Result

Search results for the GEO ID: GSE43744

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GSM ID

GPL ID

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Title

Source name

Description

Characteristics

GSM1070148

GPL1355

Peri-implant soft tissue 1

Tooth extraction and implant placement

strain: Sprague Dawley gender: male treatment: Tooth extraction and implant placement tissue: peri-implant soft tissue

Gene expression data from peri-implant soft tissue

Sample_geo_accession	GSM1070148
Sample_status	Public on Jan 24 2013
Sample_submission_date	Jan 24 2013
Sample_last_update_date	Jan 24 2013
Sample_type	RNA
Sample_channel_count	1
Sample_organism_ch1	Rattus norvegicus
Sample_taxid_ch1	10116
Sample_treatment_protocol_ch1	Both side upper first molars of rats were extracted and titanium alloy implants were placed only in the left extraction socket. Four weeks after surgery, peri-implant soft tissue from the left side and oral mucosal tissue from the site of healing after tooth extraction on the right side were harvested under a dissecting microscope.
Sample_growth_protocol_ch1	Four-week-old male Sprague-Dawley rats were obtained from Japan SLC Inc.( Tokyo, Japan). After surgery the animals were housed in a room with controlled temperature and humidity and a 12 h light dark cycle and given freely water and diet until sacrificed after 4 weeks.
Sample_molecule_ch1	total RNA
Sample_extract_protocol_ch1	Total RNA was extracted from peri-implant soft tissue and oral mucosal tissue using an RNeasy® Mini kit (QIAGEN, Alameda, CA, USA) according to the manufacturer’s instructions.
Sample_label_ch1	biotin
Sample_label_protocol_ch1	Total RNA were amplified, labeled and purified by using GeneChip 3’IVT Express Kit (Affymetrix, Santa Clara, CA, US) according to the manufacturer’s instructions to obtain biotin labeled aRNA.
Sample_hyb_protocol	Following fragmentation, aRNA products (15 μg) were hybridized on GeneChip® Rat Genome 230 2.0 Array Chips (Affymetrix) for 16 h at 45°C in a GeneChip® Hybridization Oven 640 (Affymetrix).
Sample_scan_protocol	Hybridized arrays were washed and stained by using a Gene Chip® Fluidics station 450 (Affymetrix), and the images were scanned by using a Genechip® scanner 3,000 (Affymetrix).
Sample_data_processing	CEL files were generated using the GeneChip® Operating Software version 1.2 (Affymetrix). Data analysis and normalization were performed using GeneSpring® GX software version 12 (Agilent Technologies, Foster City, CA, USA).
Sample_platform_id	GPL1355
Sample_contact_name	Hodaka,,Sasaki
Sample_contact_email	hosasaki@tdc.ac.jp
Sample_contact_phone	+81-43-270-3573
Sample_contact_fax	+81-43-270-3574
Sample_contact_department	Dept. of Oral and Maxillofacial Implantology
Sample_contact_institute	Tokyo Dental College
Sample_contact_address	1-2-2, Masago, Mihama-ku
Sample_contact_city	Chiba
Sample_contact_zip/postal_code	261-8502
Sample_contact_country	Japan
Sample_supplementary_file	ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1070nnn/GSM1070148/suppl/GSM1070148_Rat-PIST_1.CEL.gz
Sample_series_id	GSE43744
Sample_data_row_count	31099

GSM1070150

GPL1355

Peri-implant soft tissue 2

Tooth extraction and implant placement

strain: Sprague Dawley gender: male treatment: Tooth extraction and implant placement tissue: peri-implant soft tissue

