Search results for the GEO ID: GSE43502  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM1064460 | GPL570 |
|
C01-0512-T0787
|
TNBC patient with residual disease
|
disease state: Triple-negative breast cancer (TNBC)
tissue: breast
prognosis: no recurrence
age (years): 49
menopausal status: POST
|
Gene expression data from TNBC
|
| Sample_geo_accession | GSM1064460
| | Sample_status | Public on Jan 15 2013
| | Sample_submission_date | Jan 15 2013
| | Sample_last_update_date | Jan 15 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | From each sample, 5 ug of labeled cRNA was hybridized onto an Affymetrix U133 Plus2 GeneChip
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data analyzed by the software dChip, with the cutoff of P<0.01 and log2(fold-change)>1.1.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Keda,,Yu
| | Sample_contact_email | yukd@shca.org.cn
| | Sample_contact_institute | The Methodist Hospital Cancer Center, Houston, Texas
| | Sample_contact_address | 6565 Fannin Street
| | Sample_contact_city | Houston
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1064nnn/GSM1064460/suppl/GSM1064460_C01-0512-T0787_HG-U133_Plus_2_.CEL.gz
| | Sample_series_id | GSE43502
| | Sample_data_row_count | 54675
| | |
|
GSM1064461 | GPL570 |
|
C01-0527-T01087
|
TNBC patient with residual disease
|
disease state: Triple-negative breast cancer (TNBC)
tissue: breast
prognosis: no recurrence
age (years): 59
menopausal status: POST
|
Gene expression data from TNBC
|
| Sample_geo_accession | GSM1064461
| | Sample_status | Public on Jan 15 2013
| | Sample_submission_date | Jan 15 2013
| | Sample_last_update_date | Jan 15 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | From each sample, 5 ug of labeled cRNA was hybridized onto an Affymetrix U133 Plus2 GeneChip
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data analyzed by the software dChip, with the cutoff of P<0.01 and log2(fold-change)>1.1.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Keda,,Yu
| | Sample_contact_email | yukd@shca.org.cn
| | Sample_contact_institute | The Methodist Hospital Cancer Center, Houston, Texas
| | Sample_contact_address | 6565 Fannin Street
| | Sample_contact_city | Houston
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1064nnn/GSM1064461/suppl/GSM1064461_C01-0527-T01087_HG-U133_Plus_2_.CEL.gz
| | Sample_series_id | GSE43502
| | Sample_data_row_count | 54675
| | |
|
GSM1064462 | GPL570 |
|
C01-0530-T01146
|
TNBC patient with residual disease
|
disease state: Triple-negative breast cancer (TNBC)
tissue: breast
prognosis: no recurrence
age (years): 37
menopausal status: PRE
|
Gene expression data from TNBC
|
| Sample_geo_accession | GSM1064462
| | Sample_status | Public on Jan 15 2013
| | Sample_submission_date | Jan 15 2013
| | Sample_last_update_date | Jan 15 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | From each sample, 5 ug of labeled cRNA was hybridized onto an Affymetrix U133 Plus2 GeneChip
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data analyzed by the software dChip, with the cutoff of P<0.01 and log2(fold-change)>1.1.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Keda,,Yu
| | Sample_contact_email | yukd@shca.org.cn
| | Sample_contact_institute | The Methodist Hospital Cancer Center, Houston, Texas
| | Sample_contact_address | 6565 Fannin Street
| | Sample_contact_city | Houston
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1064nnn/GSM1064462/suppl/GSM1064462_C01-0530-T01146_HG-U133_Plus_2_.CEL.gz
| | Sample_series_id | GSE43502
| | Sample_data_row_count | 54675
| | |
|
GSM1064463 | GPL570 |
|
C01-0534-T01233
|
TNBC patient with residual disease
|
disease state: Triple-negative breast cancer (TNBC)
tissue: breast
prognosis: no recurrence
age (years): 62
menopausal status: POST
|
Gene expression data from TNBC
|
| Sample_geo_accession | GSM1064463
| | Sample_status | Public on Jan 15 2013
| | Sample_submission_date | Jan 15 2013
| | Sample_last_update_date | Jan 15 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | From each sample, 5 ug of labeled cRNA was hybridized onto an Affymetrix U133 Plus2 GeneChip
