Search results for the GEO ID: GSE43177 |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM1057943 | GPL570 |
|
peripheral blood T-cells Control10 [mRNA]
|
peripheral blood T-cell
|
group: Control
|
gene expression data from T-cell
|
Sample_geo_accession | GSM1057943
| Sample_status | Public on Jan 22 2013
| Sample_submission_date | Dec 28 2012
| Sample_last_update_date | Jan 22 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Cells were snap frozen in -80 C
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was prepared using Chomczynski's method (Anal Biochem 162, 156-9 (1987))
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 3 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation,15 ug of cRNA were hybridized for 16 hr at 45C on Human U133 Plus 2.0 arrays. Arrays were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | After hybridisation (according to the Minimum Information About a Microarray Experiment guideline, the arrays were scanned using an Affymetrix confocal laser scanner (Affymetrix, GeneArray scanner GCS3000) and visualised using GeneChip Operating Software (GCOS, Affymetrix).
| Sample_data_processing | The raw expression signals were preprocessed following the method of Probe Logarithmic Intensity Error (PLIER) based on perfect match only (pm-only) calculation (Affymetrix).The robust quantile method was applied to get normalized expression values.
| Sample_platform_id | GPL570
| Sample_contact_name | Intawat,,Nookaew
| Sample_contact_email | intawat@chalmers.se
| Sample_contact_department | Department of Chemical and Biological Engineering
| Sample_contact_institute | Chalmers University of Technology
| Sample_contact_address | Kemivägen 10
| Sample_contact_city | Göteborg
| Sample_contact_zip/postal_code | SE-412 96
| Sample_contact_country | Sweden
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1057nnn/GSM1057943/suppl/GSM1057943_C10Blood_HG-U133_Plus_2_.CEL.gz
| Sample_series_id | GSE43177
| Sample_series_id | GSE43179
| Sample_data_row_count | 54675
| |
|
GSM1057944 | GPL570 |
|
peripheral blood T-cells Control1 [mRNA]
|
peripheral blood T-cell
|
group: Control
|
gene expression data from T-cell
|
Sample_geo_accession | GSM1057944
| Sample_status | Public on Jan 22 2013
| Sample_submission_date | Dec 28 2012
| Sample_last_update_date | Jan 22 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Cells were snap frozen in -80 C
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was prepared using Chomczynski's method (Anal Biochem 162, 156-9 (1987))
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 3 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation,15 ug of cRNA were hybridized for 16 hr at 45C on Human U133 Plus 2.0 arrays. Arrays were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | After hybridisation (according to the Minimum Information About a Microarray Experiment guideline, the arrays were scanned using an Affymetrix confocal laser scanner (Affymetrix, GeneArray scanner GCS3000) and visualised using GeneChip Operating Software (GCOS, Affymetrix).
| Sample_data_processing | The raw expression signals were preprocessed following the method of Probe Logarithmic Intensity Error (PLIER) based on perfect match only (pm-only) calculation (Affymetrix).The robust quantile method was applied to get normalized expression values.
| Sample_platform_id | GPL570
| Sample_contact_name | Intawat,,Nookaew
| Sample_contact_email | intawat@chalmers.se
| Sample_contact_department | Department of Chemical and Biological Engineering
| Sample_contact_institute | Chalmers University of Technology
| Sample_contact_address | Kemivägen 10
| Sample_contact_city | Göteborg
| Sample_contact_zip/postal_code | SE-412 96
| Sample_contact_country | Sweden
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1057nnn/GSM1057944/suppl/GSM1057944_C1blood_HG-U133_Plus_2_.CEL.gz
| Sample_series_id | GSE43177
| Sample_series_id | GSE43179
| Sample_data_row_count | 54675
| |
|
GSM1057945 | GPL570 |
|
peripheral blood T-cells Control2 [mRNA]
|
peripheral blood T-cell
|
group: Control
|
gene expression data from T-cell
|
Sample_geo_accession | GSM1057945
| Sample_status | Public on Jan 22 2013
| Sample_submission_date | Dec 28 2012
| Sample_last_update_date | Jan 22 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Cells were snap frozen in -80 C
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was prepared using Chomczynski's method (Anal Biochem 162, 156-9 (1987))
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 3 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation,15 ug of cRNA were hybridized for 16 hr at 45C on Human U133 Plus 2.0 arrays. Arrays were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | After hybridisation (according to the Minimum Information About a Microarray Experiment guideline, the arrays were scanned using an Affymetrix confocal laser scanner (Affymetrix, GeneArray scanner GCS3000) and visualised using GeneChip Operating Software (GCOS, Affymetrix).
