Search results for the GEO ID: GSE43563  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM1065369 | GPL1261 |
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Wild-type GMP
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Wild-type GMP
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strain: mixed background C57BL6J/129SV
genotype/ variation: wild-type unstimulated
cell type: granulocyte monocyte progenitor
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| Sample_geo_accession | GSM1065369
| | Sample_status | Public on Jan 18 2013
| | Sample_submission_date | Jan 16 2013
| | Sample_last_update_date | Jan 23 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | no treatment
| | Sample_growth_protocol_ch1 | Mouse progenitor cells were sorted. No treatment
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared by NuGEN Ovation system according to the manufactuerer's inscrution.
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix GeneChip Mouse Genome 430 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Gene CHIP scanner 3000.
| | Sample_data_processing | The data were analyzed with RMA using R program
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Takashi,,Satoh
| | Sample_contact_email | sohsatoh@biken.osaka-u.ac.jp
| | Sample_contact_phone | 81-6-6879-8303
| | Sample_contact_fax | 81-6-6879-8305
| | Sample_contact_laboratory | Host Defense
| | Sample_contact_department | RIMD
| | Sample_contact_institute | Osaka university
| | Sample_contact_address | 3-1 Yamada-oka
| | Sample_contact_city | Suita
| | Sample_contact_state | Osaka
| | Sample_contact_zip/postal_code | 565-0871
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1065nnn/GSM1065369/suppl/GSM1065369_gm_WT.CEL.gz
| | Sample_series_id | GSE43563
| | Sample_data_row_count | 45101
| | |
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GSM1065370 | GPL1261 |
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Trib1-/- GMP
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Trib1-/- GMP
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strain: mixed background C57BL6J/129SV
genotype/ variation: Trib1-/- unstimulated
cell type: granulocyte monocyte progenitor
|
|
| Sample_geo_accession | GSM1065370
| | Sample_status | Public on Jan 18 2013
| | Sample_submission_date | Jan 16 2013
| | Sample_last_update_date | Jan 23 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | no treatment
| | Sample_growth_protocol_ch1 | Mouse progenitor cells were sorted. No treatment
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared by NuGEN Ovation system according to the manufactuerer's inscrution.
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix GeneChip Mouse Genome 430 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Gene CHIP scanner 3000.
| | Sample_data_processing | The data were analyzed with RMA using R program
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Takashi,,Satoh
| | Sample_contact_email | sohsatoh@biken.osaka-u.ac.jp
| | Sample_contact_phone | 81-6-6879-8303
| | Sample_contact_fax | 81-6-6879-8305
| | Sample_contact_laboratory | Host Defense
| | Sample_contact_department | RIMD
| | Sample_contact_institute | Osaka university
| | Sample_contact_address | 3-1 Yamada-oka
| | Sample_contact_city | Suita
| | Sample_contact_state | Osaka
| | Sample_contact_zip/postal_code | 565-0871
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1065nnn/GSM1065370/suppl/GSM1065370_gm_KO.CEL.gz
| | Sample_series_id | GSE43563
| | Sample_data_row_count | 45101
| | |
|
GSM1065371 | GPL1261 |
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Wild-type MDP
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Wild-type MDP
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strain: mixed background C57BL6J/129SV
genotype/ variation: wild-type unstimulated
cell type: macrophage dendritic cell
|
|
| Sample_geo_accession | GSM1065371
| | Sample_status | Public on Jan 18 2013
| | Sample_submission_date | Jan 16 2013
| | Sample_last_update_date | Jan 23 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | no treatment
| | Sample_growth_protocol_ch1 | Mouse progenitor cells were sorted. No treatment
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared by NuGEN Ovation system according to the manufactuerer's inscrution.
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix GeneChip Mouse Genome 430 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Gene CHIP scanner 3000.
| | Sample_data_processing | The data were analyzed with RMA using R program
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Takashi,,Satoh
| | Sample_contact_email | sohsatoh@biken.osaka-u.ac.jp
| | Sample_contact_phone | 81-6-6879-8303
| | Sample_contact_fax | 81-6-6879-8305
| | Sample_contact_laboratory | Host Defense
| | Sample_contact_department | RIMD
| | Sample_contact_institute | Osaka university
| | Sample_contact_address | 3-1 Yamada-oka
| | Sample_contact_city | Suita
| | Sample_contact_state | Osaka
| | Sample_contact_zip/postal_code | 565-0871
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1065nnn/GSM1065371/suppl/GSM1065371_MD_WT.CEL.gz
| | Sample_series_id | GSE43563
| | Sample_data_row_count | 45101
| | |
|
GSM1065372 | GPL1261 |
|
Trib1-/- MDP
|
Trib1-/- MDP
|
strain: mixed background C57BL6J/129SV
genotype/ variation: Trib1-/- unstimulated
cell type: macrophage dendritic cell
|
|
| Sample_geo_accession | GSM1065372
| | Sample_status | Public on Jan 18 2013
| | Sample_submission_date | Jan 16 2013
| | Sample_last_update_date | Jan 23 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | no treatment
| | Sample_growth_protocol_ch1 | Mouse progenitor cells were sorted. No treatment
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared by NuGEN Ovation system according to the manufactuerer's inscrution.
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix GeneChip Mouse Genome 430 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Gene CHIP scanner 3000.
| | Sample_data_processing | The data were analyzed with RMA using R program
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Takashi,,Satoh
| | Sample_contact_email | sohsatoh@biken.osaka-u.ac.jp
| | Sample_contact_phone | 81-6-6879-8303
| | Sample_contact_fax | 81-6-6879-8305
| | Sample_contact_laboratory | Host Defense
| | Sample_contact_department | RIMD
| | Sample_contact_institute | Osaka university
| | Sample_contact_address | 3-1 Yamada-oka
| | Sample_contact_city | Suita
| | Sample_contact_state | Osaka
| | Sample_contact_zip/postal_code | 565-0871
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1065nnn/GSM1065372/suppl/GSM1065372_MD_KO.CEL.gz
| | Sample_series_id | GSE43563
| | Sample_data_row_count | 45101
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