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data analyzed by the software dChip, with the cutoff of P<0.01 and log2(fold-change)>1.1.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Keda,,Yu
| | Sample_contact_email | yukd@shca.org.cn
| | Sample_contact_institute | The Methodist Hospital Cancer Center, Houston, Texas
| | Sample_contact_address | 6565 Fannin Street
| | Sample_contact_city | Houston
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1064nnn/GSM1064463/suppl/GSM1064463_C01-0534-T01233_HG-U133_Plus_2_.CEL.gz
| | Sample_series_id | GSE43502
| | Sample_data_row_count | 54675
| | |
|
GSM1064464 | GPL570 |
|
C01-0590-T01554
|
TNBC patient with residual disease
|
disease state: Triple-negative breast cancer (TNBC)
tissue: breast
prognosis: recurrence
age (years): 57
menopausal status: POST
|
Gene expression data from TNBC
|
| Sample_geo_accession | GSM1064464
| | Sample_status | Public on Jan 15 2013
| | Sample_submission_date | Jan 15 2013
| | Sample_last_update_date | Jan 15 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | From each sample, 5 ug of labeled cRNA was hybridized onto an Affymetrix U133 Plus2 GeneChip
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data analyzed by the software dChip, with the cutoff of P<0.01 and log2(fold-change)>1.1.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Keda,,Yu
| | Sample_contact_email | yukd@shca.org.cn
| | Sample_contact_institute | The Methodist Hospital Cancer Center, Houston, Texas
| | Sample_contact_address | 6565 Fannin Street
| | Sample_contact_city | Houston
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1064nnn/GSM1064464/suppl/GSM1064464_C01-0590-T01554_HG-U133_Plus_2_.CEL.gz
| | Sample_series_id | GSE43502
| | Sample_data_row_count | 54675
| | |
|
GSM1064465 | GPL570 |
|
C01-0617-T02021
|
TNBC patient with residual disease
|
disease state: Triple-negative breast cancer (TNBC)
tissue: breast
prognosis: recurrence
age (years): 45
menopausal status: PERI
|
Gene expression data from TNBC
|
| Sample_geo_accession | GSM1064465
| | Sample_status | Public on Jan 15 2013
| | Sample_submission_date | Jan 15 2013
| | Sample_last_update_date | Jan 15 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | From each sample, 5 ug of labeled cRNA was hybridized onto an Affymetrix U133 Plus2 GeneChip
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data analyzed by the software dChip, with the cutoff of P<0.01 and log2(fold-change)>1.1.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Keda,,Yu
| | Sample_contact_email | yukd@shca.org.cn
| | Sample_contact_institute | The Methodist Hospital Cancer Center, Houston, Texas
| | Sample_contact_address | 6565 Fannin Street
| | Sample_contact_city | Houston
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1064nnn/GSM1064465/suppl/GSM1064465_C01-0617-T02021_HG-U133_Plus_2_.CEL.gz
| | Sample_series_id | GSE43502
| | Sample_data_row_count | 54675
| | |
|
GSM1064466 | GPL570 |
|
C01-0629-T02148
|
TNBC patient with residual disease
|
disease state: Triple-negative breast cancer (TNBC)
tissue: breast
prognosis: recurrence
age (years): 33
menopausal status: PRE
|
Gene expression data from TNBC
|
| Sample_geo_accession | GSM1064466
| | Sample_status | Public on Jan 15 2013
| | Sample_submission_date | Jan 15 2013
| | Sample_last_update_date | Jan 15 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | From each sample, 5 ug of labeled cRNA was hybridized onto an Affymetrix U133 Plus2 GeneChip
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data analyzed by the software dChip, with the cutoff of P<0.01 and log2(fold-change)>1.1.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Keda,,Yu
| | Sample_contact_email | yukd@shca.org.cn
| | Sample_contact_institute | The Methodist Hospital Cancer Center, Houston, Texas
| | Sample_contact_address | 6565 Fannin Street
| | Sample_contact_city | Houston
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1064nnn/GSM1064466/suppl/GSM1064466_C01-0629-T02148_HG-U133_Plus_2_.CEL.gz
| | Sample_series_id | GSE43502
| | Sample_data_row_count | 54675
| | |
|
GSM1064467 | GPL570 |
|
C01-0639-T02292
|
TNBC patient with residual disease
|
