Search results for the GEO ID: GSE43115 |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM1056885 | GPL570 |
|
Glioma-EORTC26951 A1488-01.CEL
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Glioma, clinical trial RT v RT+PCV
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tissue: glioma
sample: 143
igs: 22
tcga classification: P
tissue type: FF
1p19q loh: no loss
trt: RT
ss (y): 0.621917808219178
event: deceased
age: 66
Sex: M
original diagnosis: AOA
review diagnosis: AOD
experiment: pt 4
|
Abbreviations: IGS: intrinsic glioma subtype; Trt: treatment; SS: survival in years; C: classical; P: proneural; M: mesenchymal; N:neural
|
Sample_geo_accession | GSM1056885
| Sample_status | Public on Feb 01 2013
| Sample_submission_date | Dec 21 2012
| Sample_last_update_date | Feb 01 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Qiagen Rneasy
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | labelling was performed according to the Affymetrix (Santa Clara, CA) Labelling Assay manual
| Sample_hyb_protocol | Hybridization was performed according to the Affymetrix (Santa Clara, CA) Labelling Assay manual
| Sample_scan_protocol | Genechip scanner 3000 7G
| Sample_data_processing | RMA
| Sample_platform_id | GPL570
| Sample_contact_name | Pim,,French
| Sample_contact_email | p.french@erasmusmc.nl
| Sample_contact_phone | +31 10 70443 33
| Sample_contact_laboratory | Neurooncology
| Sample_contact_department | Neurology
| Sample_contact_institute | Erasmus MC
| Sample_contact_address | Dr Molewaterplein 50
| Sample_contact_city | Rotterdam
| Sample_contact_zip/postal_code | 2040CA
| Sample_contact_country | Netherlands
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1056nnn/GSM1056885/suppl/GSM1056885_177_A1488-01.CEL.gz
| Sample_series_id | GSE43115
| Sample_series_id | GSE43388
| Sample_data_row_count | 54675
| |
|
GSM1056886 | GPL570 |
|
Glioma-EORTC26951 A1488-02.CEL
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Glioma, clinical trial RT v RT+PCV
|
tissue: glioma
sample: 208
igs: 18
tcga classification: C
tissue type: FF
1p19q loh: no loss
egfr: wt
trt: RT/PCV
ss (y): 0.657534246575342
event: deceased
age: 53
Sex: M
original diagnosis: AOD
review diagnosis: AOD
experiment: pt 4
|
Abbreviations: IGS: intrinsic glioma subtype; Trt: treatment; SS: survival in years; C: classical; P: proneural; M: mesenchymal; N:neural
|
Sample_geo_accession | GSM1056886
| Sample_status | Public on Feb 01 2013
| Sample_submission_date | Dec 21 2012
| Sample_last_update_date | Feb 01 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Qiagen Rneasy
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | labelling was performed according to the Affymetrix (Santa Clara, CA) Labelling Assay manual
| Sample_hyb_protocol | Hybridization was performed according to the Affymetrix (Santa Clara, CA) Labelling Assay manual
| Sample_scan_protocol | Genechip scanner 3000 7G
| Sample_data_processing | RMA
| Sample_platform_id | GPL570
| Sample_contact_name | Pim,,French
| Sample_contact_email | p.french@erasmusmc.nl
| Sample_contact_phone | +31 10 70443 33
| Sample_contact_laboratory | Neurooncology
| Sample_contact_department | Neurology
| Sample_contact_institute | Erasmus MC
| Sample_contact_address | Dr Molewaterplein 50
| Sample_contact_city | Rotterdam
| Sample_contact_zip/postal_code | 2040CA
| Sample_contact_country | Netherlands
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1056nnn/GSM1056886/suppl/GSM1056886_208_A1488-02_2.CEL.gz
| Sample_series_id | GSE43115
| Sample_series_id | GSE43388
| Sample_data_row_count | 54675
| |
|
GSM1056887 | GPL570 |
|
Glioma-EORTC26951 A1488-03.CEL
|
Glioma, clinical trial RT v RT+PCV
|
tissue: glioma
sample: 217
igs: 22
tcga classification: N
tissue type: FF
idhmut: wt
1p19q loh: no loss
egfr: wt
mgmt: unmeth
trt: RT/PCV
ss (y): 0.301369863013699
event: deceased
age: 18
Sex: F
original diagnosis: AOD
review diagnosis: AOD
experiment: pt 4
|
