Search results for the GEO ID: GSE43581  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM1065875 | GPL1261 |
|
control_refed_rep1
|
Liver RNA from fasted/refed control mouse
|
tissue: liver
strain: SV129XC57Bl/6
genotype: control
diet: fasted/refed
|
|
| Sample_geo_accession | GSM1065875
| | Sample_status | Public on Jan 18 2013
| | Sample_submission_date | Jan 17 2013
| | Sample_last_update_date | Jan 18 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Liver RNAs were extracted using Trifast reagent (Peqlab). For each group, 3 pools of RNA from 3 animals were prepared.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | The synthesis of cRNA was performed using the GeneChip® One-Cycle cDNA Synthesis according to the manufacturer' protocol (Affymetrix, Santa Clara, CA, USA). Labeling, hybridization and scanning of the samples were performed as described by Affymetrix (www.affymetrix.com).
| | Sample_hyb_protocol | Affymetrix Mouse Genome 430 2.0 arrays were hybridized with 11 microgramme of labeled, amplified cRNA , washed, stained and scanned according to the protocol described in Affymetrix GeneChip® Expression Analysis Manual (Fluidics protocol EukGeWS2v5_450)
| | Sample_scan_protocol | Scanning was done on an Affymetrix GeneChip Scanner 7G
| | Sample_data_processing | Normalized expression signals were calculated from Affymetrix CEL files using RMA (Irizarry et al., 2003).
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Frédéric,,Schütz
| | Sample_contact_email | Frederic.Schutz@isb-sib.ch
| | Sample_contact_institute | Swiss Institute of Bioinformatics
| | Sample_contact_address | Batiment Genopode
| | Sample_contact_city | Lausanne
| | Sample_contact_zip/postal_code | 1015
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1065nnn/GSM1065875/suppl/GSM1065875_ps_ctrl_refed_1.CEL.gz
| | Sample_series_id | GSE43581
| | Sample_data_row_count | 45101
| | |
|
GSM1065876 | GPL1261 |
|
control_refed_rep2
|
Liver RNA from fasted/refed control mouse
|
tissue: liver
strain: SV129XC57Bl/6
genotype: control
diet: fasted/refed
|
|
| Sample_geo_accession | GSM1065876
| | Sample_status | Public on Jan 18 2013
| | Sample_submission_date | Jan 17 2013
| | Sample_last_update_date | Jan 18 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Liver RNAs were extracted using Trifast reagent (Peqlab). For each group, 3 pools of RNA from 3 animals were prepared.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | The synthesis of cRNA was performed using the GeneChip® One-Cycle cDNA Synthesis according to the manufacturer' protocol (Affymetrix, Santa Clara, CA, USA). Labeling, hybridization and scanning of the samples were performed as described by Affymetrix (www.affymetrix.com).
| | Sample_hyb_protocol | Affymetrix Mouse Genome 430 2.0 arrays were hybridized with 11 microgramme of labeled, amplified cRNA , washed, stained and scanned according to the protocol described in Affymetrix GeneChip® Expression Analysis Manual (Fluidics protocol EukGeWS2v5_450)
| | Sample_scan_protocol | Scanning was done on an Affymetrix GeneChip Scanner 7G
| | Sample_data_processing | Normalized expression signals were calculated from Affymetrix CEL files using RMA (Irizarry et al., 2003).
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Frédéric,,Schütz
| | Sample_contact_email | Frederic.Schutz@isb-sib.ch
| | Sample_contact_institute | Swiss Institute of Bioinformatics
| | Sample_contact_address | Batiment Genopode
| | Sample_contact_city | Lausanne
| | Sample_contact_zip/postal_code | 1015
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1065nnn/GSM1065876/suppl/GSM1065876_ps_ctrl_refed_2.CEL.gz
| | Sample_series_id | GSE43581
| | Sample_data_row_count | 45101
| | |
|
GSM1065877 | GPL1261 |
|
control_refed_rep3
|
Liver RNA from fasted/refed control mouse
|
tissue: liver
strain: SV129XC57Bl/6
genotype: control
diet: fasted/refed
|
|
| Sample_geo_accession | GSM1065877
| | Sample_status | Public on Jan 18 2013
| | Sample_submission_date | Jan 17 2013
| | Sample_last_update_date | Jan 18 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Liver RNAs were extracted using Trifast reagent (Peqlab). For each group, 3 pools of RNA from 3 animals were prepared.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | The synthesis of cRNA was performed using the GeneChip® One-Cycle cDNA Synthesis according to the manufacturer' protocol (Affymetrix, Santa Clara, CA, USA). Labeling, hybridization and scanning of the samples were performed as described by Affymetrix (www.affymetrix.com).
| | Sample_hyb_protocol | Affymetrix Mouse Genome 430 2.0 arrays were hybridized with 11 microgramme of labeled, amplified cRNA , washed, stained and scanned according to the protocol described in Affymetrix GeneChip® Expression Analysis Manual (Fluidics protocol EukGeWS2v5_450)
| | Sample_scan_protocol | Scanning was done on an Affymetrix GeneChip Scanner 7G
| | Sample_data_processing | Normalized expression signals were calculated from Affymetrix CEL files using RMA (Irizarry et al., 2003).
