Search results for the GEO ID: GSE43552  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM1065185 | GPL570 |
|
1-ONS76_a
|
ONS76, KDM5A siRNA
|
cell line: ONS76
cell type: medulloblastoma
treatment: KDM5A siRNA
transfectant: ONS76_si_KDM5A
|
|
| Sample_geo_accession | GSM1065185
| | Sample_status | Public on Aug 01 2013
| | Sample_submission_date | Jan 16 2013
| | Sample_last_update_date | Aug 01 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | KDM5A/LSD1 knockdown by siRNA was performed according to a published protocol (Schulte et al., Cancer Research, 2009 (PMID 19223552)).
| | Sample_treatment_protocol_ch1 | Cells were harvested 48 h after KDM5A/LSD1 knockdown.
| | Sample_growth_protocol_ch1 | ONS76 cells were cultivated as described (Kuenkele et al., Neuro Oncol, 2012 (PMID 22591662)).
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | QIAGEN RNeasy mini kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotin labelling was performed according to the manufacturer's recommendations (Affymetrix).
| | Sample_hyb_protocol | Hybridisation to human arrays was performed according to the manufacturer's recommendations (Affymetrix).
| | Sample_scan_protocol | Scanning of chips was performed using a GeneArray scanner (Agilent).
| | Sample_data_processing | Signal intensities were normalized using the RMA normalization feature in Partek Genomics Suite (Partek, Inc.).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Alexander,,Schramm
| | Sample_contact_email | alexander.schramm@uk-essen.de
| | Sample_contact_laboratory | Hematology/Oncology Lab
| | Sample_contact_department | Childrens Hospital
| | Sample_contact_institute | University Hospital Essen
| | Sample_contact_address | Hufelandstr. 55
| | Sample_contact_city | Essen
| | Sample_contact_zip/postal_code | 45122
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1065nnn/GSM1065185/suppl/GSM1065185_1-ONS76_a.CEL.gz
| | Sample_series_id | GSE43552
| | Sample_data_row_count | 54675
| | |
|
GSM1065186 | GPL570 |
|
2-ONS76_b
|
ONS76, KDM5A siRNA
|
cell line: ONS76
cell type: medulloblastoma
treatment: KDM5A siRNA
transfectant: ONS76_si_KDM5A
|
|
| Sample_geo_accession | GSM1065186
| | Sample_status | Public on Aug 01 2013
| | Sample_submission_date | Jan 16 2013
| | Sample_last_update_date | Aug 01 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | KDM5A/LSD1 knockdown by siRNA was performed according to a published protocol (Schulte et al., Cancer Research, 2009 (PMID 19223552)).
| | Sample_treatment_protocol_ch1 | Cells were harvested 48 h after KDM5A/LSD1 knockdown.
| | Sample_growth_protocol_ch1 | ONS76 cells were cultivated as described (Kuenkele et al., Neuro Oncol, 2012 (PMID 22591662)).
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | QIAGEN RNeasy mini kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotin labelling was performed according to the manufacturer's recommendations (Affymetrix).
| | Sample_hyb_protocol | Hybridisation to human arrays was performed according to the manufacturer's recommendations (Affymetrix).
| | Sample_scan_protocol | Scanning of chips was performed using a GeneArray scanner (Agilent).
| | Sample_data_processing | Signal intensities were normalized using the RMA normalization feature in Partek Genomics Suite (Partek, Inc.).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Alexander,,Schramm
| | Sample_contact_email | alexander.schramm@uk-essen.de
| | Sample_contact_laboratory | Hematology/Oncology Lab
| | Sample_contact_department | Childrens Hospital
| | Sample_contact_institute | University Hospital Essen
| | Sample_contact_address | Hufelandstr. 55
| | Sample_contact_city | Essen
| | Sample_contact_zip/postal_code | 45122
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1065nnn/GSM1065186/suppl/GSM1065186_2-ONS76_b.CEL.gz
| | Sample_series_id | GSE43552
| | Sample_data_row_count | 54675
| | |
|
GSM1065187 | GPL570 |
|
3-ONS76_c
|
ONS76, KDM5A siRNA
|
cell line: ONS76
cell type: medulloblastoma
treatment: KDM5A siRNA
transfectant: ONS76_si_KDM5A
|
|
| Sample_geo_accession | GSM1065187
| | Sample_status | Public on Aug 01 2013
| | Sample_submission_date | Jan 16 2013
| | Sample_last_update_date | Aug 01 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | KDM5A/LSD1 knockdown by siRNA was performed according to a published protocol (Schulte et al., Cancer Research, 2009 (PMID 19223552)).
