Search results for the GEO ID: GSE43591  |
(Click on the check boxes provided under "Select for analysis", to initiate grouping) |
(Once the selection is made, click on "Add groups" in "Make groups for comparison", to make a group. Scroll down) |
|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM1066005 | GPL570 |
|
peripheral blood T-cells mRNA Control1
|
peripheral blood T-cell
|
disease state: Control
cell type: peripheral blood T-cells
|
gene expression data from T-cell
|
| Sample_geo_accession | GSM1066005
| | Sample_status | Public on Aug 02 2013
| | Sample_submission_date | Jan 17 2013
| | Sample_last_update_date | Aug 02 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were snap frozen in -80 C
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was prepared using Chomczynski's method (Anal Biochem 162, 156-9 (1987))
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 3 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation,15 ug of cRNA were hybridized for 16 hr at 45C on Human U133 Plus 2.0 arrays. Arrays were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | After hybridisation (according to the Minimum Information About a Microarray Experiment guideline, the arrays were scanned using an Affymetrix confocal laser scanner (Affymetrix, GeneArray scanner GCS3000) and visualised using GeneChip Operating Software (GCOS, Affymetrix).
| | Sample_data_processing | The raw expression signals were preprocessed following the method of Probe Logarithmic Intensity Error (PLIER) based on perfect match only (pm-only) calculation (Affymetrix).The robust quantile method was applied to get normalized expression values using the Affymetrix software expression console.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Intawat,,Nookaew
| | Sample_contact_email | intawat@chalmers.se
| | Sample_contact_department | Department of Chemical and Biological Engineering
| | Sample_contact_institute | Chalmers University of Technology
| | Sample_contact_address | Kemivägen 10
| | Sample_contact_city | Göteborg
| | Sample_contact_zip/postal_code | SE-412 96
| | Sample_contact_country | Sweden
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1066nnn/GSM1066005/suppl/GSM1066005_MSK1.CEL.gz
| | Sample_series_id | GSE43591
| | Sample_series_id | GSE43592
| | Sample_data_row_count | 54675
| | |
|
GSM1066006 | GPL570 |
|
peripheral blood T-cells mRNA Control10
|
peripheral blood T-cell
|
disease state: Control
cell type: peripheral blood T-cells
|
gene expression data from T-cell
|
| Sample_geo_accession | GSM1066006
| | Sample_status | Public on Aug 02 2013
| | Sample_submission_date | Jan 17 2013
| | Sample_last_update_date | Aug 02 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were snap frozen in -80 C
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was prepared using Chomczynski's method (Anal Biochem 162, 156-9 (1987))
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 3 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation,15 ug of cRNA were hybridized for 16 hr at 45C on Human U133 Plus 2.0 arrays. Arrays were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | After hybridisation (according to the Minimum Information About a Microarray Experiment guideline, the arrays were scanned using an Affymetrix confocal laser scanner (Affymetrix, GeneArray scanner GCS3000) and visualised using GeneChip Operating Software (GCOS, Affymetrix).
| | Sample_data_processing | The raw expression signals were preprocessed following the method of Probe Logarithmic Intensity Error (PLIER) based on perfect match only (pm-only) calculation (Affymetrix).The robust quantile method was applied to get normalized expression values using the Affymetrix software expression console.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Intawat,,Nookaew
| | Sample_contact_email | intawat@chalmers.se
| | Sample_contact_department | Department of Chemical and Biological Engineering
| | Sample_contact_institute | Chalmers University of Technology
| | Sample_contact_address | Kemivägen 10
| | Sample_contact_city | Göteborg
| | Sample_contact_zip/postal_code | SE-412 96
| | Sample_contact_country | Sweden
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1066nnn/GSM1066006/suppl/GSM1066006_MSK10.CEL.gz
| | Sample_series_id | GSE43591
| | Sample_series_id | GSE43592
| | Sample_data_row_count | 54675
| | |
|
GSM1066007 | GPL570 |
|
peripheral blood T-cells mRNA Control2
|
peripheral blood T-cell
|
disease state: Control
cell type: peripheral blood T-cells
|
gene expression data from T-cell
|
| Sample_geo_accession | GSM1066007
| | Sample_status | Public on Aug 02 2013
| | Sample_submission_date | Jan 17 2013
| | Sample_last_update_date | Aug 02 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were snap frozen in -80 C
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was prepared using Chomczynski's method (Anal Biochem 162, 156-9 (1987))
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 3 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation,15 ug of cRNA were hybridized for 16 hr at 45C on Human U133 Plus 2.0 arrays. Arrays were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | After hybridisation (according to the Minimum Information About a Microarray Experiment guideline, the arrays were scanned using an Affymetrix confocal laser scanner (Affymetrix, GeneArray scanner GCS3000) and visualised using GeneChip Operating Software (GCOS, Affymetrix).