Abbreviations: IGS: intrinsic glioma subtype; Trt: treatment; SS: survival in years; C: classical; P: proneural; M: mesenchymal; N:neural
|
Sample_geo_accession | GSM1056887
| Sample_status | Public on Feb 01 2013
| Sample_submission_date | Dec 21 2012
| Sample_last_update_date | Feb 01 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Qiagen Rneasy
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | labelling was performed according to the Affymetrix (Santa Clara, CA) Labelling Assay manual
| Sample_hyb_protocol | Hybridization was performed according to the Affymetrix (Santa Clara, CA) Labelling Assay manual
| Sample_scan_protocol | Genechip scanner 3000 7G
| Sample_data_processing | RMA
| Sample_platform_id | GPL570
| Sample_contact_name | Pim,,French
| Sample_contact_email | p.french@erasmusmc.nl
| Sample_contact_phone | +31 10 70443 33
| Sample_contact_laboratory | Neurooncology
| Sample_contact_department | Neurology
| Sample_contact_institute | Erasmus MC
| Sample_contact_address | Dr Molewaterplein 50
| Sample_contact_city | Rotterdam
| Sample_contact_zip/postal_code | 2040CA
| Sample_contact_country | Netherlands
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1056nnn/GSM1056887/suppl/GSM1056887_217_A1488-03.CEL.gz
| Sample_series_id | GSE43115
| Sample_series_id | GSE43388
| Sample_data_row_count | 54675
| |
|
GSM1056888 | GPL570 |
|
Glioma-EORTC26951 A1488-04.CEL
|
Glioma, clinical trial RT v RT+PCV
|
tissue: glioma
sample: 61
igs: 23
tcga classification: M
tissue type: FF
1p19q loh: no loss
trt: RT/PCV
ss (y): 0.69041095890411
event: deceased
age: 47
Sex: F
original diagnosis: AOD
review diagnosis: AOD
experiment: pt 4
|
Abbreviations: IGS: intrinsic glioma subtype; Trt: treatment; SS: survival in years; C: classical; P: proneural; M: mesenchymal; N:neural
|
Sample_geo_accession | GSM1056888
| Sample_status | Public on Feb 01 2013
| Sample_submission_date | Dec 21 2012
| Sample_last_update_date | Feb 01 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Qiagen Rneasy
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | labelling was performed according to the Affymetrix (Santa Clara, CA) Labelling Assay manual
| Sample_hyb_protocol | Hybridization was performed according to the Affymetrix (Santa Clara, CA) Labelling Assay manual
| Sample_scan_protocol | Genechip scanner 3000 7G
| Sample_data_processing | RMA
| Sample_platform_id | GPL570
| Sample_contact_name | Pim,,French
| Sample_contact_email | p.french@erasmusmc.nl
| Sample_contact_phone | +31 10 70443 33
| Sample_contact_laboratory | Neurooncology
| Sample_contact_department | Neurology
| Sample_contact_institute | Erasmus MC
| Sample_contact_address | Dr Molewaterplein 50
| Sample_contact_city | Rotterdam
| Sample_contact_zip/postal_code | 2040CA
| Sample_contact_country | Netherlands
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1056nnn/GSM1056888/suppl/GSM1056888_182_A1488-04.CEL.gz
| Sample_series_id | GSE43115
| Sample_series_id | GSE43388
| Sample_data_row_count | 54675
| |
|
GSM1056889 | GPL570 |
|
Glioma-EORTC26951 A1488-05.CEL
|
Glioma, clinical trial RT v RT+PCV
|
tissue: glioma
sample: 284
igs: 18
tcga classification: C
tissue type: FF
trt: RT
ss (y): 2.3972602739726
event: deceased
age: 53
Sex: M
original diagnosis: AOA
review diagnosis: GBM/AA
experiment: pt 4
|
Abbreviations: IGS: intrinsic glioma subtype; Trt: treatment; SS: survival in years; C: classical; P: proneural; M: mesenchymal; N:neural
|
Sample_geo_accession | GSM1056889
| Sample_status | Public on Feb 01 2013
| Sample_submission_date | Dec 21 2012
| Sample_last_update_date | Feb 01 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Qiagen Rneasy
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | labelling was performed according to the Affymetrix (Santa Clara, CA) Labelling Assay manual
| Sample_hyb_protocol | Hybridization was performed according to the Affymetrix (Santa Clara, CA) Labelling Assay manual
| Sample_scan_protocol | Genechip scanner 3000 7G
| Sample_data_processing | RMA
| Sample_platform_id | GPL570
| Sample_contact_name | Pim,,French