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Frédéric,,Schütz
| | Sample_contact_email | Frederic.Schutz@isb-sib.ch
| | Sample_contact_institute | Swiss Institute of Bioinformatics
| | Sample_contact_address | Batiment Genopode
| | Sample_contact_city | Lausanne
| | Sample_contact_zip/postal_code | 1015
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1065nnn/GSM1065877/suppl/GSM1065877_ps_ctrl_refed_3.CEL.gz
| | Sample_series_id | GSE43581
| | Sample_data_row_count | 45101
| | |
|
GSM1065878 | GPL1261 |
|
tamox_refed_rep1
|
Liver RNA from fasted/refed LG2KO (tamoxifen treated) mouse
|
tissue: liver
strain: SV129XC57Bl/6
genotype: LG2KO
diet: fasted/refed
|
|
| Sample_geo_accession | GSM1065878
| | Sample_status | Public on Jan 18 2013
| | Sample_submission_date | Jan 17 2013
| | Sample_last_update_date | Jan 18 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Liver RNAs were extracted using Trifast reagent (Peqlab). For each group, 3 pools of RNA from 3 animals were prepared.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | The synthesis of cRNA was performed using the GeneChip® One-Cycle cDNA Synthesis according to the manufacturer' protocol (Affymetrix, Santa Clara, CA, USA). Labeling, hybridization and scanning of the samples were performed as described by Affymetrix (www.affymetrix.com).
| | Sample_hyb_protocol | Affymetrix Mouse Genome 430 2.0 arrays were hybridized with 11 microgramme of labeled, amplified cRNA , washed, stained and scanned according to the protocol described in Affymetrix GeneChip® Expression Analysis Manual (Fluidics protocol EukGeWS2v5_450)
| | Sample_scan_protocol | Scanning was done on an Affymetrix GeneChip Scanner 7G
| | Sample_data_processing | Normalized expression signals were calculated from Affymetrix CEL files using RMA (Irizarry et al., 2003).
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Frédéric,,Schütz
| | Sample_contact_email | Frederic.Schutz@isb-sib.ch
| | Sample_contact_institute | Swiss Institute of Bioinformatics
| | Sample_contact_address | Batiment Genopode
| | Sample_contact_city | Lausanne
| | Sample_contact_zip/postal_code | 1015
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1065nnn/GSM1065878/suppl/GSM1065878_ps_tamox_refed_4.CEL.gz
| | Sample_series_id | GSE43581
| | Sample_data_row_count | 45101
| | |
|
GSM1065879 | GPL1261 |
|
tamox_refed_rep2
|
Liver RNA from fasted/refed LG2KO (tamoxifen treated) mouse
|
tissue: liver
strain: SV129XC57Bl/6
genotype: LG2KO
diet: fasted/refed
|
|
| Sample_geo_accession | GSM1065879
| | Sample_status | Public on Jan 18 2013
| | Sample_submission_date | Jan 17 2013
| | Sample_last_update_date | Jan 18 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Liver RNAs were extracted using Trifast reagent (Peqlab). For each group, 3 pools of RNA from 3 animals were prepared.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | The synthesis of cRNA was performed using the GeneChip® One-Cycle cDNA Synthesis according to the manufacturer' protocol (Affymetrix, Santa Clara, CA, USA). Labeling, hybridization and scanning of the samples were performed as described by Affymetrix (www.affymetrix.com).
| | Sample_hyb_protocol | Affymetrix Mouse Genome 430 2.0 arrays were hybridized with 11 microgramme of labeled, amplified cRNA , washed, stained and scanned according to the protocol described in Affymetrix GeneChip® Expression Analysis Manual (Fluidics protocol EukGeWS2v5_450)
| | Sample_scan_protocol | Scanning was done on an Affymetrix GeneChip Scanner 7G
| | Sample_data_processing | Normalized expression signals were calculated from Affymetrix CEL files using RMA (Irizarry et al., 2003).