| | Sample_data_processing | The raw expression signals were preprocessed following the method of Probe Logarithmic Intensity Error (PLIER) based on perfect match only (pm-only) calculation (Affymetrix).The robust quantile method was applied to get normalized expression values using the Affymetrix software expression console.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Intawat,,Nookaew
| | Sample_contact_email | intawat@chalmers.se
| | Sample_contact_department | Department of Chemical and Biological Engineering
| | Sample_contact_institute | Chalmers University of Technology
| | Sample_contact_address | Kemivägen 10
| | Sample_contact_city | Göteborg
| | Sample_contact_zip/postal_code | SE-412 96
| | Sample_contact_country | Sweden
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1066nnn/GSM1066007/suppl/GSM1066007_MSK2.CEL.gz
| | Sample_series_id | GSE43591
| | Sample_series_id | GSE43592
| | Sample_data_row_count | 54675
| | |
|
GSM1066008 | GPL570 |
|
peripheral blood T-cells mRNA Control3
|
peripheral blood T-cell
|
disease state: Control
cell type: peripheral blood T-cells
|
gene expression data from T-cell
|
| Sample_geo_accession | GSM1066008
| | Sample_status | Public on Aug 02 2013
| | Sample_submission_date | Jan 17 2013
| | Sample_last_update_date | Aug 02 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were snap frozen in -80 C
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was prepared using Chomczynski's method (Anal Biochem 162, 156-9 (1987))
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 3 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation,15 ug of cRNA were hybridized for 16 hr at 45C on Human U133 Plus 2.0 arrays. Arrays were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | After hybridisation (according to the Minimum Information About a Microarray Experiment guideline, the arrays were scanned using an Affymetrix confocal laser scanner (Affymetrix, GeneArray scanner GCS3000) and visualised using GeneChip Operating Software (GCOS, Affymetrix).
| | Sample_data_processing | The raw expression signals were preprocessed following the method of Probe Logarithmic Intensity Error (PLIER) based on perfect match only (pm-only) calculation (Affymetrix).The robust quantile method was applied to get normalized expression values using the Affymetrix software expression console.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Intawat,,Nookaew
| | Sample_contact_email | intawat@chalmers.se
| | Sample_contact_department | Department of Chemical and Biological Engineering
| | Sample_contact_institute | Chalmers University of Technology
| | Sample_contact_address | Kemivägen 10
| | Sample_contact_city | Göteborg
| | Sample_contact_zip/postal_code | SE-412 96
| | Sample_contact_country | Sweden
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1066nnn/GSM1066008/suppl/GSM1066008_MSK3.CEL.gz
| | Sample_series_id | GSE43591
| | Sample_series_id | GSE43592
| | Sample_data_row_count | 54675
| | |
|
GSM1066009 | GPL570 |
|
peripheral blood T-cells mRNA Control4
|
peripheral blood T-cell
|
disease state: Control
cell type: peripheral blood T-cells
|
gene expression data from T-cell
|
| Sample_geo_accession | GSM1066009
| | Sample_status | Public on Aug 02 2013
| | Sample_submission_date | Jan 17 2013
| | Sample_last_update_date | Aug 02 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were snap frozen in -80 C
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was prepared using Chomczynski's method (Anal Biochem 162, 156-9 (1987))
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 3 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation,15 ug of cRNA were hybridized for 16 hr at 45C on Human U133 Plus 2.0 arrays. Arrays were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | After hybridisation (according to the Minimum Information About a Microarray Experiment guideline, the arrays were scanned using an Affymetrix confocal laser scanner (Affymetrix, GeneArray scanner GCS3000) and visualised using GeneChip Operating Software (GCOS, Affymetrix).