| Sample_data_processing | The raw expression signals were preprocessed following the method of Probe Logarithmic Intensity Error (PLIER) based on perfect match only (pm-only) calculation (Affymetrix).The robust quantile method was applied to get normalized expression values.
| Sample_platform_id | GPL570
| Sample_contact_name | Intawat,,Nookaew
| Sample_contact_email | intawat@chalmers.se
| Sample_contact_department | Department of Chemical and Biological Engineering
| Sample_contact_institute | Chalmers University of Technology
| Sample_contact_address | Kemivägen 10
| Sample_contact_city | Göteborg
| Sample_contact_zip/postal_code | SE-412 96
| Sample_contact_country | Sweden
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1057nnn/GSM1057945/suppl/GSM1057945_C2Blood2_HG-U133_Plus_2_.CEL.gz
| Sample_series_id | GSE43177
| Sample_series_id | GSE43179
| Sample_data_row_count | 54675
| |
|
GSM1057946 | GPL570 |
|
peripheral blood T-cells Control3 [mRNA]
|
peripheral blood T-cell
|
group: Control
|
gene expression data from T-cell
|
Sample_geo_accession | GSM1057946
| Sample_status | Public on Jan 22 2013
| Sample_submission_date | Dec 28 2012
| Sample_last_update_date | Jan 22 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Cells were snap frozen in -80 C
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was prepared using Chomczynski's method (Anal Biochem 162, 156-9 (1987))
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 3 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation,15 ug of cRNA were hybridized for 16 hr at 45C on Human U133 Plus 2.0 arrays. Arrays were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | After hybridisation (according to the Minimum Information About a Microarray Experiment guideline, the arrays were scanned using an Affymetrix confocal laser scanner (Affymetrix, GeneArray scanner GCS3000) and visualised using GeneChip Operating Software (GCOS, Affymetrix).
| Sample_data_processing | The raw expression signals were preprocessed following the method of Probe Logarithmic Intensity Error (PLIER) based on perfect match only (pm-only) calculation (Affymetrix).The robust quantile method was applied to get normalized expression values.
| Sample_platform_id | GPL570
| Sample_contact_name | Intawat,,Nookaew
| Sample_contact_email | intawat@chalmers.se
| Sample_contact_department | Department of Chemical and Biological Engineering
| Sample_contact_institute | Chalmers University of Technology
| Sample_contact_address | Kemivägen 10
| Sample_contact_city | Göteborg
| Sample_contact_zip/postal_code | SE-412 96
| Sample_contact_country | Sweden
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1057nnn/GSM1057946/suppl/GSM1057946_C3blood_HG-U133_Plus_2_.CEL.gz
| Sample_series_id | GSE43177
| Sample_series_id | GSE43179
| Sample_data_row_count | 54675
| |
|
GSM1057947 | GPL570 |
|
peripheral blood T-cells Control4 [mRNA]
|
peripheral blood T-cell
|
group: Control
|
gene expression data from T-cell
|
Sample_geo_accession | GSM1057947
| Sample_status | Public on Jan 22 2013
| Sample_submission_date | Dec 28 2012
| Sample_last_update_date | Jan 22 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Cells were snap frozen in -80 C
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was prepared using Chomczynski's method (Anal Biochem 162, 156-9 (1987))
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 3 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation,15 ug of cRNA were hybridized for 16 hr at 45C on Human U133 Plus 2.0 arrays. Arrays were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | After hybridisation (according to the Minimum Information About a Microarray Experiment guideline, the arrays were scanned using an Affymetrix confocal laser scanner (Affymetrix, GeneArray scanner GCS3000) and visualised using GeneChip Operating Software (GCOS, Affymetrix).
| Sample_data_processing | The raw expression signals were preprocessed following the method of Probe Logarithmic Intensity Error (PLIER) based on perfect match only (pm-only) calculation (Affymetrix).The robust quantile method was applied to get normalized expression values.