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Frédéric,,Schütz
| | Sample_contact_email | Frederic.Schutz@isb-sib.ch
| | Sample_contact_institute | Swiss Institute of Bioinformatics
| | Sample_contact_address | Batiment Genopode
| | Sample_contact_city | Lausanne
| | Sample_contact_zip/postal_code | 1015
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1065nnn/GSM1065879/suppl/GSM1065879_ps_tamox_refed_5.CEL.gz
| | Sample_series_id | GSE43581
| | Sample_data_row_count | 45101
| | |
|
GSM1065880 | GPL1261 |
|
tamox_refed_rep3
|
Liver RNA from fasted/refed LG2KO (tamoxifen treated) mouse
|
tissue: liver
strain: SV129XC57Bl/6
genotype: LG2KO
diet: fasted/refed
|
|
| Sample_geo_accession | GSM1065880
| | Sample_status | Public on Jan 18 2013
| | Sample_submission_date | Jan 17 2013
| | Sample_last_update_date | Jan 18 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Liver RNAs were extracted using Trifast reagent (Peqlab). For each group, 3 pools of RNA from 3 animals were prepared.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | The synthesis of cRNA was performed using the GeneChip® One-Cycle cDNA Synthesis according to the manufacturer' protocol (Affymetrix, Santa Clara, CA, USA). Labeling, hybridization and scanning of the samples were performed as described by Affymetrix (www.affymetrix.com).
| | Sample_hyb_protocol | Affymetrix Mouse Genome 430 2.0 arrays were hybridized with 11 microgramme of labeled, amplified cRNA , washed, stained and scanned according to the protocol described in Affymetrix GeneChip® Expression Analysis Manual (Fluidics protocol EukGeWS2v5_450)
| | Sample_scan_protocol | Scanning was done on an Affymetrix GeneChip Scanner 7G
| | Sample_data_processing | Normalized expression signals were calculated from Affymetrix CEL files using RMA (Irizarry et al., 2003).
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Frédéric,,Schütz
| | Sample_contact_email | Frederic.Schutz@isb-sib.ch
| | Sample_contact_institute | Swiss Institute of Bioinformatics
| | Sample_contact_address | Batiment Genopode
| | Sample_contact_city | Lausanne
| | Sample_contact_zip/postal_code | 1015
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1065nnn/GSM1065880/suppl/GSM1065880_ps_tamox_refed_6.CEL.gz
| | Sample_series_id | GSE43581
| | Sample_data_row_count | 45101
| | |
|
GSM1065881 | GPL1261 |
|
control_fasted_rep1
|
Liver RNA from fasted control mouse
|
tissue: liver
strain: SV129XC57Bl/6
genotype: control
diet: fasted
|
|
| Sample_geo_accession | GSM1065881
| | Sample_status | Public on Jan 18 2013
| | Sample_submission_date | Jan 17 2013
| | Sample_last_update_date | Jan 18 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Liver RNAs were extracted using Trifast reagent (Peqlab). For each group, 3 pools of RNA from 3 animals were prepared.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | The synthesis of cRNA was performed using the GeneChip® One-Cycle cDNA Synthesis according to the manufacturer' protocol (Affymetrix, Santa Clara, CA, USA). Labeling, hybridization and scanning of the samples were performed as described by Affymetrix (www.affymetrix.com).
| | Sample_hyb_protocol | Affymetrix Mouse Genome 430 2.0 arrays were hybridized with 11 microgramme of labeled, amplified cRNA , washed, stained and scanned according to the protocol described in Affymetrix GeneChip® Expression Analysis Manual (Fluidics protocol EukGeWS2v5_450)
| | Sample_scan_protocol | Scanning was done on an Affymetrix GeneChip Scanner 7G
| | Sample_data_processing | Normalized expression signals were calculated from Affymetrix CEL files using RMA (Irizarry et al., 2003).
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Frédéric,,Schütz
| | Sample_contact_email | Frederic.Schutz@isb-sib.ch
| | Sample_contact_institute | Swiss Institute of Bioinformatics
| | Sample_contact_address | Batiment Genopode
| | Sample_contact_city | Lausanne
| | Sample_contact_zip/postal_code | 1015
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1065nnn/GSM1065881/suppl/GSM1065881_ps_ctrl_fasted_7.CEL.gz
| | Sample_series_id | GSE43581
| | Sample_data_row_count | 45101
| | |
|
GSM1065882 | GPL1261 |
|
control_fasted_rep2
|
Liver RNA from fasted control mouse
|
tissue: liver
strain: SV129XC57Bl/6
genotype: control
diet: fasted
|
|
| Sample_geo_accession | GSM1065882
| | Sample_status | Public on Jan 18 2013
| | Sample_submission_date | Jan 17 2013
| | Sample_last_update_date | Jan 18 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Liver RNAs were extracted using Trifast reagent (Peqlab). For each group, 3 pools of RNA from 3 animals were prepared.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | The synthesis of cRNA was performed using the GeneChip® One-Cycle cDNA Synthesis according to the manufacturer' protocol (Affymetrix, Santa Clara, CA, USA). Labeling, hybridization and scanning of the samples were performed as described by Affymetrix (www.affymetrix.com).