| | Sample_data_processing | The raw expression signals were preprocessed following the method of Probe Logarithmic Intensity Error (PLIER) based on perfect match only (pm-only) calculation (Affymetrix).The robust quantile method was applied to get normalized expression values using the Affymetrix software expression console.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Intawat,,Nookaew
| | Sample_contact_email | intawat@chalmers.se
| | Sample_contact_department | Department of Chemical and Biological Engineering
| | Sample_contact_institute | Chalmers University of Technology
| | Sample_contact_address | Kemivägen 10
| | Sample_contact_city | Göteborg
| | Sample_contact_zip/postal_code | SE-412 96
| | Sample_contact_country | Sweden
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1066nnn/GSM1066009/suppl/GSM1066009_MSK4.CEL.gz
| | Sample_series_id | GSE43591
| | Sample_series_id | GSE43592
| | Sample_data_row_count | 54675
| | |
|
GSM1066010 | GPL570 |
|
peripheral blood T-cells mRNA Control5
|
peripheral blood T-cell
|
disease state: Control
cell type: peripheral blood T-cells
|
gene expression data from T-cell
|
| Sample_geo_accession | GSM1066010
| | Sample_status | Public on Aug 02 2013
| | Sample_submission_date | Jan 17 2013
| | Sample_last_update_date | Aug 02 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were snap frozen in -80 C
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was prepared using Chomczynski's method (Anal Biochem 162, 156-9 (1987))
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 3 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation,15 ug of cRNA were hybridized for 16 hr at 45C on Human U133 Plus 2.0 arrays. Arrays were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | After hybridisation (according to the Minimum Information About a Microarray Experiment guideline, the arrays were scanned using an Affymetrix confocal laser scanner (Affymetrix, GeneArray scanner GCS3000) and visualised using GeneChip Operating Software (GCOS, Affymetrix).
| | Sample_data_processing | The raw expression signals were preprocessed following the method of Probe Logarithmic Intensity Error (PLIER) based on perfect match only (pm-only) calculation (Affymetrix).The robust quantile method was applied to get normalized expression values using the Affymetrix software expression console.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Intawat,,Nookaew
| | Sample_contact_email | intawat@chalmers.se
| | Sample_contact_department | Department of Chemical and Biological Engineering
| | Sample_contact_institute | Chalmers University of Technology
| | Sample_contact_address | Kemivägen 10
| | Sample_contact_city | Göteborg
| | Sample_contact_zip/postal_code | SE-412 96
| | Sample_contact_country | Sweden
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1066nnn/GSM1066010/suppl/GSM1066010_MSK5.CEL.gz
| | Sample_series_id | GSE43591
| | Sample_series_id | GSE43592
| | Sample_data_row_count | 54675
| | |
|
GSM1066011 | GPL570 |
|
peripheral blood T-cells mRNA Control6
|
peripheral blood T-cell
|
disease state: Control
cell type: peripheral blood T-cells
|
gene expression data from T-cell
|
| Sample_geo_accession | GSM1066011
| | Sample_status | Public on Aug 02 2013
| | Sample_submission_date | Jan 17 2013
| | Sample_last_update_date | Aug 02 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were snap frozen in -80 C
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was prepared using Chomczynski's method (Anal Biochem 162, 156-9 (1987))
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 3 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation,15 ug of cRNA were hybridized for 16 hr at 45C on Human U133 Plus 2.0 arrays. Arrays were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | After hybridisation (according to the Minimum Information About a Microarray Experiment guideline, the arrays were scanned using an Affymetrix confocal laser scanner (Affymetrix, GeneArray scanner GCS3000) and visualised using GeneChip Operating Software (GCOS, Affymetrix).
| | Sample_data_processing | The raw expression signals were preprocessed following the method of Probe Logarithmic Intensity Error (PLIER) based on perfect match only (pm-only) calculation (Affymetrix).The robust quantile method was applied to get normalized expression values using the Affymetrix software expression console.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Intawat,,Nookaew
| | Sample_contact_email | intawat@chalmers.se
| | Sample_contact_department | Department of Chemical and Biological Engineering
| | Sample_contact_institute | Chalmers University of Technology
| | Sample_contact_address | Kemivägen 10
| | Sample_contact_city | Göteborg
| | Sample_contact_zip/postal_code | SE-412 96
| | Sample_contact_country | Sweden
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1066nnn/GSM1066011/suppl/GSM1066011_MSK6.CEL.gz
| | Sample_series_id | GSE43591
| | Sample_series_id | GSE43592
| | Sample_data_row_count | 54675
| | |
|
GSM1066012 | GPL570 |
|
peripheral blood T-cells mRNA Control7
|
peripheral blood T-cell
|
disease state: Control
cell type: peripheral blood T-cells
|
gene expression data from T-cell
|
| Sample_geo_accession | GSM1066012
| | Sample_status | Public on Aug 02 2013
| | Sample_submission_date | Jan 17 2013
| | Sample_last_update_date | Aug 02 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were snap frozen in -80 C
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was prepared using Chomczynski's method (Anal Biochem 162, 156-9 (1987))
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 3 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation,15 ug of cRNA were hybridized for 16 hr at 45C on Human U133 Plus 2.0 arrays. Arrays were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | After hybridisation (according to the Minimum Information About a Microarray Experiment guideline, the arrays were scanned using an Affymetrix confocal laser scanner (Affymetrix, GeneArray scanner GCS3000) and visualised using GeneChip Operating Software (GCOS, Affymetrix).
