Feb 01 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | cDNA synthesis and cRNA labeling was done using the alternative protocol for one-cycle cDNA synthesis.Biotin-labeled cRNA was generated using the ENZO Highyield RNA transcript labeling kit (ENZO Life Sciences, Inc., Farmingdale, NY). Affymetrix (Santa Clara, CA)
| Sample_hyb_protocol | HG U133-plus2 microarrays were hybridized overnight with 15 μg biotin-labeled cRNA
| Sample_scan_protocol | Genechip scanner
| Sample_data_processing | RMA
| Sample_platform_id | GPL570
| Sample_contact_name | Pim,,French
| Sample_contact_email | p.french@erasmusmc.nl
| Sample_contact_phone | +31 10 70443 33
| Sample_contact_laboratory | Neurooncology
| Sample_contact_department | Neurology
| Sample_contact_institute | Erasmus MC
| Sample_contact_address | Dr Molewaterplein 50
| Sample_contact_city | Rotterdam
| Sample_contact_zip/postal_code | 2040CA
| Sample_contact_country | Netherlands
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1056nnn/GSM1056884/suppl/GSM1056884_192_22.CEL.gz
| Sample_series_id | GSE43114
| Sample_series_id | GSE43388
| Sample_data_row_count | 54675
| |
|
|
|
Make groups for comparisons |
(2 groups will be compared at a time) |
|
Select GSMs and click on "Add groups" |
Enter the group name here: |
|
|
|