| | Sample_hyb_protocol | Affymetrix Mouse Genome 430 2.0 arrays were hybridized with 11 microgramme of labeled, amplified cRNA , washed, stained and scanned according to the protocol described in Affymetrix GeneChip® Expression Analysis Manual (Fluidics protocol EukGeWS2v5_450)
| | Sample_scan_protocol | Scanning was done on an Affymetrix GeneChip Scanner 7G
| | Sample_data_processing | Normalized expression signals were calculated from Affymetrix CEL files using RMA (Irizarry et al., 2003).
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Frédéric,,Schütz
| | Sample_contact_email | Frederic.Schutz@isb-sib.ch
| | Sample_contact_institute | Swiss Institute of Bioinformatics
| | Sample_contact_address | Batiment Genopode
| | Sample_contact_city | Lausanne
| | Sample_contact_zip/postal_code | 1015
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1065nnn/GSM1065882/suppl/GSM1065882_ps_ctrl_fasted_8.CEL.gz
| | Sample_series_id | GSE43581
| | Sample_data_row_count | 45101
| | |
|
GSM1065883 | GPL1261 |
|
control_fasted_rep3
|
Liver RNA from fasted control mouse
|
tissue: liver
strain: SV129XC57Bl/6
genotype: control
diet: fasted
|
|
| Sample_geo_accession | GSM1065883
| | Sample_status | Public on Jan 18 2013
| | Sample_submission_date | Jan 17 2013
| | Sample_last_update_date | Jan 18 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Liver RNAs were extracted using Trifast reagent (Peqlab). For each group, 3 pools of RNA from 3 animals were prepared.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | The synthesis of cRNA was performed using the GeneChip® One-Cycle cDNA Synthesis according to the manufacturer' protocol (Affymetrix, Santa Clara, CA, USA). Labeling, hybridization and scanning of the samples were performed as described by Affymetrix (www.affymetrix.com).
| | Sample_hyb_protocol | Affymetrix Mouse Genome 430 2.0 arrays were hybridized with 11 microgramme of labeled, amplified cRNA , washed, stained and scanned according to the protocol described in Affymetrix GeneChip® Expression Analysis Manual (Fluidics protocol EukGeWS2v5_450)
| | Sample_scan_protocol | Scanning was done on an Affymetrix GeneChip Scanner 7G
| | Sample_data_processing | Normalized expression signals were calculated from Affymetrix CEL files using RMA (Irizarry et al., 2003).
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Frédéric,,Schütz
| | Sample_contact_email | Frederic.Schutz@isb-sib.ch
| | Sample_contact_institute | Swiss Institute of Bioinformatics
| | Sample_contact_address | Batiment Genopode
| | Sample_contact_city | Lausanne
| | Sample_contact_zip/postal_code | 1015
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1065nnn/GSM1065883/suppl/GSM1065883_ps_ctrl_fasted_9.CEL.gz
| | Sample_series_id | GSE43581
| | Sample_data_row_count | 45101
| | |
|
GSM1065884 | GPL1261 |
|
tamox_fasted_rep1
|
Liver RNA from fasted/refed LG2KO (tamoxifen treated) mouse
|
tissue: liver
strain: SV129XC57Bl/6
genotype: LG2KO
diet: fasted
|
|
| Sample_geo_accession | GSM1065884
| | Sample_status | Public on Jan 18 2013
| | Sample_submission_date | Jan 17 2013
| | Sample_last_update_date | Jan 18 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Liver RNAs were extracted using Trifast reagent (Peqlab). For each group, 3 pools of RNA from 3 animals were prepared.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | The synthesis of cRNA was performed using the GeneChip® One-Cycle cDNA Synthesis according to the manufacturer' protocol (Affymetrix, Santa Clara, CA, USA). Labeling, hybridization and scanning of the samples were performed as described by Affymetrix (www.affymetrix.com).
| | Sample_hyb_protocol | Affymetrix Mouse Genome 430 2.0 arrays were hybridized with 11 microgramme of labeled, amplified cRNA , washed, stained and scanned according to the protocol described in Affymetrix GeneChip® Expression Analysis Manual (Fluidics protocol EukGeWS2v5_450)
| | Sample_scan_protocol | Scanning was done on an Affymetrix GeneChip Scanner 7G
| | Sample_data_processing | Normalized expression signals were calculated from Affymetrix CEL files using RMA (Irizarry et al., 2003).