| | Sample_data_processing | The raw expression signals were preprocessed following the method of Probe Logarithmic Intensity Error (PLIER) based on perfect match only (pm-only) calculation (Affymetrix).The robust quantile method was applied to get normalized expression values using the Affymetrix software expression console.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Intawat,,Nookaew
| | Sample_contact_email | intawat@chalmers.se
| | Sample_contact_department | Department of Chemical and Biological Engineering
| | Sample_contact_institute | Chalmers University of Technology
| | Sample_contact_address | Kemivägen 10
| | Sample_contact_city | Göteborg
| | Sample_contact_zip/postal_code | SE-412 96
| | Sample_contact_country | Sweden
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1066nnn/GSM1066012/suppl/GSM1066012_MSK7.CEL.gz
| | Sample_series_id | GSE43591
| | Sample_series_id | GSE43592
| | Sample_data_row_count | 54675
| | |
|
GSM1066013 | GPL570 |
|
peripheral blood T-cells mRNA Control8
|
peripheral blood T-cell
|
disease state: Control
cell type: peripheral blood T-cells
|
gene expression data from T-cell
|
| Sample_geo_accession | GSM1066013
| | Sample_status | Public on Aug 02 2013
| | Sample_submission_date | Jan 17 2013
| | Sample_last_update_date | Aug 02 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were snap frozen in -80 C
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was prepared using Chomczynski's method (Anal Biochem 162, 156-9 (1987))
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 3 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation,15 ug of cRNA were hybridized for 16 hr at 45C on Human U133 Plus 2.0 arrays. Arrays were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | After hybridisation (according to the Minimum Information About a Microarray Experiment guideline, the arrays were scanned using an Affymetrix confocal laser scanner (Affymetrix, GeneArray scanner GCS3000) and visualised using GeneChip Operating Software (GCOS, Affymetrix).
| | Sample_data_processing | The raw expression signals were preprocessed following the method of Probe Logarithmic Intensity Error (PLIER) based on perfect match only (pm-only) calculation (Affymetrix).The robust quantile method was applied to get normalized expression values using the Affymetrix software expression console.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Intawat,,Nookaew
| | Sample_contact_email | intawat@chalmers.se
| | Sample_contact_department | Department of Chemical and Biological Engineering
| | Sample_contact_institute | Chalmers University of Technology
| | Sample_contact_address | Kemivägen 10
| | Sample_contact_city | Göteborg
| | Sample_contact_zip/postal_code | SE-412 96
| | Sample_contact_country | Sweden
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1066nnn/GSM1066013/suppl/GSM1066013_MSK8.CEL.gz
| | Sample_series_id | GSE43591
| | Sample_series_id | GSE43592
| | Sample_data_row_count | 54675
| | |
|
GSM1066014 | GPL570 |
|
peripheral blood T-cells mRNA Control9
|
peripheral blood T-cell
|
disease state: Control
cell type: peripheral blood T-cells
|
gene expression data from T-cell
|
| Sample_geo_accession | GSM1066014
| | Sample_status | Public on Aug 02 2013
| | Sample_submission_date | Jan 17 2013
| | Sample_last_update_date | Aug 02 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were snap frozen in -80 C
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was prepared using Chomczynski's method (Anal Biochem 162, 156-9 (1987))
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 3 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation,15 ug of cRNA were hybridized for 16 hr at 45C on Human U133 Plus 2.0 arrays. Arrays were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | After hybridisation (according to the Minimum Information About a Microarray Experiment guideline, the arrays were scanned using an Affymetrix confocal laser scanner (Affymetrix, GeneArray scanner GCS3000) and visualised using GeneChip Operating Software (GCOS, Affymetrix).
| | Sample_data_processing | The raw expression signals were preprocessed following the method of Probe Logarithmic Intensity Error (PLIER) based on perfect match only (pm-only) calculation (Affymetrix).The robust quantile method was applied to get normalized expression values using the Affymetrix software expression console.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Intawat,,Nookaew
| | Sample_contact_email | intawat@chalmers.se
| | Sample_contact_department | Department of Chemical and Biological Engineering
| | Sample_contact_institute | Chalmers University of Technology
| | Sample_contact_address | Kemivägen 10
| | Sample_contact_city | Göteborg
| | Sample_contact_zip/postal_code | SE-412 96
| | Sample_contact_country | Sweden
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1066nnn/GSM1066014/suppl/GSM1066014_MSK9.CEL.gz
| | Sample_series_id | GSE43591
| | Sample_series_id | GSE43592
| | Sample_data_row_count | 54675
| | |
|
GSM1066015 | GPL570 |
|
peripheral blood T-cells mRNA Patient10
|
peripheral blood T-cell
|
disease state: multiple sclerosis
cell type: peripheral blood T-cells
|
gene expression data from T-cell
|
| Sample_geo_accession | GSM1066015
| | Sample_status | Public on Aug 02 2013
| | Sample_submission_date | Jan 17 2013
| | Sample_last_update_date | Aug 02 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were snap frozen in -80 C
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was prepared using Chomczynski's method (Anal Biochem 162, 156-9 (1987))
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 3 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation,15 ug of cRNA were hybridized for 16 hr at 45C on Human U133 Plus 2.0 arrays. Arrays were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | After hybridisation (according to the Minimum Information About a Microarray Experiment guideline, the arrays were scanned using an Affymetrix confocal laser scanner (Affymetrix, GeneArray scanner GCS3000) and visualised using GeneChip Operating Software (GCOS, Affymetrix).