Gene expression data from peri-implant soft tissue

Sample_geo_accession	GSM1070150
Sample_status	Public on Jan 24 2013
Sample_submission_date	Jan 24 2013
Sample_last_update_date	Jan 24 2013
Sample_type	RNA
Sample_channel_count	1
Sample_organism_ch1	Rattus norvegicus
Sample_taxid_ch1	10116
Sample_treatment_protocol_ch1	Both side upper first molars of rats were extracted and titanium alloy implants were placed only in the left extraction socket. Four weeks after surgery, peri-implant soft tissue from the left side and oral mucosal tissue from the site of healing after tooth extraction on the right side were harvested under a dissecting microscope.
Sample_growth_protocol_ch1	Four-week-old male Sprague-Dawley rats were obtained from Japan SLC Inc.( Tokyo, Japan). After surgery the animals were housed in a room with controlled temperature and humidity and a 12 h light dark cycle and given freely water and diet until sacrificed after 4 weeks.
Sample_molecule_ch1	total RNA
Sample_extract_protocol_ch1	Total RNA was extracted from peri-implant soft tissue and oral mucosal tissue using an RNeasy® Mini kit (QIAGEN, Alameda, CA, USA) according to the manufacturer’s instructions.
Sample_label_ch1	biotin
Sample_label_protocol_ch1	Total RNA were amplified, labeled and purified by using GeneChip 3’IVT Express Kit (Affymetrix, Santa Clara, CA, US) according to the manufacturer’s instructions to obtain biotin labeled aRNA.
Sample_hyb_protocol	Following fragmentation, aRNA products (15 μg) were hybridized on GeneChip® Rat Genome 230 2.0 Array Chips (Affymetrix) for 16 h at 45°C in a GeneChip® Hybridization Oven 640 (Affymetrix).
Sample_scan_protocol	Hybridized arrays were washed and stained by using a Gene Chip® Fluidics station 450 (Affymetrix), and the images were scanned by using a Genechip® scanner 3,000 (Affymetrix).
Sample_data_processing	CEL files were generated using the GeneChip® Operating Software version 1.2 (Affymetrix). Data analysis and normalization were performed using GeneSpring® GX software version 12 (Agilent Technologies, Foster City, CA, USA).
Sample_platform_id	GPL1355
Sample_contact_name	Hodaka,,Sasaki
Sample_contact_email	hosasaki@tdc.ac.jp
Sample_contact_phone	+81-43-270-3573
Sample_contact_fax	+81-43-270-3574
Sample_contact_department	Dept. of Oral and Maxillofacial Implantology
Sample_contact_institute	Tokyo Dental College
Sample_contact_address	1-2-2, Masago, Mihama-ku
Sample_contact_city	Chiba
Sample_contact_zip/postal_code	261-8502
Sample_contact_country	Japan
Sample_supplementary_file	ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1070nnn/GSM1070150/suppl/GSM1070150_Rat-PIST_2.CEL.gz
Sample_series_id	GSE43744
Sample_data_row_count	31099

GSM1070152

GPL1355

Peri-implant soft tissue 3

Tooth extraction and implant placement

strain: Sprague Dawley gender: male treatment: Tooth extraction and implant placement tissue: peri-implant soft tissue