disease state: Triple-negative breast cancer (TNBC)
tissue: breast
prognosis: no recurrence
age (years): 32
menopausal status: PRE
|
Gene expression data from TNBC
|
| Sample_geo_accession | GSM1064467
| | Sample_status | Public on Jan 15 2013
| | Sample_submission_date | Jan 15 2013
| | Sample_last_update_date | Jan 15 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | From each sample, 5 ug of labeled cRNA was hybridized onto an Affymetrix U133 Plus2 GeneChip
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data analyzed by the software dChip, with the cutoff of P<0.01 and log2(fold-change)>1.1.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Keda,,Yu
| | Sample_contact_email | yukd@shca.org.cn
| | Sample_contact_institute | The Methodist Hospital Cancer Center, Houston, Texas
| | Sample_contact_address | 6565 Fannin Street
| | Sample_contact_city | Houston
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1064nnn/GSM1064467/suppl/GSM1064467_C01-0639-T02292_HG-U133_Plus_2_.CEL.gz
| | Sample_series_id | GSE43502
| | Sample_data_row_count | 54675
| | |
|
GSM1064468 | GPL570 |
|
C01-0646-T02371
|
TNBC patient with residual disease
|
disease state: Triple-negative breast cancer (TNBC)
tissue: breast
prognosis: no recurrence
age (years): 55
menopausal status: POST
|
Gene expression data from TNBC
|
| Sample_geo_accession | GSM1064468
| | Sample_status | Public on Jan 15 2013
| | Sample_submission_date | Jan 15 2013
| | Sample_last_update_date | Jan 15 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | From each sample, 5 ug of labeled cRNA was hybridized onto an Affymetrix U133 Plus2 GeneChip
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data analyzed by the software dChip, with the cutoff of P<0.01 and log2(fold-change)>1.1.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Keda,,Yu
| | Sample_contact_email | yukd@shca.org.cn
| | Sample_contact_institute | The Methodist Hospital Cancer Center, Houston, Texas
| | Sample_contact_address | 6565 Fannin Street
| | Sample_contact_city | Houston
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1064nnn/GSM1064468/suppl/GSM1064468_C01-0646-T02371_HG-U133_Plus_2_.CEL.gz
| | Sample_series_id | GSE43502
| | Sample_data_row_count | 54675
| | |
|
GSM1064469 | GPL570 |
|
C01-0653-T02726
|
TNBC patient with residual disease
|
disease state: Triple-negative breast cancer (TNBC)
tissue: breast
prognosis: recurrence
age (years): 52
menopausal status: POST
|
Gene expression data from TNBC
|
| Sample_geo_accession | GSM1064469
| | Sample_status | Public on Jan 15 2013
| | Sample_submission_date | Jan 15 2013
| | Sample_last_update_date | Jan 15 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | From each sample, 5 ug of labeled cRNA was hybridized onto an Affymetrix U133 Plus2 GeneChip
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data analyzed by the software dChip, with the cutoff of P<0.01 and log2(fold-change)>1.1.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Keda,,Yu
| | Sample_contact_email | yukd@shca.org.cn
| | Sample_contact_institute | The Methodist Hospital Cancer Center, Houston, Texas
| | Sample_contact_address | 6565 Fannin Street
| | Sample_contact_city | Houston
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1064nnn/GSM1064469/suppl/GSM1064469_C01-0653-T02726_HG-U133_Plus_2_.CEL.gz
| | Sample_series_id | GSE43502
| | Sample_data_row_count | 54675
| | |
|
GSM1064470 | GPL570 |
|
C01-1219
|
TNBC patient with residual disease
|
disease state: Triple-negative breast cancer (TNBC)
tissue: breast
prognosis: no recurrence
age (years): 58
menopausal status: POST
|
Gene expression data from TNBC
|
| Sample_geo_accession | GSM1064470
| | Sample_status | Public on Jan 15 2013
| | Sample_submission_date | Jan 15 2013
| | Sample_last_update_date | Jan 15 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | From each sample, 5 ug of labeled cRNA was hybridized onto an Affymetrix U133 Plus2 GeneChip
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data analyzed by the software dChip, with the cutoff of P<0.01 and log2(fold-change)>1.1.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Keda,,Yu
