Search results for the GEO ID: GSE43779  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM1071176 | GPL1261 |
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control biological rep1
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mouse without 2-AA treatment
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tissue: gastrocnemius muscles
strain: CD-1
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Gene expression data from mouse without 2-AA treatment
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| Sample_geo_accession | GSM1071176
| | Sample_status | Public on Jan 28 2013
| | Sample_submission_date | Jan 25 2013
| | Sample_last_update_date | Jan 28 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Mice were injected intra-peritoneally (IP) with 100µl of 2-AA (6.75 mg /kg mice), and mouse skeletal muscle was analyzed 4 days post 2-AA treatment.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol® isolation method for RNA extraction.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was generated with 10 µg of total cellular RNA according to the protocol outlined by Affymetrix Inc.
| | Sample_hyb_protocol | cRNA was hybridized onto MOE430A oligonucleotide arrays (Affymetrix, CA, USA)
| | Sample_scan_protocol | MOE430A oligonucleotide arrays (Affymetrix, CA, USA) according to to the Affymetrix protocol
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Laurence,G,Rahme
| | Sample_contact_email | rahme@molbio.mgh.harvard.edu
| | Sample_contact_phone | 617-724-5003
| | Sample_contact_fax | 617-724-8558
| | Sample_contact_department | Surgery
| | Sample_contact_institute | Massachusetts General Hospital
| | Sample_contact_address | 50 Blosson St, Thier 340
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02114
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1071nnn/GSM1071176/suppl/GSM1071176_Rahme_04-06-10_control_replicate_1.CEL.gz
| | Sample_series_id | GSE43779
| | Sample_data_row_count | 45101
| | |
|
GSM1071177 | GPL1261 |
|
control biological rep2
|
mouse without 2-AA treatment
|
tissue: gastrocnemius muscles
strain: CD-1
|
Gene expression data from mouse without 2-AA treatment
|
| Sample_geo_accession | GSM1071177
| | Sample_status | Public on Jan 28 2013
| | Sample_submission_date | Jan 25 2013
| | Sample_last_update_date | Jan 28 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Mice were injected intra-peritoneally (IP) with 100µl of 2-AA (6.75 mg /kg mice), and mouse skeletal muscle was analyzed 4 days post 2-AA treatment.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol® isolation method for RNA extraction.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was generated with 10 µg of total cellular RNA according to the protocol outlined by Affymetrix Inc.
| | Sample_hyb_protocol | cRNA was hybridized onto MOE430A oligonucleotide arrays (Affymetrix, CA, USA)
| | Sample_scan_protocol | MOE430A oligonucleotide arrays (Affymetrix, CA, USA) according to to the Affymetrix protocol
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Laurence,G,Rahme
| | Sample_contact_email | rahme@molbio.mgh.harvard.edu
| | Sample_contact_phone | 617-724-5003
| | Sample_contact_fax | 617-724-8558
| | Sample_contact_department | Surgery
| | Sample_contact_institute | Massachusetts General Hospital
| | Sample_contact_address | 50 Blosson St, Thier 340
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02114
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1071nnn/GSM1071177/suppl/GSM1071177_Rahme_04-06-10_control_replicate_2.CEL.gz
| | Sample_series_id | GSE43779
| | Sample_data_row_count | 45101
| | |
|
GSM1071178 | GPL1261 |
|
control biological rep3
|
mouse without 2-AA treatment
|
tissue: gastrocnemius muscles
strain: CD-1
|
Gene expression data from mouse without 2-AA treatment
|
| Sample_geo_accession | GSM1071178
| | Sample_status | Public on Jan 28 2013
| | Sample_submission_date | Jan 25 2013
| | Sample_last_update_date | Jan 28 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Mice were injected intra-peritoneally (IP) with 100µl of 2-AA (6.75 mg /kg mice), and mouse skeletal muscle was analyzed 4 days post 2-AA treatment.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol® isolation method for RNA extraction.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was generated with 10 µg of total cellular RNA according to the protocol outlined by Affymetrix Inc.