| Sample_contact_email | p.french@erasmusmc.nl
| Sample_contact_phone | +31 10 70443 33
| Sample_contact_laboratory | Neurooncology
| Sample_contact_department | Neurology
| Sample_contact_institute | Erasmus MC
| Sample_contact_address | Dr Molewaterplein 50
| Sample_contact_city | Rotterdam
| Sample_contact_zip/postal_code | 2040CA
| Sample_contact_country | Netherlands
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1056nnn/GSM1056889/suppl/GSM1056889_284_A1488-05.CEL.gz
| Sample_series_id | GSE43115
| Sample_series_id | GSE43388
| Sample_data_row_count | 54675
| |
|
GSM1056890 | GPL570 |
|
Glioma-EORTC26951 A1488-06.CEL
|
Glioma, clinical trial RT v RT+PCV
|
tissue: glioma
sample: 196
igs: 18
tcga classification: C
tissue type: FF
idhmut: wt
1p19q loh: no loss
egfr: wt
mgmt: unmeth
trt: RT
ss (y): 0.778082191780822
event: deceased
age: 66
Sex: M
original diagnosis: AOA
review diagnosis: AOA
experiment: pt 4
|
Abbreviations: IGS: intrinsic glioma subtype; Trt: treatment; SS: survival in years; C: classical; P: proneural; M: mesenchymal; N:neural
|
Sample_geo_accession | GSM1056890
| Sample_status | Public on Feb 01 2013
| Sample_submission_date | Dec 21 2012
| Sample_last_update_date | Feb 01 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Qiagen Rneasy
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | labelling was performed according to the Affymetrix (Santa Clara, CA) Labelling Assay manual
| Sample_hyb_protocol | Hybridization was performed according to the Affymetrix (Santa Clara, CA) Labelling Assay manual
| Sample_scan_protocol | Genechip scanner 3000 7G
| Sample_data_processing | RMA
| Sample_platform_id | GPL570
| Sample_contact_name | Pim,,French
| Sample_contact_email | p.french@erasmusmc.nl
| Sample_contact_phone | +31 10 70443 33
| Sample_contact_laboratory | Neurooncology
| Sample_contact_department | Neurology
| Sample_contact_institute | Erasmus MC
| Sample_contact_address | Dr Molewaterplein 50
| Sample_contact_city | Rotterdam
| Sample_contact_zip/postal_code | 2040CA
| Sample_contact_country | Netherlands
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1056nnn/GSM1056890/suppl/GSM1056890_196_A1488-06.CEL.gz
| Sample_series_id | GSE43115
| Sample_series_id | GSE43388
| Sample_data_row_count | 54675
| |
|
GSM1056891 | GPL570 |
|
Glioma-EORTC26951 A1488-07.CEL
|
Glioma, clinical trial RT v RT+PCV
|
tissue: glioma
sample: 239
igs: 9
tcga classification: P
tissue type: FFPE
cimp: CIMP+
trt: RT
ss (y): 4.79452054794521
event: deceased
age: 41
Sex: M
original diagnosis: AOD
review diagnosis: AOD
experiment: pt 4
|
Abbreviations: IGS: intrinsic glioma subtype; Trt: treatment; SS: survival in years; C: classical; P: proneural; M: mesenchymal; N:neural
|
Sample_geo_accession | GSM1056891
| Sample_status | Public on Feb 01 2013
| Sample_submission_date | Dec 21 2012
| Sample_last_update_date | Feb 01 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Qiagen Rneasy
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | labelling was performed according to the Affymetrix (Santa Clara, CA) Labelling Assay manual
| Sample_hyb_protocol | Hybridization was performed according to the Affymetrix (Santa Clara, CA) Labelling Assay manual
| Sample_scan_protocol | Genechip scanner 3000 7G
| Sample_data_processing | RMA
| Sample_platform_id | GPL570
| Sample_contact_name | Pim,,French
| Sample_contact_email | p.french@erasmusmc.nl
| Sample_contact_phone | +31 10 70443 33
| Sample_contact_laboratory | Neurooncology
| Sample_contact_department | Neurology
| Sample_contact_institute | Erasmus MC
| Sample_contact_address | Dr Molewaterplein 50
| Sample_contact_city | Rotterdam
| Sample_contact_zip/postal_code | 2040CA
| Sample_contact_country | Netherlands
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1056nnn/GSM1056891/suppl/GSM1056891_239_A1488-07.CEL.gz
| Sample_series_id | GSE43115
| Sample_series_id | GSE43388
| Sample_data_row_count | 54675
| |
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