Gene expression data from peri-implant soft tissue

Sample_geo_accession	GSM1070152
Sample_status	Public on Jan 24 2013
Sample_submission_date	Jan 24 2013
Sample_last_update_date	Jan 24 2013
Sample_type	RNA
Sample_channel_count	1
Sample_organism_ch1	Rattus norvegicus
Sample_taxid_ch1	10116
Sample_treatment_protocol_ch1	Both side upper first molars of rats were extracted and titanium alloy implants were placed only in the left extraction socket. Four weeks after surgery, peri-implant soft tissue from the left side and oral mucosal tissue from the site of healing after tooth extraction on the right side were harvested under a dissecting microscope.
Sample_growth_protocol_ch1	Four-week-old male Sprague-Dawley rats were obtained from Japan SLC Inc.( Tokyo, Japan). After surgery the animals were housed in a room with controlled temperature and humidity and a 12 h light dark cycle and given freely water and diet until sacrificed after 4 weeks.
Sample_molecule_ch1	total RNA
Sample_extract_protocol_ch1	Total RNA was extracted from peri-implant soft tissue and oral mucosal tissue using an RNeasy® Mini kit (QIAGEN, Alameda, CA, USA) according to the manufacturer’s instructions.
Sample_label_ch1	biotin
Sample_label_protocol_ch1	Total RNA were amplified, labeled and purified by using GeneChip 3’IVT Express Kit (Affymetrix, Santa Clara, CA, US) according to the manufacturer’s instructions to obtain biotin labeled aRNA.
Sample_hyb_protocol	Following fragmentation, aRNA products (15 μg) were hybridized on GeneChip® Rat Genome 230 2.0 Array Chips (Affymetrix) for 16 h at 45°C in a GeneChip® Hybridization Oven 640 (Affymetrix).
Sample_scan_protocol	Hybridized arrays were washed and stained by using a Gene Chip® Fluidics station 450 (Affymetrix), and the images were scanned by using a Genechip® scanner 3,000 (Affymetrix).
Sample_data_processing	CEL files were generated using the GeneChip® Operating Software version 1.2 (Affymetrix). Data analysis and normalization were performed using GeneSpring® GX software version 12 (Agilent Technologies, Foster City, CA, USA).
Sample_platform_id	GPL1355
Sample_contact_name	Hodaka,,Sasaki
Sample_contact_email	hosasaki@tdc.ac.jp
Sample_contact_phone	+81-43-270-3573
Sample_contact_fax	+81-43-270-3574
Sample_contact_department	Dept. of Oral and Maxillofacial Implantology
Sample_contact_institute	Tokyo Dental College
Sample_contact_address	1-2-2, Masago, Mihama-ku
Sample_contact_city	Chiba
Sample_contact_zip/postal_code	261-8502
Sample_contact_country	Japan
Sample_supplementary_file	ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1070nnn/GSM1070152/suppl/GSM1070152_Rat-PIST_3.CEL.gz
Sample_series_id	GSE43744
Sample_data_row_count	31099

GSM1070153

GPL1355

Oral mucosal tissue 1

Tooth extraction only

strain: Sprague Dawley gender: male treatment: Tooth extraction only tissue: oral mucosal tissue

Gene expression data from oral mucosal tissue

Sample_geo_accession	GSM1070153
Sample_status	Public on Jan 24 2013
Sample_submission_date	Jan 24 2013
Sample_last_update_date	Jan 24 2013
Sample_type	RNA
Sample_channel_count	1
Sample_organism_ch1	Rattus norvegicus
Sample_taxid_ch1	10116
Sample_treatment_protocol_ch1	Both side upper first molars of rats were extracted and titanium alloy implants were placed only in the left extraction socket. Four weeks after surgery, peri-implant soft tissue from the left side and oral mucosal tissue from the site of healing after tooth extraction on the right side were harvested under a dissecting microscope.
Sample_growth_protocol_ch1	Four-week-old male Sprague-Dawley rats were obtained from Japan SLC Inc.( Tokyo, Japan). After surgery the animals were housed in a room with controlled temperature and humidity and a 12 h light dark cycle and given freely water and diet until sacrificed after 4 weeks.
Sample_molecule_ch1	total RNA
Sample_extract_protocol_ch1	Total RNA was extracted from peri-implant soft tissue and oral mucosal tissue using an RNeasy® Mini kit (QIAGEN, Alameda, CA, USA) according to the manufacturer’s instructions.
Sample_label_ch1	biotin
Sample_label_protocol_ch1	Total RNA were amplified, labeled and purified by using GeneChip 3’IVT Express Kit (Affymetrix, Santa Clara, CA, US) according to the manufacturer’s instructions to obtain biotin labeled aRNA.
Sample_hyb_protocol	Following fragmentation, aRNA products (15 μg) were hybridized on GeneChip® Rat Genome 230 2.0 Array Chips (Affymetrix) for 16 h at 45°C in a GeneChip® Hybridization Oven 640 (Affymetrix).
Sample_scan_protocol	Hybridized arrays were washed and stained by using a Gene Chip® Fluidics station 450 (Affymetrix), and the images were scanned by using a Genechip® scanner 3,000 (Affymetrix).
Sample_data_processing	CEL files were generated using the GeneChip® Operating Software version 1.2 (Affymetrix). Data analysis and normalization were performed using GeneSpring® GX software version 12 (Agilent Technologies, Foster City, CA, USA).
Sample_platform_id	GPL1355
Sample_contact_name	Hodaka,,Sasaki
Sample_contact_email	hosasaki@tdc.ac.jp
Sample_contact_phone	+81-43-270-3573
Sample_contact_fax	+81-43-270-3574
Sample_contact_department	Dept. of Oral and Maxillofacial Implantology
Sample_contact_institute	Tokyo Dental College
Sample_contact_address	1-2-2, Masago, Mihama-ku
Sample_contact_city	Chiba
Sample_contact_zip/postal_code	261-8502
Sample_contact_country	Japan
Sample_supplementary_file	ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1070nnn/GSM1070153/suppl/GSM1070153_Rat-OMT_1.CEL.gz
Sample_series_id	GSE43744
Sample_data_row_count	31099

