Search results for the GEO ID: GSE43413  |
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GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM1062225 | GPL1355 |
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embryo of WT, biological rep1
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WT rat telencephalon at E11.5
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tissue: telencephalon
genotype: wild type rat
age: E11.5
genetic background: Sprague-Dawley
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| Sample_geo_accession | GSM1062225
| | Sample_status | Public on Jan 11 2013
| | Sample_submission_date | Jan 10 2013
| | Sample_last_update_date | Jan 18 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | Rat telencephalon at E11.5 were disscted under the stereomicroscope. Selected tissues were rinsed with PBS and placed on ice in the TRIZOL Reagent (Invitrogen).
| | Sample_growth_protocol_ch1 | The midday of the vaginal plug was designated as embryonic day 0.5 (E0.5).
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | TRIZOL extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA.
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45℃ on Affymetrix GeneChip Rat Genome 230 2.0 Array (GPL1355). Washing and staining were performed after hybridization under Affymetrix fluidics station protocol.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed with the GC content-adjusted robust-multi-array (GC-RMA) algorithm using the R statistical software with Bioconductor packages as normalization method.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Takako,,Kikkawa
| | Sample_contact_institute | Tohoku University Graduate School of Medicine
| | Sample_contact_address | 2-1, Seiryo-machi, Aoba-ku
| | Sample_contact_city | Sendai
| | Sample_contact_state | Miyagi
| | Sample_contact_zip/postal_code | 980-8575
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1062nnn/GSM1062225/suppl/GSM1062225_Fukuzaki_WT1.CEL.gz
| | Sample_series_id | GSE43413
| | Sample_data_row_count | 31099
| | |
|
GSM1062226 | GPL1355 |
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embryo of WT, biological rep2
|
WT rat telencephalon at E11.5
|
tissue: telencephalon
genotype: wild type rat
age: E11.5
genetic background: Sprague-Dawley
|
|
| Sample_geo_accession | GSM1062226
| | Sample_status | Public on Jan 11 2013
| | Sample_submission_date | Jan 10 2013
| | Sample_last_update_date | Jan 18 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | Rat telencephalon at E11.5 were disscted under the stereomicroscope. Selected tissues were rinsed with PBS and placed on ice in the TRIZOL Reagent (Invitrogen).
| | Sample_growth_protocol_ch1 | The midday of the vaginal plug was designated as embryonic day 0.5 (E0.5).
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | TRIZOL extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA.
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45℃ on Affymetrix GeneChip Rat Genome 230 2.0 Array (GPL1355). Washing and staining were performed after hybridization under Affymetrix fluidics station protocol.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed with the GC content-adjusted robust-multi-array (GC-RMA) algorithm using the R statistical software with Bioconductor packages as normalization method.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Takako,,Kikkawa
| | Sample_contact_institute | Tohoku University Graduate School of Medicine
| | Sample_contact_address | 2-1, Seiryo-machi, Aoba-ku
| | Sample_contact_city | Sendai
| | Sample_contact_state | Miyagi
| | Sample_contact_zip/postal_code | 980-8575
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1062nnn/GSM1062226/suppl/GSM1062226_Fukuzaki_WT2.CEL.gz
| | Sample_series_id | GSE43413
| | Sample_data_row_count | 31099
| | |
|
GSM1062227 | GPL1355 |
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embryo of Pax6 mutant, biological rep1
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Pax6 mutant rat (rSey2/rSey2) telencephalon at E11.5
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tissue: telencephalon
genotype: Pax6 mutant rat (rSey2/rSey2)
age: E11.5
genetic background: Sprague-Dawley
|
|
| Sample_geo_accession | GSM1062227
| | Sample_status | Public on Jan 11 2013
| | Sample_submission_date | Jan 10 2013
| | Sample_last_update_date | Jan 18 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | Rat telencephalon at E11.5 were disscted under the stereomicroscope. Selected tissues were rinsed with PBS and placed on ice in the TRIZOL Reagent (Invitrogen).
| | Sample_growth_protocol_ch1 | The midday of the vaginal plug was designated as embryonic day 0.5 (E0.5).
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | TRIZOL extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA.
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45℃ on Affymetrix GeneChip Rat Genome 230 2.0 Array (GPL1355). Washing and staining were performed after hybridization under Affymetrix fluidics station protocol.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed with the GC content-adjusted robust-multi-array (GC-RMA) algorithm using the R statistical software with Bioconductor packages as normalization method.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Takako,,Kikkawa
| | Sample_contact_institute | Tohoku University Graduate School of Medicine
| | Sample_contact_address | 2-1, Seiryo-machi, Aoba-ku
| | Sample_contact_city | Sendai
| | Sample_contact_state | Miyagi
| | Sample_contact_zip/postal_code | 980-8575
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1062nnn/GSM1062227/suppl/GSM1062227_Fukuzaki_mut1.CEL.gz
| | Sample_series_id | GSE43413
| | Sample_data_row_count | 31099
| | |
|
GSM1062228 | GPL1355 |
|
embryo of Pax6 mutant, biological rep2
|
Pax6 mutant rat (rSey2/rSey2) telencephalon at E11.5
|
tissue: telencephalon
genotype: Pax6 mutant rat (rSey2/rSey2)
age: E11.5
genetic background: Sprague-Dawley
|
|
| Sample_geo_accession | GSM1062228
| | Sample_status | Public on Jan 11 2013
| | Sample_submission_date | Jan 10 2013
| | Sample_last_update_date | Jan 18 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | Rat telencephalon at E11.5 were disscted under the stereomicroscope. Selected tissues were rinsed with PBS and placed on ice in the TRIZOL Reagent (Invitrogen).
| | Sample_growth_protocol_ch1 | The midday of the vaginal plug was designated as embryonic day 0.5 (E0.5).
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | TRIZOL extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA.
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45℃ on Affymetrix GeneChip Rat Genome 230 2.0 Array (GPL1355). Washing and staining were performed after hybridization under Affymetrix fluidics station protocol.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed with the GC content-adjusted robust-multi-array (GC-RMA) algorithm using the R statistical software with Bioconductor packages as normalization method.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Takako,,Kikkawa
| | Sample_contact_institute | Tohoku University Graduate School of Medicine
| | Sample_contact_address | 2-1, Seiryo-machi, Aoba-ku
| | Sample_contact_city | Sendai
| | Sample_contact_state | Miyagi
| | Sample_contact_zip/postal_code | 980-8575
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1062nnn/GSM1062228/suppl/GSM1062228_Fukuzaki_mut2.CEL.gz
| | Sample_series_id | GSE43413
| | Sample_data_row_count | 31099
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