| | Sample_data_processing | The raw expression signals were preprocessed following the method of Probe Logarithmic Intensity Error (PLIER) based on perfect match only (pm-only) calculation (Affymetrix).The robust quantile method was applied to get normalized expression values using the Affymetrix software expression console.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Intawat,,Nookaew
| | Sample_contact_email | intawat@chalmers.se
| | Sample_contact_department | Department of Chemical and Biological Engineering
| | Sample_contact_institute | Chalmers University of Technology
| | Sample_contact_address | Kemivägen 10
| | Sample_contact_city | Göteborg
| | Sample_contact_zip/postal_code | SE-412 96
| | Sample_contact_country | Sweden
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1066nnn/GSM1066015/suppl/GSM1066015_MSR1.CEL.gz
| | Sample_series_id | GSE43591
| | Sample_series_id | GSE43592
| | Sample_data_row_count | 54675
| | |
|
GSM1066016 | GPL570 |
|
peripheral blood T-cells mRNA Patient1
|
peripheral blood T-cell
|
disease state: multiple sclerosis
cell type: peripheral blood T-cells
|
gene expression data from T-cell
|
| Sample_geo_accession | GSM1066016
| | Sample_status | Public on Aug 02 2013
| | Sample_submission_date | Jan 17 2013
| | Sample_last_update_date | Aug 02 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were snap frozen in -80 C
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was prepared using Chomczynski's method (Anal Biochem 162, 156-9 (1987))
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 3 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation,15 ug of cRNA were hybridized for 16 hr at 45C on Human U133 Plus 2.0 arrays. Arrays were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | After hybridisation (according to the Minimum Information About a Microarray Experiment guideline, the arrays were scanned using an Affymetrix confocal laser scanner (Affymetrix, GeneArray scanner GCS3000) and visualised using GeneChip Operating Software (GCOS, Affymetrix).
| | Sample_data_processing | The raw expression signals were preprocessed following the method of Probe Logarithmic Intensity Error (PLIER) based on perfect match only (pm-only) calculation (Affymetrix).The robust quantile method was applied to get normalized expression values using the Affymetrix software expression console.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Intawat,,Nookaew
| | Sample_contact_email | intawat@chalmers.se
| | Sample_contact_department | Department of Chemical and Biological Engineering
| | Sample_contact_institute | Chalmers University of Technology
| | Sample_contact_address | Kemivägen 10
| | Sample_contact_city | Göteborg
| | Sample_contact_zip/postal_code | SE-412 96
| | Sample_contact_country | Sweden
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1066nnn/GSM1066016/suppl/GSM1066016_MSR10.CEL.gz
| | Sample_series_id | GSE43591
| | Sample_series_id | GSE43592
| | Sample_data_row_count | 54675
| | |
|
GSM1066017 | GPL570 |
|
peripheral blood T-cells mRNA Patient2
|
peripheral blood T-cell
|
disease state: multiple sclerosis
cell type: peripheral blood T-cells
|
gene expression data from T-cell
|
| Sample_geo_accession | GSM1066017
| | Sample_status | Public on Aug 02 2013
| | Sample_submission_date | Jan 17 2013
| | Sample_last_update_date | Aug 02 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were snap frozen in -80 C
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was prepared using Chomczynski's method (Anal Biochem 162, 156-9 (1987))
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 3 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation,15 ug of cRNA were hybridized for 16 hr at 45C on Human U133 Plus 2.0 arrays. Arrays were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | After hybridisation (according to the Minimum Information About a Microarray Experiment guideline, the arrays were scanned using an Affymetrix confocal laser scanner (Affymetrix, GeneArray scanner GCS3000) and visualised using GeneChip Operating Software (GCOS, Affymetrix).