GSM1070155

GPL1355

Oral mucosal tissue 2

Tooth extraction only

strain: Sprague Dawley gender: male treatment: Tooth extraction only tissue: oral mucosal tissue

Gene expression data from oral mucosal tissue

Sample_geo_accession	GSM1070155
Sample_status	Public on Jan 24 2013
Sample_submission_date	Jan 24 2013
Sample_last_update_date	Jan 24 2013
Sample_type	RNA
Sample_channel_count	1
Sample_organism_ch1	Rattus norvegicus
Sample_taxid_ch1	10116
Sample_treatment_protocol_ch1	Both side upper first molars of rats were extracted and titanium alloy implants were placed only in the left extraction socket. Four weeks after surgery, peri-implant soft tissue from the left side and oral mucosal tissue from the site of healing after tooth extraction on the right side were harvested under a dissecting microscope.
Sample_growth_protocol_ch1	Four-week-old male Sprague-Dawley rats were obtained from Japan SLC Inc.( Tokyo, Japan). After surgery the animals were housed in a room with controlled temperature and humidity and a 12 h light dark cycle and given freely water and diet until sacrificed after 4 weeks.
Sample_molecule_ch1	total RNA
Sample_extract_protocol_ch1	Total RNA was extracted from peri-implant soft tissue and oral mucosal tissue using an RNeasy® Mini kit (QIAGEN, Alameda, CA, USA) according to the manufacturer’s instructions.
Sample_label_ch1	biotin
Sample_label_protocol_ch1	Total RNA were amplified, labeled and purified by using GeneChip 3’IVT Express Kit (Affymetrix, Santa Clara, CA, US) according to the manufacturer’s instructions to obtain biotin labeled aRNA.
Sample_hyb_protocol	Following fragmentation, aRNA products (15 μg) were hybridized on GeneChip® Rat Genome 230 2.0 Array Chips (Affymetrix) for 16 h at 45°C in a GeneChip® Hybridization Oven 640 (Affymetrix).
Sample_scan_protocol	Hybridized arrays were washed and stained by using a Gene Chip® Fluidics station 450 (Affymetrix), and the images were scanned by using a Genechip® scanner 3,000 (Affymetrix).
Sample_data_processing	CEL files were generated using the GeneChip® Operating Software version 1.2 (Affymetrix). Data analysis and normalization were performed using GeneSpring® GX software version 12 (Agilent Technologies, Foster City, CA, USA).
Sample_platform_id	GPL1355
Sample_contact_name	Hodaka,,Sasaki
Sample_contact_email	hosasaki@tdc.ac.jp
Sample_contact_phone	+81-43-270-3573
Sample_contact_fax	+81-43-270-3574
Sample_contact_department	Dept. of Oral and Maxillofacial Implantology
Sample_contact_institute	Tokyo Dental College
Sample_contact_address	1-2-2, Masago, Mihama-ku
Sample_contact_city	Chiba
Sample_contact_zip/postal_code	261-8502
Sample_contact_country	Japan
Sample_supplementary_file	ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1070nnn/GSM1070155/suppl/GSM1070155_Rat-OMT_2.CEL.gz
Sample_series_id	GSE43744
Sample_data_row_count	31099