| Sample_platform_id | GPL570
| Sample_contact_name | Intawat,,Nookaew
| Sample_contact_email | intawat@chalmers.se
| Sample_contact_department | Department of Chemical and Biological Engineering
| Sample_contact_institute | Chalmers University of Technology
| Sample_contact_address | Kemivägen 10
| Sample_contact_city | Göteborg
| Sample_contact_zip/postal_code | SE-412 96
| Sample_contact_country | Sweden
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1057nnn/GSM1057947/suppl/GSM1057947_C4blood_HG-U133_Plus_2_.CEL.gz
| Sample_series_id | GSE43177
| Sample_series_id | GSE43179
| Sample_data_row_count | 54675
| |
|
GSM1057948 | GPL570 |
|
peripheral blood T-cells Control5 [mRNA]
|
peripheral blood T-cell
|
group: Control
|
gene expression data from T-cell
|
Sample_geo_accession | GSM1057948
| Sample_status | Public on Jan 22 2013
| Sample_submission_date | Dec 28 2012
| Sample_last_update_date | Jan 22 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Cells were snap frozen in -80 C
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was prepared using Chomczynski's method (Anal Biochem 162, 156-9 (1987))
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 3 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation,15 ug of cRNA were hybridized for 16 hr at 45C on Human U133 Plus 2.0 arrays. Arrays were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | After hybridisation (according to the Minimum Information About a Microarray Experiment guideline, the arrays were scanned using an Affymetrix confocal laser scanner (Affymetrix, GeneArray scanner GCS3000) and visualised using GeneChip Operating Software (GCOS, Affymetrix).
| Sample_data_processing | The raw expression signals were preprocessed following the method of Probe Logarithmic Intensity Error (PLIER) based on perfect match only (pm-only) calculation (Affymetrix).The robust quantile method was applied to get normalized expression values.
| Sample_platform_id | GPL570
| Sample_contact_name | Intawat,,Nookaew
| Sample_contact_email | intawat@chalmers.se
| Sample_contact_department | Department of Chemical and Biological Engineering
| Sample_contact_institute | Chalmers University of Technology
| Sample_contact_address | Kemivägen 10
| Sample_contact_city | Göteborg
| Sample_contact_zip/postal_code | SE-412 96
| Sample_contact_country | Sweden
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1057nnn/GSM1057948/suppl/GSM1057948_C5blood_HG-U133_Plus_2_.CEL.gz
| Sample_series_id | GSE43177
| Sample_series_id | GSE43179
| Sample_data_row_count | 54675
| |
|
GSM1057949 | GPL570 |
|
peripheral blood T-cells Control6 [mRNA]
|
peripheral blood T-cell
|
group: Control
|
gene expression data from T-cell
|
Sample_geo_accession | GSM1057949
| Sample_status | Public on Jan 22 2013
| Sample_submission_date | Dec 28 2012
| Sample_last_update_date | Jan 22 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Cells were snap frozen in -80 C
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was prepared using Chomczynski's method (Anal Biochem 162, 156-9 (1987))
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 3 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation,15 ug of cRNA were hybridized for 16 hr at 45C on Human U133 Plus 2.0 arrays. Arrays were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | After hybridisation (according to the Minimum Information About a Microarray Experiment guideline, the arrays were scanned using an Affymetrix confocal laser scanner (Affymetrix, GeneArray scanner GCS3000) and visualised using GeneChip Operating Software (GCOS, Affymetrix).
| Sample_data_processing | The raw expression signals were preprocessed following the method of Probe Logarithmic Intensity Error (PLIER) based on perfect match only (pm-only) calculation (Affymetrix).The robust quantile method was applied to get normalized expression values.
| Sample_platform_id | GPL570
| Sample_contact_name | Intawat,,Nookaew
| Sample_contact_email | intawat@chalmers.se
| Sample_contact_department | Department of Chemical and Biological Engineering
| Sample_contact_institute | Chalmers University of Technology
| Sample_contact_address | Kemivägen 10
| Sample_contact_city | Göteborg
| Sample_contact_zip/postal_code | SE-412 96
| Sample_contact_country | Sweden
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1057nnn/GSM1057949/suppl/GSM1057949_C6blood_HG-U133_Plus_2_.CEL.gz
| Sample_series_id | GSE43177
| Sample_series_id | GSE43179
| Sample_data_row_count | 54675
| |
|
GSM1057950 | GPL570 |
|
peripheral blood T-cells Control7 [mRNA]
|
peripheral blood T-cell
|
group: Control
|
gene expression data from T-cell
|
Sample_geo_accession | GSM1057950
| Sample_status | Public on Jan 22 2013
| Sample_submission_date | Dec 28 2012
| Sample_last_update_date | Jan 22 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Cells were snap frozen in -80 C
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was prepared using Chomczynski's method (Anal Biochem 162, 156-9 (1987))
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 3 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation,15 ug of cRNA were hybridized for 16 hr at 45C on Human U133 Plus 2.0 arrays. Arrays were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | After hybridisation (according to the Minimum Information About a Microarray Experiment guideline, the arrays were scanned using an Affymetrix confocal laser scanner (Affymetrix, GeneArray scanner GCS3000) and visualised using GeneChip Operating Software (GCOS, Affymetrix).