| | Sample_data_processing | The raw expression signals were preprocessed following the method of Probe Logarithmic Intensity Error (PLIER) based on perfect match only (pm-only) calculation (Affymetrix).The robust quantile method was applied to get normalized expression values using the Affymetrix software expression console.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Intawat,,Nookaew
| | Sample_contact_email | intawat@chalmers.se
| | Sample_contact_department | Department of Chemical and Biological Engineering
| | Sample_contact_institute | Chalmers University of Technology
| | Sample_contact_address | Kemivägen 10
| | Sample_contact_city | Göteborg
| | Sample_contact_zip/postal_code | SE-412 96
| | Sample_contact_country | Sweden
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1066nnn/GSM1066017/suppl/GSM1066017_MSR2.CEL.gz
| | Sample_series_id | GSE43591
| | Sample_series_id | GSE43592
| | Sample_data_row_count | 54675
| | |
|
GSM1066018 | GPL570 |
|
peripheral blood T-cells mRNA Patient3
|
peripheral blood T-cell
|
disease state: multiple sclerosis
cell type: peripheral blood T-cells
|
gene expression data from T-cell
|
| Sample_geo_accession | GSM1066018
| | Sample_status | Public on Aug 02 2013
| | Sample_submission_date | Jan 17 2013
| | Sample_last_update_date | Aug 02 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were snap frozen in -80 C
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was prepared using Chomczynski's method (Anal Biochem 162, 156-9 (1987))
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 3 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation,15 ug of cRNA were hybridized for 16 hr at 45C on Human U133 Plus 2.0 arrays. Arrays were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | After hybridisation (according to the Minimum Information About a Microarray Experiment guideline, the arrays were scanned using an Affymetrix confocal laser scanner (Affymetrix, GeneArray scanner GCS3000) and visualised using GeneChip Operating Software (GCOS, Affymetrix).
| | Sample_data_processing | The raw expression signals were preprocessed following the method of Probe Logarithmic Intensity Error (PLIER) based on perfect match only (pm-only) calculation (Affymetrix).The robust quantile method was applied to get normalized expression values using the Affymetrix software expression console.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Intawat,,Nookaew
| | Sample_contact_email | intawat@chalmers.se
| | Sample_contact_department | Department of Chemical and Biological Engineering
| | Sample_contact_institute | Chalmers University of Technology
| | Sample_contact_address | Kemivägen 10
| | Sample_contact_city | Göteborg
| | Sample_contact_zip/postal_code | SE-412 96
| | Sample_contact_country | Sweden
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1066nnn/GSM1066018/suppl/GSM1066018_MSR3.CEL.gz
| | Sample_series_id | GSE43591
| | Sample_series_id | GSE43592
| | Sample_data_row_count | 54675
| | |
|
GSM1066019 | GPL570 |
|
peripheral blood T-cells mRNA Patient4
|
peripheral blood T-cell
|
disease state: multiple sclerosis
cell type: peripheral blood T-cells
|
gene expression data from T-cell
|
| Sample_geo_accession | GSM1066019
| | Sample_status | Public on Aug 02 2013
| | Sample_submission_date | Jan 17 2013
| | Sample_last_update_date | Aug 02 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were snap frozen in -80 C
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was prepared using Chomczynski's method (Anal Biochem 162, 156-9 (1987))
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 3 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation,15 ug of cRNA were hybridized for 16 hr at 45C on Human U133 Plus 2.0 arrays. Arrays were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | After hybridisation (according to the Minimum Information About a Microarray Experiment guideline, the arrays were scanned using an Affymetrix confocal laser scanner (Affymetrix, GeneArray scanner GCS3000) and visualised using GeneChip Operating Software (GCOS, Affymetrix).
| | Sample_data_processing | The raw expression signals were preprocessed following the method of Probe Logarithmic Intensity Error (PLIER) based on perfect match only (pm-only) calculation (Affymetrix).The robust quantile method was applied to get normalized expression values using the Affymetrix software expression console.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Intawat,,Nookaew
| | Sample_contact_email | intawat@chalmers.se
| | Sample_contact_department | Department of Chemical and Biological Engineering
| | Sample_contact_institute | Chalmers University of Technology
| | Sample_contact_address | Kemivägen 10
| | Sample_contact_city | Göteborg
| | Sample_contact_zip/postal_code | SE-412 96
| | Sample_contact_country | Sweden
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1066nnn/GSM1066019/suppl/GSM1066019_MSR4.CEL.gz
| | Sample_series_id | GSE43591
| | Sample_series_id | GSE43592
| | Sample_data_row_count | 54675
| | |
|
GSM1066020 | GPL570 |
|
peripheral blood T-cells mRNA Patient5
|
peripheral blood T-cell
|
disease state: multiple sclerosis
cell type: peripheral blood T-cells
|
gene expression data from T-cell
|
| Sample_geo_accession | GSM1066020
| | Sample_status | Public on Aug 02 2013
| | Sample_submission_date | Jan 17 2013
| | Sample_last_update_date | Aug 02 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were snap frozen in -80 C
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was prepared using Chomczynski's method (Anal Biochem 162, 156-9 (1987))
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 3 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation,15 ug of cRNA were hybridized for 16 hr at 45C on Human U133 Plus 2.0 arrays. Arrays were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | After hybridisation (according to the Minimum Information About a Microarray Experiment guideline, the arrays were scanned using an Affymetrix confocal laser scanner (Affymetrix, GeneArray scanner GCS3000) and visualised using GeneChip Operating Software (GCOS, Affymetrix).