| | Sample_contact_email | yukd@shca.org.cn
| | Sample_contact_institute | The Methodist Hospital Cancer Center, Houston, Texas
| | Sample_contact_address | 6565 Fannin Street
| | Sample_contact_city | Houston
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1064nnn/GSM1064470/suppl/GSM1064470_C01-1219_HG-U133_Plus_2_.CEL.gz
| | Sample_series_id | GSE43502
| | Sample_data_row_count | 54675
| | |
|
GSM1064471 | GPL570 |
|
C01-1259
|
TNBC patient with residual disease
|
disease state: Triple-negative breast cancer (TNBC)
tissue: breast
prognosis: recurrence
age (years): 46
menopausal status: PERI
|
Gene expression data from TNBC
|
| Sample_geo_accession | GSM1064471
| | Sample_status | Public on Jan 15 2013
| | Sample_submission_date | Jan 15 2013
| | Sample_last_update_date | Jan 15 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | From each sample, 5 ug of labeled cRNA was hybridized onto an Affymetrix U133 Plus2 GeneChip
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data analyzed by the software dChip, with the cutoff of P<0.01 and log2(fold-change)>1.1.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Keda,,Yu
| | Sample_contact_email | yukd@shca.org.cn
| | Sample_contact_institute | The Methodist Hospital Cancer Center, Houston, Texas
| | Sample_contact_address | 6565 Fannin Street
| | Sample_contact_city | Houston
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1064nnn/GSM1064471/suppl/GSM1064471_C01-1259_HG-U133_Plus_2_.CEL.gz
| | Sample_series_id | GSE43502
| | Sample_data_row_count | 54675
| | |
|
GSM1064472 | GPL570 |
|
C01-2273
|
TNBC patient with residual disease
|
disease state: Triple-negative breast cancer (TNBC)
tissue: breast
prognosis: recurrence
age (years): 55
menopausal status: POST
|
Gene expression data from TNBC
|
| Sample_geo_accession | GSM1064472
| | Sample_status | Public on Jan 15 2013
| | Sample_submission_date | Jan 15 2013
| | Sample_last_update_date | Jan 15 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | From each sample, 5 ug of labeled cRNA was hybridized onto an Affymetrix U133 Plus2 GeneChip
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data analyzed by the software dChip, with the cutoff of P<0.01 and log2(fold-change)>1.1.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Keda,,Yu
| | Sample_contact_email | yukd@shca.org.cn
| | Sample_contact_institute | The Methodist Hospital Cancer Center, Houston, Texas
| | Sample_contact_address | 6565 Fannin Street
| | Sample_contact_city | Houston
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1064nnn/GSM1064472/suppl/GSM1064472_C01-2273_HG-U133_Plus_2_.CEL.gz
| | Sample_series_id | GSE43502
| | Sample_data_row_count | 54675
| | |
|
GSM1064473 | GPL570 |
|
C01-2378
|
TNBC patient with residual disease
|
disease state: Triple-negative breast cancer (TNBC)
tissue: breast
prognosis: no recurrence
age (years): 27
menopausal status: PRE
|
Gene expression data from TNBC
|
| Sample_geo_accession | GSM1064473
| | Sample_status | Public on Jan 15 2013
| | Sample_submission_date | Jan 15 2013
| | Sample_last_update_date | Jan 15 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | From each sample, 5 ug of labeled cRNA was hybridized onto an Affymetrix U133 Plus2 GeneChip
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data analyzed by the software dChip, with the cutoff of P<0.01 and log2(fold-change)>1.1.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Keda,,Yu
| | Sample_contact_email | yukd@shca.org.cn
| | Sample_contact_institute | The Methodist Hospital Cancer Center, Houston, Texas
| | Sample_contact_address | 6565 Fannin Street
| | Sample_contact_city | Houston
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1064nnn/GSM1064473/suppl/GSM1064473_C01-2378_HG-U133_Plus_2_.CEL.gz
| | Sample_series_id | GSE43502
| | Sample_data_row_count | 54675
| | |
|
GSM1064474 | GPL570 |
|
C01-2392
|
TNBC patient with residual disease
|
disease state: Triple-negative breast cancer (TNBC)
tissue: breast
prognosis: recurrence
age (years): 50
menopausal status: POST
|
Gene expression data from TNBC
|
| Sample_geo_accession | GSM1064474
| | Sample_status | Public on Jan 15 2013