| Sample_data_processing | The raw expression signals were preprocessed following the method of Probe Logarithmic Intensity Error (PLIER) based on perfect match only (pm-only) calculation (Affymetrix).The robust quantile method was applied to get normalized expression values.
| Sample_platform_id | GPL570
| Sample_contact_name | Intawat,,Nookaew
| Sample_contact_email | intawat@chalmers.se
| Sample_contact_department | Department of Chemical and Biological Engineering
| Sample_contact_institute | Chalmers University of Technology
| Sample_contact_address | Kemivägen 10
| Sample_contact_city | Göteborg
| Sample_contact_zip/postal_code | SE-412 96
| Sample_contact_country | Sweden
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1057nnn/GSM1057950/suppl/GSM1057950_C7Blood_HG-U133_Plus_2_.CEL.gz
| Sample_series_id | GSE43177
| Sample_series_id | GSE43179
| Sample_data_row_count | 54675
| |
|
GSM1057951 | GPL570 |
|
peripheral blood T-cells Control8 [mRNA]
|
peripheral blood T-cell
|
group: Control
|
gene expression data from T-cell
|
Sample_geo_accession | GSM1057951
| Sample_status | Public on Jan 22 2013
| Sample_submission_date | Dec 28 2012
| Sample_last_update_date | Jan 22 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Cells were snap frozen in -80 C
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was prepared using Chomczynski's method (Anal Biochem 162, 156-9 (1987))
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 3 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation,15 ug of cRNA were hybridized for 16 hr at 45C on Human U133 Plus 2.0 arrays. Arrays were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | After hybridisation (according to the Minimum Information About a Microarray Experiment guideline, the arrays were scanned using an Affymetrix confocal laser scanner (Affymetrix, GeneArray scanner GCS3000) and visualised using GeneChip Operating Software (GCOS, Affymetrix).
| Sample_data_processing | The raw expression signals were preprocessed following the method of Probe Logarithmic Intensity Error (PLIER) based on perfect match only (pm-only) calculation (Affymetrix).The robust quantile method was applied to get normalized expression values.
| Sample_platform_id | GPL570
| Sample_contact_name | Intawat,,Nookaew
| Sample_contact_email | intawat@chalmers.se
| Sample_contact_department | Department of Chemical and Biological Engineering
| Sample_contact_institute | Chalmers University of Technology
| Sample_contact_address | Kemivägen 10
| Sample_contact_city | Göteborg
| Sample_contact_zip/postal_code | SE-412 96
| Sample_contact_country | Sweden
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1057nnn/GSM1057951/suppl/GSM1057951_C8Blood_HG-U133_Plus_2_.CEL.gz
| Sample_series_id | GSE43177
| Sample_series_id | GSE43179
| Sample_data_row_count | 54675
| |
|
GSM1057952 | GPL570 |
|
peripheral blood T-cells Control9 [mRNA]
|
peripheral blood T-cell
|
group: Control
|
gene expression data from T-cell
|
Sample_geo_accession | GSM1057952
| Sample_status | Public on Jan 22 2013
| Sample_submission_date | Dec 28 2012
| Sample_last_update_date | Jan 22 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Cells were snap frozen in -80 C
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was prepared using Chomczynski's method (Anal Biochem 162, 156-9 (1987))
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 3 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation,15 ug of cRNA were hybridized for 16 hr at 45C on Human U133 Plus 2.0 arrays. Arrays were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | After hybridisation (according to the Minimum Information About a Microarray Experiment guideline, the arrays were scanned using an Affymetrix confocal laser scanner (Affymetrix, GeneArray scanner GCS3000) and visualised using GeneChip Operating Software (GCOS, Affymetrix).