GSM1070156

GPL1355

Oral mucosal tissue 3

Tooth extraction only

strain: Sprague Dawley gender: male treatment: Tooth extraction only tissue: oral mucosal tissue

Gene expression data from oral mucosal tissue

Sample_geo_accession	GSM1070156
Sample_status	Public on Jan 24 2013
Sample_submission_date	Jan 24 2013
Sample_last_update_date	Jan 24 2013
Sample_type	RNA
Sample_channel_count	1
Sample_organism_ch1	Rattus norvegicus
Sample_taxid_ch1	10116
Sample_treatment_protocol_ch1	Both side upper first molars of rats were extracted and titanium alloy implants were placed only in the left extraction socket. Four weeks after surgery, peri-implant soft tissue from the left side and oral mucosal tissue from the site of healing after tooth extraction on the right side were harvested under a dissecting microscope.
Sample_growth_protocol_ch1	Four-week-old male Sprague-Dawley rats were obtained from Japan SLC Inc.( Tokyo, Japan). After surgery the animals were housed in a room with controlled temperature and humidity and a 12 h light dark cycle and given freely water and diet until sacrificed after 4 weeks.
Sample_molecule_ch1	total RNA
Sample_extract_protocol_ch1	Total RNA was extracted from peri-implant soft tissue and oral mucosal tissue using an RNeasy® Mini kit (QIAGEN, Alameda, CA, USA) according to the manufacturer’s instructions.
Sample_label_ch1	biotin
Sample_label_protocol_ch1	Total RNA were amplified, labeled and purified by using GeneChip 3’IVT Express Kit (Affymetrix, Santa Clara, CA, US) according to the manufacturer’s instructions to obtain biotin labeled aRNA.
Sample_hyb_protocol	Following fragmentation, aRNA products (15 μg) were hybridized on GeneChip® Rat Genome 230 2.0 Array Chips (Affymetrix) for 16 h at 45°C in a GeneChip® Hybridization Oven 640 (Affymetrix).
Sample_scan_protocol	Hybridized arrays were washed and stained by using a Gene Chip® Fluidics station 450 (Affymetrix), and the images were scanned by using a Genechip® scanner 3,000 (Affymetrix).
Sample_data_processing	CEL files were generated using the GeneChip® Operating Software version 1.2 (Affymetrix). Data analysis and normalization were performed using GeneSpring® GX software version 12 (Agilent Technologies, Foster City, CA, USA).
Sample_platform_id	GPL1355
Sample_contact_name	Hodaka,,Sasaki
Sample_contact_email	hosasaki@tdc.ac.jp
Sample_contact_phone	+81-43-270-3573
Sample_contact_fax	+81-43-270-3574
Sample_contact_department	Dept. of Oral and Maxillofacial Implantology
Sample_contact_institute	Tokyo Dental College
Sample_contact_address	1-2-2, Masago, Mihama-ku
Sample_contact_city	Chiba
Sample_contact_zip/postal_code	261-8502
Sample_contact_country	Japan
Sample_supplementary_file	ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1070nnn/GSM1070156/suppl/GSM1070156_Rat-OMT_3.CEL.gz
Sample_series_id	GSE43744
Sample_data_row_count	31099

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