| | Sample_submission_date | Jan 15 2013
| | Sample_last_update_date | Jan 15 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | From each sample, 5 ug of labeled cRNA was hybridized onto an Affymetrix U133 Plus2 GeneChip
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data analyzed by the software dChip, with the cutoff of P<0.01 and log2(fold-change)>1.1.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Keda,,Yu
| | Sample_contact_email | yukd@shca.org.cn
| | Sample_contact_institute | The Methodist Hospital Cancer Center, Houston, Texas
| | Sample_contact_address | 6565 Fannin Street
| | Sample_contact_city | Houston
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1064nnn/GSM1064474/suppl/GSM1064474_C01-2392_HG-U133_Plus_2_.CEL.gz
| | Sample_series_id | GSE43502
| | Sample_data_row_count | 54675
| | |
|
GSM1064475 | GPL570 |
|
C01-2726
|
TNBC patient with residual disease
|
disease state: Triple-negative breast cancer (TNBC)
tissue: breast
prognosis: recurrence
age (years): 52
menopausal status: POST
|
Gene expression data from TNBC
|
| Sample_geo_accession | GSM1064475
| | Sample_status | Public on Jan 15 2013
| | Sample_submission_date | Jan 15 2013
| | Sample_last_update_date | Jan 15 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | From each sample, 5 ug of labeled cRNA was hybridized onto an Affymetrix U133 Plus2 GeneChip
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data analyzed by the software dChip, with the cutoff of P<0.01 and log2(fold-change)>1.1.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Keda,,Yu
| | Sample_contact_email | yukd@shca.org.cn
| | Sample_contact_institute | The Methodist Hospital Cancer Center, Houston, Texas
| | Sample_contact_address | 6565 Fannin Street
| | Sample_contact_city | Houston
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1064nnn/GSM1064475/suppl/GSM1064475_C01-2726_HG-U133_Plus_2_.CEL.gz
| | Sample_series_id | GSE43502
| | Sample_data_row_count | 54675
| | |
|
GSM1064476 | GPL570 |
|
C01-2780
|
TNBC patient with residual disease
|
disease state: Triple-negative breast cancer (TNBC)
tissue: breast
prognosis: recurrence
age (years): 52
menopausal status: POST
|
Gene expression data from TNBC
|
| Sample_geo_accession | GSM1064476
| | Sample_status | Public on Jan 15 2013
| | Sample_submission_date | Jan 15 2013
| | Sample_last_update_date | Jan 15 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | From each sample, 5 ug of labeled cRNA was hybridized onto an Affymetrix U133 Plus2 GeneChip
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data analyzed by the software dChip, with the cutoff of P<0.01 and log2(fold-change)>1.1.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Keda,,Yu
| | Sample_contact_email | yukd@shca.org.cn
| | Sample_contact_institute | The Methodist Hospital Cancer Center, Houston, Texas
| | Sample_contact_address | 6565 Fannin Street
| | Sample_contact_city | Houston
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1064nnn/GSM1064476/suppl/GSM1064476_C01-2780_HG-U133_Plus_2_.CEL.gz
| | Sample_series_id | GSE43502
| | Sample_data_row_count | 54675
| | |
|
GSM1064477 | GPL570 |
|
C01-3726
|
TNBC patient with residual disease
|
disease state: Triple-negative breast cancer (TNBC)
tissue: breast
prognosis: recurrence
age (years): 34
menopausal status: PRE
|
Gene expression data from TNBC
|
| Sample_geo_accession | GSM1064477
| | Sample_status | Public on Jan 15 2013
| | Sample_submission_date | Jan 15 2013
| | Sample_last_update_date | Jan 15 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | From each sample, 5 ug of labeled cRNA was hybridized onto an Affymetrix U133 Plus2 GeneChip
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data analyzed by the software dChip, with the cutoff of P<0.01 and log2(fold-change)>1.1.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Keda,,Yu
| | Sample_contact_email | yukd@shca.org.cn
| | Sample_contact_institute | The Methodist Hospital Cancer Center, Houston, Texas
| | Sample_contact_address | 6565 Fannin Street
| | Sample_contact_city | Houston
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1064nnn/GSM1064477/suppl/GSM1064477_C01-3726_HG-U133_Plus_2_.CEL.gz