| Sample_data_processing | The raw expression signals were preprocessed following the method of Probe Logarithmic Intensity Error (PLIER) based on perfect match only (pm-only) calculation (Affymetrix).The robust quantile method was applied to get normalized expression values.
| Sample_platform_id | GPL570
| Sample_contact_name | Intawat,,Nookaew
| Sample_contact_email | intawat@chalmers.se
| Sample_contact_department | Department of Chemical and Biological Engineering
| Sample_contact_institute | Chalmers University of Technology
| Sample_contact_address | Kemivägen 10
| Sample_contact_city | Göteborg
| Sample_contact_zip/postal_code | SE-412 96
| Sample_contact_country | Sweden
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1057nnn/GSM1057952/suppl/GSM1057952_C9Blood_HG-U133_Plus_2_.CEL.gz
| Sample_series_id | GSE43177
| Sample_series_id | GSE43179
| Sample_data_row_count | 54675
| |
|
GSM1057953 | GPL570 |
|
peripheral blood T-cells Patient1 [mRNA]
|
peripheral blood T-cell
|
group: ITP patient
|
gene expression data from T-cell
|
Sample_geo_accession | GSM1057953
| Sample_status | Public on Jan 22 2013
| Sample_submission_date | Dec 28 2012
| Sample_last_update_date | Jan 22 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Cells were snap frozen in -80 C
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was prepared using Chomczynski's method (Anal Biochem 162, 156-9 (1987))
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 3 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation,15 ug of cRNA were hybridized for 16 hr at 45C on Human U133 Plus 2.0 arrays. Arrays were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | After hybridisation (according to the Minimum Information About a Microarray Experiment guideline, the arrays were scanned using an Affymetrix confocal laser scanner (Affymetrix, GeneArray scanner GCS3000) and visualised using GeneChip Operating Software (GCOS, Affymetrix).
| Sample_data_processing | The raw expression signals were preprocessed following the method of Probe Logarithmic Intensity Error (PLIER) based on perfect match only (pm-only) calculation (Affymetrix).The robust quantile method was applied to get normalized expression values.
| Sample_platform_id | GPL570
| Sample_contact_name | Intawat,,Nookaew
| Sample_contact_email | intawat@chalmers.se
| Sample_contact_department | Department of Chemical and Biological Engineering
| Sample_contact_institute | Chalmers University of Technology
| Sample_contact_address | Kemivägen 10
| Sample_contact_city | Göteborg
| Sample_contact_zip/postal_code | SE-412 96
| Sample_contact_country | Sweden
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1057nnn/GSM1057953/suppl/GSM1057953_P1blood_HG-U133_Plus_2_.CEL.gz
| Sample_series_id | GSE43177
| Sample_series_id | GSE43179
| Sample_data_row_count | 54675
| |
|
GSM1057954 | GPL570 |
|
peripheral blood T-cells Patient2 [mRNA]
|
peripheral blood T-cell
|
group: ITP patient
|
gene expression data from T-cell
|
Sample_geo_accession | GSM1057954
| Sample_status | Public on Jan 22 2013
| Sample_submission_date | Dec 28 2012
| Sample_last_update_date | Jan 22 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Cells were snap frozen in -80 C
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was prepared using Chomczynski's method (Anal Biochem 162, 156-9 (1987))
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 3 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation,15 ug of cRNA were hybridized for 16 hr at 45C on Human U133 Plus 2.0 arrays. Arrays were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | After hybridisation (according to the Minimum Information About a Microarray Experiment guideline, the arrays were scanned using an Affymetrix confocal laser scanner (Affymetrix, GeneArray scanner GCS3000) and visualised using GeneChip Operating Software (GCOS, Affymetrix).
| Sample_data_processing | The raw expression signals were preprocessed following the method of Probe Logarithmic Intensity Error (PLIER) based on perfect match only (pm-only) calculation (Affymetrix).The robust quantile method was applied to get normalized expression values.