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Frédéric,,Schütz
| | Sample_contact_email | Frederic.Schutz@isb-sib.ch
| | Sample_contact_institute | Swiss Institute of Bioinformatics
| | Sample_contact_address | Batiment Genopode
| | Sample_contact_city | Lausanne
| | Sample_contact_zip/postal_code | 1015
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1065nnn/GSM1065884/suppl/GSM1065884_ps_tamox_fasted_10.CEL.gz
| | Sample_series_id | GSE43581
| | Sample_data_row_count | 45101
| | |
|
GSM1065885 | GPL1261 |
|
tamox_fasted_rep2
|
Liver RNA from fasted/refed LG2KO (tamoxifen treated) mouse
|
tissue: liver
strain: SV129XC57Bl/6
genotype: LG2KO
diet: fasted
|
|
| Sample_geo_accession | GSM1065885
| | Sample_status | Public on Jan 18 2013
| | Sample_submission_date | Jan 17 2013
| | Sample_last_update_date | Jan 18 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Liver RNAs were extracted using Trifast reagent (Peqlab). For each group, 3 pools of RNA from 3 animals were prepared.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | The synthesis of cRNA was performed using the GeneChip® One-Cycle cDNA Synthesis according to the manufacturer' protocol (Affymetrix, Santa Clara, CA, USA). Labeling, hybridization and scanning of the samples were performed as described by Affymetrix (www.affymetrix.com).
| | Sample_hyb_protocol | Affymetrix Mouse Genome 430 2.0 arrays were hybridized with 11 microgramme of labeled, amplified cRNA , washed, stained and scanned according to the protocol described in Affymetrix GeneChip® Expression Analysis Manual (Fluidics protocol EukGeWS2v5_450)
| | Sample_scan_protocol | Scanning was done on an Affymetrix GeneChip Scanner 7G
| | Sample_data_processing | Normalized expression signals were calculated from Affymetrix CEL files using RMA (Irizarry et al., 2003).
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Frédéric,,Schütz
| | Sample_contact_email | Frederic.Schutz@isb-sib.ch
| | Sample_contact_institute | Swiss Institute of Bioinformatics
| | Sample_contact_address | Batiment Genopode
| | Sample_contact_city | Lausanne
| | Sample_contact_zip/postal_code | 1015
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1065nnn/GSM1065885/suppl/GSM1065885_ps_tamox_fasted_11.CEL.gz
| | Sample_series_id | GSE43581
| | Sample_data_row_count | 45101
| | |
|
GSM1065886 | GPL1261 |
|
tamox_fasted_rep3
|
Liver RNA from fasted/refed LG2KO (tamoxifen treated) mouse
|
tissue: liver
strain: SV129XC57Bl/6
genotype: LG2KO
diet: fasted
|
|
| Sample_geo_accession | GSM1065886
| | Sample_status | Public on Jan 18 2013
| | Sample_submission_date | Jan 17 2013
| | Sample_last_update_date | Jan 18 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Liver RNAs were extracted using Trifast reagent (Peqlab). For each group, 3 pools of RNA from 3 animals were prepared.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | The synthesis of cRNA was performed using the GeneChip® One-Cycle cDNA Synthesis according to the manufacturer' protocol (Affymetrix, Santa Clara, CA, USA). Labeling, hybridization and scanning of the samples were performed as described by Affymetrix (www.affymetrix.com).
| | Sample_hyb_protocol | Affymetrix Mouse Genome 430 2.0 arrays were hybridized with 11 microgramme of labeled, amplified cRNA , washed, stained and scanned according to the protocol described in Affymetrix GeneChip® Expression Analysis Manual (Fluidics protocol EukGeWS2v5_450)
| | Sample_scan_protocol | Scanning was done on an Affymetrix GeneChip Scanner 7G
| | Sample_data_processing | Normalized expression signals were calculated from Affymetrix CEL files using RMA (Irizarry et al., 2003).
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Frédéric,,Schütz
| | Sample_contact_email | Frederic.Schutz@isb-sib.ch
| | Sample_contact_institute | Swiss Institute of Bioinformatics
| | Sample_contact_address | Batiment Genopode
| | Sample_contact_city | Lausanne
| | Sample_contact_zip/postal_code | 1015
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1065nnn/GSM1065886/suppl/GSM1065886_ps_tamox_fasted_12.CEL.gz
| | Sample_series_id | GSE43581
| | Sample_data_row_count | 45101
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