| | Sample_treatment_protocol_ch1 | Cells were harvested 48 h after KDM5A/LSD1 knockdown.
| | Sample_growth_protocol_ch1 | ONS76 cells were cultivated as described (Kuenkele et al., Neuro Oncol, 2012 (PMID 22591662)).
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | QIAGEN RNeasy mini kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotin labelling was performed according to the manufacturer's recommendations (Affymetrix).
| | Sample_hyb_protocol | Hybridisation to human arrays was performed according to the manufacturer's recommendations (Affymetrix).
| | Sample_scan_protocol | Scanning of chips was performed using a GeneArray scanner (Agilent).
| | Sample_data_processing | Signal intensities were normalized using the RMA normalization feature in Partek Genomics Suite (Partek, Inc.).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Alexander,,Schramm
| | Sample_contact_email | alexander.schramm@uk-essen.de
| | Sample_contact_laboratory | Hematology/Oncology Lab
| | Sample_contact_department | Childrens Hospital
| | Sample_contact_institute | University Hospital Essen
| | Sample_contact_address | Hufelandstr. 55
| | Sample_contact_city | Essen
| | Sample_contact_zip/postal_code | 45122
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1065nnn/GSM1065187/suppl/GSM1065187_3-ONS76_c.CEL.gz
| | Sample_series_id | GSE43552
| | Sample_data_row_count | 54675
| | |
|
GSM1065188 | GPL570 |
|
4-ONS76 Mock_a
|
ONS76, mock control
|
cell line: ONS76
cell type: medulloblastoma
treatment: mock control
transfectant: ONS76_si_mock
|
|
| Sample_geo_accession | GSM1065188
| | Sample_status | Public on Aug 01 2013
| | Sample_submission_date | Jan 16 2013
| | Sample_last_update_date | Aug 01 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | KDM5A/LSD1 knockdown by siRNA was performed according to a published protocol (Schulte et al., Cancer Research, 2009 (PMID 19223552)).
| | Sample_treatment_protocol_ch1 | Cells were harvested 48 h after KDM5A/LSD1 knockdown.
| | Sample_growth_protocol_ch1 | ONS76 cells were cultivated as described (Kuenkele et al., Neuro Oncol, 2012 (PMID 22591662)).
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | QIAGEN RNeasy mini kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotin labelling was performed according to the manufacturer's recommendations (Affymetrix).
| | Sample_hyb_protocol | Hybridisation to human arrays was performed according to the manufacturer's recommendations (Affymetrix).
| | Sample_scan_protocol | Scanning of chips was performed using a GeneArray scanner (Agilent).
| | Sample_data_processing | Signal intensities were normalized using the RMA normalization feature in Partek Genomics Suite (Partek, Inc.).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Alexander,,Schramm
| | Sample_contact_email | alexander.schramm@uk-essen.de
| | Sample_contact_laboratory | Hematology/Oncology Lab
| | Sample_contact_department | Childrens Hospital
| | Sample_contact_institute | University Hospital Essen
| | Sample_contact_address | Hufelandstr. 55
| | Sample_contact_city | Essen
| | Sample_contact_zip/postal_code | 45122
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1065nnn/GSM1065188/suppl/GSM1065188_4-ONS76_Mock_a.CEL.gz
| | Sample_series_id | GSE43552
| | Sample_data_row_count | 54675
| | |
|
GSM1065189 | GPL570 |
|
5-ONS76 Mock_b
|
ONS76, mock control
|
cell line: ONS76
cell type: medulloblastoma
treatment: mock control
transfectant: ONS76_si_mock
|
|
| Sample_geo_accession | GSM1065189
| | Sample_status | Public on Aug 01 2013
| | Sample_submission_date | Jan 16 2013
| | Sample_last_update_date | Aug 01 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | KDM5A/LSD1 knockdown by siRNA was performed according to a published protocol (Schulte et al., Cancer Research, 2009 (PMID 19223552)).