| Sample_platform_id | GPL570
| Sample_contact_name | Intawat,,Nookaew
| Sample_contact_email | intawat@chalmers.se
| Sample_contact_department | Department of Chemical and Biological Engineering
| Sample_contact_institute | Chalmers University of Technology
| Sample_contact_address | Kemivägen 10
| Sample_contact_city | Göteborg
| Sample_contact_zip/postal_code | SE-412 96
| Sample_contact_country | Sweden
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1057nnn/GSM1057954/suppl/GSM1057954_P2blood_HG-U133_Plus_2_.CEL.gz
| Sample_series_id | GSE43177
| Sample_series_id | GSE43179
| Sample_data_row_count | 54675
| |
|
GSM1057955 | GPL570 |
|
peripheral blood T-cells Patient3 [mRNA]
|
peripheral blood T-cell
|
group: ITP patient
|
gene expression data from T-cell
|
Sample_geo_accession | GSM1057955
| Sample_status | Public on Jan 22 2013
| Sample_submission_date | Dec 28 2012
| Sample_last_update_date | Jan 22 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Cells were snap frozen in -80 C
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was prepared using Chomczynski's method (Anal Biochem 162, 156-9 (1987))
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 3 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation,15 ug of cRNA were hybridized for 16 hr at 45C on Human U133 Plus 2.0 arrays. Arrays were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | After hybridisation (according to the Minimum Information About a Microarray Experiment guideline, the arrays were scanned using an Affymetrix confocal laser scanner (Affymetrix, GeneArray scanner GCS3000) and visualised using GeneChip Operating Software (GCOS, Affymetrix).
| Sample_data_processing | The raw expression signals were preprocessed following the method of Probe Logarithmic Intensity Error (PLIER) based on perfect match only (pm-only) calculation (Affymetrix).The robust quantile method was applied to get normalized expression values.
| Sample_platform_id | GPL570
| Sample_contact_name | Intawat,,Nookaew
| Sample_contact_email | intawat@chalmers.se
| Sample_contact_department | Department of Chemical and Biological Engineering
| Sample_contact_institute | Chalmers University of Technology
| Sample_contact_address | Kemivägen 10
| Sample_contact_city | Göteborg
| Sample_contact_zip/postal_code | SE-412 96
| Sample_contact_country | Sweden
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1057nnn/GSM1057955/suppl/GSM1057955_P3blood_HG-U133_Plus_2_.CEL.gz
| Sample_series_id | GSE43177
| Sample_series_id | GSE43179
| Sample_data_row_count | 54675
| |
|
GSM1057956 | GPL570 |
|
peripheral blood T-cells Patient4 [mRNA]
|
peripheral blood T-cell
|
group: ITP patient
|
gene expression data from T-cell
|
Sample_geo_accession | GSM1057956
| Sample_status | Public on Jan 22 2013
| Sample_submission_date | Dec 28 2012
| Sample_last_update_date | Jan 22 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Cells were snap frozen in -80 C
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was prepared using Chomczynski's method (Anal Biochem 162, 156-9 (1987))
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 3 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation,15 ug of cRNA were hybridized for 16 hr at 45C on Human U133 Plus 2.0 arrays. Arrays were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | After hybridisation (according to the Minimum Information About a Microarray Experiment guideline, the arrays were scanned using an Affymetrix confocal laser scanner (Affymetrix, GeneArray scanner GCS3000) and visualised using GeneChip Operating Software (GCOS, Affymetrix).
| Sample_data_processing | The raw expression signals were preprocessed following the method of Probe Logarithmic Intensity Error (PLIER) based on perfect match only (pm-only) calculation (Affymetrix).The robust quantile method was applied to get normalized expression values.
| Sample_platform_id | GPL570
| Sample_contact_name | Intawat,,Nookaew
| Sample_contact_email | intawat@chalmers.se
| Sample_contact_department | Department of Chemical and Biological Engineering
| Sample_contact_institute | Chalmers University of Technology
| Sample_contact_address | Kemivägen 10
| Sample_contact_city | Göteborg
| Sample_contact_zip/postal_code | SE-412 96
| Sample_contact_country | Sweden
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1057nnn/GSM1057956/suppl/GSM1057956_P4blood_HG-U133_Plus_2_.CEL.gz
| Sample_series_id | GSE43177
| Sample_series_id | GSE43179
| Sample_data_row_count | 54675
| |
|
GSM1057957 | GPL570 |
|
peripheral blood T-cells Patient5 [mRNA]
|
peripheral blood T-cell
|
group: ITP patient
|
gene expression data from T-cell
|
Sample_geo_accession | GSM1057957
| Sample_status | Public on Jan 22 2013
| Sample_submission_date | Dec 28 2012
| Sample_last_update_date | Jan 22 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Cells were snap frozen in -80 C
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was prepared using Chomczynski's method (Anal Biochem 162, 156-9 (1987))
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 3 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation,15 ug of cRNA were hybridized for 16 hr at 45C on Human U133 Plus 2.0 arrays. Arrays were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | After hybridisation (according to the Minimum Information About a Microarray Experiment guideline, the arrays were scanned using an Affymetrix confocal laser scanner (Affymetrix, GeneArray scanner GCS3000) and visualised using GeneChip Operating Software (GCOS, Affymetrix).