| | Sample_data_processing | The raw expression signals were preprocessed following the method of Probe Logarithmic Intensity Error (PLIER) based on perfect match only (pm-only) calculation (Affymetrix).The robust quantile method was applied to get normalized expression values using the Affymetrix software expression console.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Intawat,,Nookaew
| | Sample_contact_email | intawat@chalmers.se
| | Sample_contact_department | Department of Chemical and Biological Engineering
| | Sample_contact_institute | Chalmers University of Technology
| | Sample_contact_address | Kemivägen 10
| | Sample_contact_city | Göteborg
| | Sample_contact_zip/postal_code | SE-412 96
| | Sample_contact_country | Sweden
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1066nnn/GSM1066020/suppl/GSM1066020_MSR5.CEL.gz
| | Sample_series_id | GSE43591
| | Sample_series_id | GSE43592
| | Sample_data_row_count | 54675
| | |
|
GSM1066021 | GPL570 |
|
peripheral blood T-cells mRNA Patient6
|
peripheral blood T-cell
|
disease state: multiple sclerosis
cell type: peripheral blood T-cells
|
gene expression data from T-cell
|
| Sample_geo_accession | GSM1066021
| | Sample_status | Public on Aug 02 2013
| | Sample_submission_date | Jan 17 2013
| | Sample_last_update_date | Aug 02 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were snap frozen in -80 C
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was prepared using Chomczynski's method (Anal Biochem 162, 156-9 (1987))
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 3 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation,15 ug of cRNA were hybridized for 16 hr at 45C on Human U133 Plus 2.0 arrays. Arrays were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | After hybridisation (according to the Minimum Information About a Microarray Experiment guideline, the arrays were scanned using an Affymetrix confocal laser scanner (Affymetrix, GeneArray scanner GCS3000) and visualised using GeneChip Operating Software (GCOS, Affymetrix).
| | Sample_data_processing | The raw expression signals were preprocessed following the method of Probe Logarithmic Intensity Error (PLIER) based on perfect match only (pm-only) calculation (Affymetrix).The robust quantile method was applied to get normalized expression values using the Affymetrix software expression console.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Intawat,,Nookaew
| | Sample_contact_email | intawat@chalmers.se
| | Sample_contact_department | Department of Chemical and Biological Engineering
| | Sample_contact_institute | Chalmers University of Technology
| | Sample_contact_address | Kemivägen 10
| | Sample_contact_city | Göteborg
| | Sample_contact_zip/postal_code | SE-412 96
| | Sample_contact_country | Sweden
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1066nnn/GSM1066021/suppl/GSM1066021_MSR6.CEL.gz
| | Sample_series_id | GSE43591
| | Sample_series_id | GSE43592
| | Sample_data_row_count | 54675
| | |
|
GSM1066022 | GPL570 |
|
peripheral blood T-cells mRNA Patient7
|
peripheral blood T-cell
|
disease state: multiple sclerosis
cell type: peripheral blood T-cells
|
gene expression data from T-cell
|
| Sample_geo_accession | GSM1066022
| | Sample_status | Public on Aug 02 2013
| | Sample_submission_date | Jan 17 2013
| | Sample_last_update_date | Aug 02 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were snap frozen in -80 C
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was prepared using Chomczynski's method (Anal Biochem 162, 156-9 (1987))
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 3 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation,15 ug of cRNA were hybridized for 16 hr at 45C on Human U133 Plus 2.0 arrays. Arrays were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | After hybridisation (according to the Minimum Information About a Microarray Experiment guideline, the arrays were scanned using an Affymetrix confocal laser scanner (Affymetrix, GeneArray scanner GCS3000) and visualised using GeneChip Operating Software (GCOS, Affymetrix).