| | Sample_hyb_protocol | cRNA was hybridized onto MOE430A oligonucleotide arrays (Affymetrix, CA, USA)
| | Sample_scan_protocol | MOE430A oligonucleotide arrays (Affymetrix, CA, USA) according to to the Affymetrix protocol
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Laurence,G,Rahme
| | Sample_contact_email | rahme@molbio.mgh.harvard.edu
| | Sample_contact_phone | 617-724-5003
| | Sample_contact_fax | 617-724-8558
| | Sample_contact_department | Surgery
| | Sample_contact_institute | Massachusetts General Hospital
| | Sample_contact_address | 50 Blosson St, Thier 340
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02114
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1071nnn/GSM1071178/suppl/GSM1071178_Rahme_04-06-10_control_replicate_3.CEL.gz
| | Sample_series_id | GSE43779
| | Sample_data_row_count | 45101
| | |
|
GSM1071180 | GPL1261 |
|
2-AA treatment biological rep2
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2-AA treated mouse for 4 days
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tissue: gastrocnemius muscles
strain: CD-1
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Gene expression data from 2-AA treated mouse
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| Sample_geo_accession | GSM1071180
| | Sample_status | Public on Jan 28 2013
| | Sample_submission_date | Jan 25 2013
| | Sample_last_update_date | Jan 28 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Mice were injected intra-peritoneally (IP) with 100µl of 2-AA (6.75 mg /kg mice), and mouse skeletal muscle was analyzed 4 days post 2-AA treatment.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol® isolation method for RNA extraction.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was generated with 10 µg of total cellular RNA according to the protocol outlined by Affymetrix Inc.
| | Sample_hyb_protocol | cRNA was hybridized onto MOE430A oligonucleotide arrays (Affymetrix, CA, USA)
| | Sample_scan_protocol | MOE430A oligonucleotide arrays (Affymetrix, CA, USA) according to to the Affymetrix protocol
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Laurence,G,Rahme
| | Sample_contact_email | rahme@molbio.mgh.harvard.edu
| | Sample_contact_phone | 617-724-5003
| | Sample_contact_fax | 617-724-8558
| | Sample_contact_department | Surgery
| | Sample_contact_institute | Massachusetts General Hospital
| | Sample_contact_address | 50 Blosson St, Thier 340
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02114
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1071nnn/GSM1071180/suppl/GSM1071180_Rahme_04-06-10_2-AA_treated_muscle_4D_replicate_2.CEL.gz
| | Sample_series_id | GSE43779
| | Sample_data_row_count | 45101
| | |
|
GSM1071181 | GPL1261 |
|
2-AA treatment biological rep3
|
2-AA treated mouse for 4 days
|
tissue: gastrocnemius muscles
strain: CD-1
|
Gene expression data from 2-AA treated mouse
|
| Sample_geo_accession | GSM1071181
| | Sample_status | Public on Jan 28 2013
| | Sample_submission_date | Jan 25 2013
| | Sample_last_update_date | Jan 28 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Mice were injected intra-peritoneally (IP) with 100µl of 2-AA (6.75 mg /kg mice), and mouse skeletal muscle was analyzed 4 days post 2-AA treatment.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol® isolation method for RNA extraction.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was generated with 10 µg of total cellular RNA according to the protocol outlined by Affymetrix Inc.
| | Sample_hyb_protocol | cRNA was hybridized onto MOE430A oligonucleotide arrays (Affymetrix, CA, USA)
| | Sample_scan_protocol | MOE430A oligonucleotide arrays (Affymetrix, CA, USA) according to to the Affymetrix protocol
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Laurence,G,Rahme
| | Sample_contact_email | rahme@molbio.mgh.harvard.edu
| | Sample_contact_phone | 617-724-5003
| | Sample_contact_fax | 617-724-8558
| | Sample_contact_department | Surgery
| | Sample_contact_institute | Massachusetts General Hospital
| | Sample_contact_address | 50 Blosson St, Thier 340
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02114
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1071nnn/GSM1071181/suppl/GSM1071181_Rahme_04-06-10_2-AA_treated_muscle_4D_replicate_3.CEL.gz
| | Sample_series_id | GSE43779
| | Sample_data_row_count | 45101
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