| Sample_data_processing | The raw expression signals were preprocessed following the method of Probe Logarithmic Intensity Error (PLIER) based on perfect match only (pm-only) calculation (Affymetrix).The robust quantile method was applied to get normalized expression values.
| Sample_platform_id | GPL570
| Sample_contact_name | Intawat,,Nookaew
| Sample_contact_email | intawat@chalmers.se
| Sample_contact_department | Department of Chemical and Biological Engineering
| Sample_contact_institute | Chalmers University of Technology
| Sample_contact_address | Kemivägen 10
| Sample_contact_city | Göteborg
| Sample_contact_zip/postal_code | SE-412 96
| Sample_contact_country | Sweden
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1057nnn/GSM1057957/suppl/GSM1057957_P5blood_HG-U133_Plus_2_.CEL.gz
| Sample_series_id | GSE43177
| Sample_series_id | GSE43179
| Sample_data_row_count | 54675
| |
|
GSM1057958 | GPL570 |
|
peripheral blood T-cells Patient6 [mRNA]
|
peripheral blood T-cell
|
group: ITP patient
|
gene expression data from T-cell
|
Sample_geo_accession | GSM1057958
| Sample_status | Public on Jan 22 2013
| Sample_submission_date | Dec 28 2012
| Sample_last_update_date | Jan 22 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Cells were snap frozen in -80 C
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was prepared using Chomczynski's method (Anal Biochem 162, 156-9 (1987))
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 3 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation,15 ug of cRNA were hybridized for 16 hr at 45C on Human U133 Plus 2.0 arrays. Arrays were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | After hybridisation (according to the Minimum Information About a Microarray Experiment guideline, the arrays were scanned using an Affymetrix confocal laser scanner (Affymetrix, GeneArray scanner GCS3000) and visualised using GeneChip Operating Software (GCOS, Affymetrix).
| Sample_data_processing | The raw expression signals were preprocessed following the method of Probe Logarithmic Intensity Error (PLIER) based on perfect match only (pm-only) calculation (Affymetrix).The robust quantile method was applied to get normalized expression values.
| Sample_platform_id | GPL570
| Sample_contact_name | Intawat,,Nookaew
| Sample_contact_email | intawat@chalmers.se
| Sample_contact_department | Department of Chemical and Biological Engineering
| Sample_contact_institute | Chalmers University of Technology
| Sample_contact_address | Kemivägen 10
| Sample_contact_city | Göteborg
| Sample_contact_zip/postal_code | SE-412 96
| Sample_contact_country | Sweden
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1057nnn/GSM1057958/suppl/GSM1057958_P6blood_HG-U133_Plus_2_.CEL.gz
| Sample_series_id | GSE43177
| Sample_series_id | GSE43179
| Sample_data_row_count | 54675
| |
|
GSM1057959 | GPL570 |
|
peripheral blood T-cells Patient7 [mRNA]
|
peripheral blood T-cell
|
group: ITP patient
|
gene expression data from T-cell
|
Sample_geo_accession | GSM1057959
| Sample_status | Public on Jan 22 2013
| Sample_submission_date | Dec 28 2012
| Sample_last_update_date | Jan 22 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Cells were snap frozen in -80 C
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was prepared using Chomczynski's method (Anal Biochem 162, 156-9 (1987))
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 3 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation,15 ug of cRNA were hybridized for 16 hr at 45C on Human U133 Plus 2.0 arrays. Arrays were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | After hybridisation (according to the Minimum Information About a Microarray Experiment guideline, the arrays were scanned using an Affymetrix confocal laser scanner (Affymetrix, GeneArray scanner GCS3000) and visualised using GeneChip Operating Software (GCOS, Affymetrix).
| Sample_data_processing | The raw expression signals were preprocessed following the method of Probe Logarithmic Intensity Error (PLIER) based on perfect match only (pm-only) calculation (Affymetrix).The robust quantile method was applied to get normalized expression values.