| | Sample_data_processing | The raw expression signals were preprocessed following the method of Probe Logarithmic Intensity Error (PLIER) based on perfect match only (pm-only) calculation (Affymetrix).The robust quantile method was applied to get normalized expression values using the Affymetrix software expression console.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Intawat,,Nookaew
| | Sample_contact_email | intawat@chalmers.se
| | Sample_contact_department | Department of Chemical and Biological Engineering
| | Sample_contact_institute | Chalmers University of Technology
| | Sample_contact_address | Kemivägen 10
| | Sample_contact_city | Göteborg
| | Sample_contact_zip/postal_code | SE-412 96
| | Sample_contact_country | Sweden
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1066nnn/GSM1066022/suppl/GSM1066022_MSR7.CEL.gz
| | Sample_series_id | GSE43591
| | Sample_series_id | GSE43592
| | Sample_data_row_count | 54675
| | |
|
GSM1066023 | GPL570 |
|
peripheral blood T-cells mRNA Patient8
|
peripheral blood T-cell
|
disease state: multiple sclerosis
cell type: peripheral blood T-cells
|
gene expression data from T-cell
|
| Sample_geo_accession | GSM1066023
| | Sample_status | Public on Aug 02 2013
| | Sample_submission_date | Jan 17 2013
| | Sample_last_update_date | Aug 02 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were snap frozen in -80 C
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was prepared using Chomczynski's method (Anal Biochem 162, 156-9 (1987))
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 3 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation,15 ug of cRNA were hybridized for 16 hr at 45C on Human U133 Plus 2.0 arrays. Arrays were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | After hybridisation (according to the Minimum Information About a Microarray Experiment guideline, the arrays were scanned using an Affymetrix confocal laser scanner (Affymetrix, GeneArray scanner GCS3000) and visualised using GeneChip Operating Software (GCOS, Affymetrix).
| | Sample_data_processing | The raw expression signals were preprocessed following the method of Probe Logarithmic Intensity Error (PLIER) based on perfect match only (pm-only) calculation (Affymetrix).The robust quantile method was applied to get normalized expression values using the Affymetrix software expression console.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Intawat,,Nookaew
| | Sample_contact_email | intawat@chalmers.se
| | Sample_contact_department | Department of Chemical and Biological Engineering
| | Sample_contact_institute | Chalmers University of Technology
| | Sample_contact_address | Kemivägen 10
| | Sample_contact_city | Göteborg
| | Sample_contact_zip/postal_code | SE-412 96
| | Sample_contact_country | Sweden
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1066nnn/GSM1066023/suppl/GSM1066023_MSR8.CEL.gz
| | Sample_series_id | GSE43591
| | Sample_series_id | GSE43592
| | Sample_data_row_count | 54675
| | |
|
GSM1066024 | GPL570 |
|
peripheral blood T-cells mRNA Patient9
|
peripheral blood T-cell
|
disease state: multiple sclerosis
cell type: peripheral blood T-cells
|
gene expression data from T-cell
|
| Sample_geo_accession | GSM1066024
| | Sample_status | Public on Aug 02 2013
| | Sample_submission_date | Jan 17 2013
| | Sample_last_update_date | Aug 02 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were snap frozen in -80 C
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was prepared using Chomczynski's method (Anal Biochem 162, 156-9 (1987))
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 3 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation,15 ug of cRNA were hybridized for 16 hr at 45C on Human U133 Plus 2.0 arrays. Arrays were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | After hybridisation (according to the Minimum Information About a Microarray Experiment guideline, the arrays were scanned using an Affymetrix confocal laser scanner (Affymetrix, GeneArray scanner GCS3000) and visualised using GeneChip Operating Software (GCOS, Affymetrix).
| | Sample_data_processing | The raw expression signals were preprocessed following the method of Probe Logarithmic Intensity Error (PLIER) based on perfect match only (pm-only) calculation (Affymetrix).The robust quantile method was applied to get normalized expression values using the Affymetrix software expression console.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Intawat,,Nookaew
| | Sample_contact_email | intawat@chalmers.se
| | Sample_contact_department | Department of Chemical and Biological Engineering
| | Sample_contact_institute | Chalmers University of Technology
| | Sample_contact_address | Kemivägen 10
| | Sample_contact_city | Göteborg
| | Sample_contact_zip/postal_code | SE-412 96
| | Sample_contact_country | Sweden
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1066nnn/GSM1066024/suppl/GSM1066024_MSR9.CEL.gz
| | Sample_series_id | GSE43591
| | Sample_series_id | GSE43592
| | Sample_data_row_count | 54675
| | |
|
| |
| |
Make groups for comparisons |
(2 groups will be compared at a time) |
|
| Select GSMs and click on "Add groups" |
Enter the group name here: |
|
|
|