| | Sample_treatment_protocol_ch1 | Cells were harvested 48 h after KDM5A/LSD1 knockdown.
| | Sample_growth_protocol_ch1 | ONS76 cells were cultivated as described (Kuenkele et al., Neuro Oncol, 2012 (PMID 22591662)).
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | QIAGEN RNeasy mini kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotin labelling was performed according to the manufacturer's recommendations (Affymetrix).
| | Sample_hyb_protocol | Hybridisation to human arrays was performed according to the manufacturer's recommendations (Affymetrix).
| | Sample_scan_protocol | Scanning of chips was performed using a GeneArray scanner (Agilent).
| | Sample_data_processing | Signal intensities were normalized using the RMA normalization feature in Partek Genomics Suite (Partek, Inc.).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Alexander,,Schramm
| | Sample_contact_email | alexander.schramm@uk-essen.de
| | Sample_contact_laboratory | Hematology/Oncology Lab
| | Sample_contact_department | Childrens Hospital
| | Sample_contact_institute | University Hospital Essen
| | Sample_contact_address | Hufelandstr. 55
| | Sample_contact_city | Essen
| | Sample_contact_zip/postal_code | 45122
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1065nnn/GSM1065189/suppl/GSM1065189_5-ONS76_Mock_b.CEL.gz
| | Sample_series_id | GSE43552
| | Sample_data_row_count | 54675
| | |
|
GSM1065190 | GPL570 |
|
6-ONS76 Mock_c
|
ONS76, mock control
|
cell line: ONS76
cell type: medulloblastoma
treatment: mock control
transfectant: ONS76_si_mock
|
|
| Sample_geo_accession | GSM1065190
| | Sample_status | Public on Aug 01 2013
| | Sample_submission_date | Jan 16 2013
| | Sample_last_update_date | Aug 01 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | KDM5A/LSD1 knockdown by siRNA was performed according to a published protocol (Schulte et al., Cancer Research, 2009 (PMID 19223552)).
| | Sample_treatment_protocol_ch1 | Cells were harvested 48 h after KDM5A/LSD1 knockdown.
| | Sample_growth_protocol_ch1 | ONS76 cells were cultivated as described (Kuenkele et al., Neuro Oncol, 2012 (PMID 22591662)).
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | QIAGEN RNeasy mini kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotin labelling was performed according to the manufacturer's recommendations (Affymetrix).
| | Sample_hyb_protocol | Hybridisation to human arrays was performed according to the manufacturer's recommendations (Affymetrix).
| | Sample_scan_protocol | Scanning of chips was performed using a GeneArray scanner (Agilent).
| | Sample_data_processing | Signal intensities were normalized using the RMA normalization feature in Partek Genomics Suite (Partek, Inc.).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Alexander,,Schramm
| | Sample_contact_email | alexander.schramm@uk-essen.de
| | Sample_contact_laboratory | Hematology/Oncology Lab
| | Sample_contact_department | Childrens Hospital
| | Sample_contact_institute | University Hospital Essen
| | Sample_contact_address | Hufelandstr. 55
| | Sample_contact_city | Essen
| | Sample_contact_zip/postal_code | 45122
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1065nnn/GSM1065190/suppl/GSM1065190_6-ONS76_Mock_c.CEL.gz
| | Sample_series_id | GSE43552
| | Sample_data_row_count | 54675
| | |
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