| | Sample_series_id | GSE43502
| | Sample_data_row_count | 54675
| | |
|
GSM1064478 | GPL570 |
|
C01-382
|
TNBC patient with residual disease
|
disease state: Triple-negative breast cancer (TNBC)
tissue: breast
prognosis: recurrence
age (years): 36
menopausal status: PRE
|
Gene expression data from TNBC
|
| Sample_geo_accession | GSM1064478
| | Sample_status | Public on Jan 15 2013
| | Sample_submission_date | Jan 15 2013
| | Sample_last_update_date | Jan 15 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | From each sample, 5 ug of labeled cRNA was hybridized onto an Affymetrix U133 Plus2 GeneChip
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data analyzed by the software dChip, with the cutoff of P<0.01 and log2(fold-change)>1.1.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Keda,,Yu
| | Sample_contact_email | yukd@shca.org.cn
| | Sample_contact_institute | The Methodist Hospital Cancer Center, Houston, Texas
| | Sample_contact_address | 6565 Fannin Street
| | Sample_contact_city | Houston
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1064nnn/GSM1064478/suppl/GSM1064478_C01-382_HG-U133_Plus_2_.CEL.gz
| | Sample_series_id | GSE43502
| | Sample_data_row_count | 54675
| | |
|
GSM1064479 | GPL570 |
|
C01-3906
|
TNBC patient with residual disease
|
disease state: Triple-negative breast cancer (TNBC)
tissue: breast
prognosis: recurrence
age (years): 73
menopausal status: POST
|
Gene expression data from TNBC
|
| Sample_geo_accession | GSM1064479
| | Sample_status | Public on Jan 15 2013
| | Sample_submission_date | Jan 15 2013
| | Sample_last_update_date | Jan 15 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | From each sample, 5 ug of labeled cRNA was hybridized onto an Affymetrix U133 Plus2 GeneChip
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data analyzed by the software dChip, with the cutoff of P<0.01 and log2(fold-change)>1.1.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Keda,,Yu
| | Sample_contact_email | yukd@shca.org.cn
| | Sample_contact_institute | The Methodist Hospital Cancer Center, Houston, Texas
| | Sample_contact_address | 6565 Fannin Street
| | Sample_contact_city | Houston
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1064nnn/GSM1064479/suppl/GSM1064479_C01-3906_HG-U133_Plus_2_.CEL.gz
| | Sample_series_id | GSE43502
| | Sample_data_row_count | 54675
| | |
|
GSM1064480 | GPL570 |
|
C01-465
|
TNBC patient with residual disease
|
disease state: Triple-negative breast cancer (TNBC)
tissue: breast
prognosis: recurrence
age (years): 57
menopausal status: POST
|
Gene expression data from TNBC
|
| Sample_geo_accession | GSM1064480
| | Sample_status | Public on Jan 15 2013
| | Sample_submission_date | Jan 15 2013
| | Sample_last_update_date | Jan 15 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | From each sample, 5 ug of labeled cRNA was hybridized onto an Affymetrix U133 Plus2 GeneChip
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data analyzed by the software dChip, with the cutoff of P<0.01 and log2(fold-change)>1.1.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Keda,,Yu
| | Sample_contact_email | yukd@shca.org.cn
| | Sample_contact_institute | The Methodist Hospital Cancer Center, Houston, Texas
| | Sample_contact_address | 6565 Fannin Street
| | Sample_contact_city | Houston
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1064nnn/GSM1064480/suppl/GSM1064480_C01-465_HG-U133_Plus_2_.CEL.gz
| | Sample_series_id | GSE43502
| | Sample_data_row_count | 54675
| | |
|
GSM1064481 | GPL570 |
|
C01-665
|
TNBC patient with residual disease
|
disease state: Triple-negative breast cancer (TNBC)
tissue: breast
prognosis: no recurrence
age (years): 42
menopausal status: PRE
|
Gene expression data from TNBC
|
| Sample_geo_accession | GSM1064481
| | Sample_status | Public on Jan 15 2013
| | Sample_submission_date | Jan 15 2013
| | Sample_last_update_date | Jan 15 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | From each sample, 5 ug of labeled cRNA was hybridized onto an Affymetrix U133 Plus2 GeneChip