| Sample_platform_id | GPL570
| Sample_contact_name | Intawat,,Nookaew
| Sample_contact_email | intawat@chalmers.se
| Sample_contact_department | Department of Chemical and Biological Engineering
| Sample_contact_institute | Chalmers University of Technology
| Sample_contact_address | Kemivägen 10
| Sample_contact_city | Göteborg
| Sample_contact_zip/postal_code | SE-412 96
| Sample_contact_country | Sweden
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1057nnn/GSM1057959/suppl/GSM1057959_P7Blood_HG-U133_Plus_2_.CEL.gz
| Sample_series_id | GSE43177
| Sample_series_id | GSE43179
| Sample_data_row_count | 54675
| |
|
GSM1057960 | GPL570 |
|
peripheral blood T-cells Patient8 [mRNA]
|
peripheral blood T-cell
|
group: ITP patient
|
gene expression data from T-cell
|
Sample_geo_accession | GSM1057960
| Sample_status | Public on Jan 22 2013
| Sample_submission_date | Dec 28 2012
| Sample_last_update_date | Jan 22 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Cells were snap frozen in -80 C
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was prepared using Chomczynski's method (Anal Biochem 162, 156-9 (1987))
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 3 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation,15 ug of cRNA were hybridized for 16 hr at 45C on Human U133 Plus 2.0 arrays. Arrays were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | After hybridisation (according to the Minimum Information About a Microarray Experiment guideline, the arrays were scanned using an Affymetrix confocal laser scanner (Affymetrix, GeneArray scanner GCS3000) and visualised using GeneChip Operating Software (GCOS, Affymetrix).
| Sample_data_processing | The raw expression signals were preprocessed following the method of Probe Logarithmic Intensity Error (PLIER) based on perfect match only (pm-only) calculation (Affymetrix).The robust quantile method was applied to get normalized expression values.
| Sample_platform_id | GPL570
| Sample_contact_name | Intawat,,Nookaew
| Sample_contact_email | intawat@chalmers.se
| Sample_contact_department | Department of Chemical and Biological Engineering
| Sample_contact_institute | Chalmers University of Technology
| Sample_contact_address | Kemivägen 10
| Sample_contact_city | Göteborg
| Sample_contact_zip/postal_code | SE-412 96
| Sample_contact_country | Sweden
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1057nnn/GSM1057960/suppl/GSM1057960_P8Blood_HG-U133_Plus_2_.CEL.gz
| Sample_series_id | GSE43177
| Sample_series_id | GSE43179
| Sample_data_row_count | 54675
| |
|
GSM1057961 | GPL570 |
|
peripheral blood T-cells Patient9 [mRNA]
|
peripheral blood T-cell
|
group: ITP patient
|
gene expression data from T-cell
|
Sample_geo_accession | GSM1057961
| Sample_status | Public on Jan 22 2013
| Sample_submission_date | Dec 28 2012
| Sample_last_update_date | Jan 22 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Cells were snap frozen in -80 C
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was prepared using Chomczynski's method (Anal Biochem 162, 156-9 (1987))
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 3 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation,15 ug of cRNA were hybridized for 16 hr at 45C on Human U133 Plus 2.0 arrays. Arrays were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | After hybridisation (according to the Minimum Information About a Microarray Experiment guideline, the arrays were scanned using an Affymetrix confocal laser scanner (Affymetrix, GeneArray scanner GCS3000) and visualised using GeneChip Operating Software (GCOS, Affymetrix).
| Sample_data_processing | The raw expression signals were preprocessed following the method of Probe Logarithmic Intensity Error (PLIER) based on perfect match only (pm-only) calculation (Affymetrix).The robust quantile method was applied to get normalized expression values.
| Sample_platform_id | GPL570
| Sample_contact_name | Intawat,,Nookaew
| Sample_contact_email | intawat@chalmers.se
| Sample_contact_department | Department of Chemical and Biological Engineering
| Sample_contact_institute | Chalmers University of Technology
| Sample_contact_address | Kemivägen 10
| Sample_contact_city | Göteborg
| Sample_contact_zip/postal_code | SE-412 96
| Sample_contact_country | Sweden
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1057nnn/GSM1057961/suppl/GSM1057961_P9Blood_HG-U133_Plus_2_.CEL.gz
| Sample_series_id | GSE43177
| Sample_series_id | GSE43179
| Sample_data_row_count | 54675
| |
|
|
|
Make groups for comparisons |
(2 groups will be compared at a time) |
|
Select GSMs and click on "Add groups" |
Enter the group name here: |
|
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