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data analyzed by the software dChip, with the cutoff of P<0.01 and log2(fold-change)>1.1.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Keda,,Yu
| | Sample_contact_email | yukd@shca.org.cn
| | Sample_contact_institute | The Methodist Hospital Cancer Center, Houston, Texas
| | Sample_contact_address | 6565 Fannin Street
| | Sample_contact_city | Houston
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1064nnn/GSM1064481/suppl/GSM1064481_C01-665_HG-U133_Plus_2_.CEL.gz
| | Sample_series_id | GSE43502
| | Sample_data_row_count | 54675
| | |
|
GSM1064482 | GPL570 |
|
C01-824
|
TNBC patient with residual disease
|
disease state: Triple-negative breast cancer (TNBC)
tissue: breast
prognosis: recurrence
age (years): 51
menopausal status: PRE
|
Gene expression data from TNBC
|
| Sample_geo_accession | GSM1064482
| | Sample_status | Public on Jan 15 2013
| | Sample_submission_date | Jan 15 2013
| | Sample_last_update_date | Jan 15 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | From each sample, 5 ug of labeled cRNA was hybridized onto an Affymetrix U133 Plus2 GeneChip
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data analyzed by the software dChip, with the cutoff of P<0.01 and log2(fold-change)>1.1.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Keda,,Yu
| | Sample_contact_email | yukd@shca.org.cn
| | Sample_contact_institute | The Methodist Hospital Cancer Center, Houston, Texas
| | Sample_contact_address | 6565 Fannin Street
| | Sample_contact_city | Houston
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1064nnn/GSM1064482/suppl/GSM1064482_C01-824_HG-U133_Plus_2_.CEL.gz
| | Sample_series_id | GSE43502
| | Sample_data_row_count | 54675
| | |
|
GSM1064483 | GPL570 |
|
C01-854
|
TNBC patient with residual disease
|
disease state: Triple-negative breast cancer (TNBC)
tissue: breast
prognosis: recurrence
age (years): 46
menopausal status: PRE
|
Gene expression data from TNBC
|
| Sample_geo_accession | GSM1064483
| | Sample_status | Public on Jan 15 2013
| | Sample_submission_date | Jan 15 2013
| | Sample_last_update_date | Jan 15 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | From each sample, 5 ug of labeled cRNA was hybridized onto an Affymetrix U133 Plus2 GeneChip
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data analyzed by the software dChip, with the cutoff of P<0.01 and log2(fold-change)>1.1.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Keda,,Yu
| | Sample_contact_email | yukd@shca.org.cn
| | Sample_contact_institute | The Methodist Hospital Cancer Center, Houston, Texas
| | Sample_contact_address | 6565 Fannin Street
| | Sample_contact_city | Houston
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1064nnn/GSM1064483/suppl/GSM1064483_C01-854_HG-U133_Plus_2_.CEL.gz
| | Sample_series_id | GSE43502
| | Sample_data_row_count | 54675
| | |
|
GSM1064484 | GPL570 |
|
C01-958
|
TNBC patient with residual disease
|
disease state: Triple-negative breast cancer (TNBC)
tissue: breast
prognosis: recurrence
age (years): 42
menopausal status: PRE
|
Gene expression data from TNBC
|
| Sample_geo_accession | GSM1064484
| | Sample_status | Public on Jan 15 2013
| | Sample_submission_date | Jan 15 2013
| | Sample_last_update_date | Jan 15 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | From each sample, 5 ug of labeled cRNA was hybridized onto an Affymetrix U133 Plus2 GeneChip
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data analyzed by the software dChip, with the cutoff of P<0.01 and log2(fold-change)>1.1.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Keda,,Yu
| | Sample_contact_email | yukd@shca.org.cn
| | Sample_contact_institute | The Methodist Hospital Cancer Center, Houston, Texas
| | Sample_contact_address | 6565 Fannin Street
| | Sample_contact_city | Houston
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1064nnn/GSM1064484/suppl/GSM1064484_C01-958_HG-U133_Plus_2_.CEL.gz
| | Sample_series_id | GSE43502
| | Sample_data_row_count | 54675
| | |
|
| |
| |
Make groups for comparisons |
(2 groups will be compared at a time) |
|
| Select GSMs and click on "Add groups" |
Enter the group name here: |
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