Search results for the GEO ID: GSE43923  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM1074461 | GPL570 |
|
Articular Cartilage 1
|
articular cartilage from knee joint after total knee arthroplasty
|
disease: osteoarthritis
tissue: articular cartilage
|
A1.CEL
|
| Sample_geo_accession | GSM1074461
| | Sample_status | Public on Jan 31 2013
| | Sample_submission_date | Jan 30 2013
| | Sample_last_update_date | Jan 31 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNeasy extraction of mRNA was performed according to the manufacturer's instructions. A total of 15 different donors were used. Three paired sets of mRNA preparations of articular and osteophytic cartilage each of 5 donors in equal quantities were used for analysis.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G3000A.
| | Sample_data_processing | The data were analyzed with Partek Genomics Suite 6.0 and GCRMA as normalization method. After ANOVA differential expressed gene list are generated.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Arif,B,Ekici
| | Sample_contact_email | arif.ekici@uk-erlangen.de
| | Sample_contact_institute | Institute of Human Genetics
| | Sample_contact_address | Schwabachanlage 10
| | Sample_contact_city | Erlangen
| | Sample_contact_zip/postal_code | 91054
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1074nnn/GSM1074461/suppl/GSM1074461_A1.CEL.gz
| | Sample_series_id | GSE43923
| | Sample_data_row_count | 54675
| | |
|
GSM1074462 | GPL570 |
|
Articular Cartilage 2
|
articular cartilage from knee joint after total knee arthroplasty
|
disease: osteoarthritis
tissue: articular cartilage
|
A2.CEL
|
| Sample_geo_accession | GSM1074462
| | Sample_status | Public on Jan 31 2013
| | Sample_submission_date | Jan 30 2013
| | Sample_last_update_date | Jan 31 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNeasy extraction of mRNA was performed according to the manufacturer's instructions. A total of 15 different donors were used. Three paired sets of mRNA preparations of articular and osteophytic cartilage each of 5 donors in equal quantities were used for analysis.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G3000A.
| | Sample_data_processing | The data were analyzed with Partek Genomics Suite 6.0 and GCRMA as normalization method. After ANOVA differential expressed gene list are generated.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Arif,B,Ekici
| | Sample_contact_email | arif.ekici@uk-erlangen.de
| | Sample_contact_institute | Institute of Human Genetics
| | Sample_contact_address | Schwabachanlage 10
| | Sample_contact_city | Erlangen
| | Sample_contact_zip/postal_code | 91054
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1074nnn/GSM1074462/suppl/GSM1074462_A2.CEL.gz
| | Sample_series_id | GSE43923
| | Sample_data_row_count | 54675
| | |
|
GSM1074463 | GPL570 |
|
Articular Cartilage 3
|
articular cartilage from knee joint after total knee arthroplasty
|
disease: osteoarthritis
tissue: articular cartilage
|
A3.CEL
|
| Sample_geo_accession | GSM1074463
| | Sample_status | Public on Jan 31 2013
| | Sample_submission_date | Jan 30 2013
| | Sample_last_update_date | Jan 31 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNeasy extraction of mRNA was performed according to the manufacturer's instructions. A total of 15 different donors were used. Three paired sets of mRNA preparations of articular and osteophytic cartilage each of 5 donors in equal quantities were used for analysis.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G3000A.
| | Sample_data_processing | The data were analyzed with Partek Genomics Suite 6.0 and GCRMA as normalization method. After ANOVA differential expressed gene list are generated.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Arif,B,Ekici
| | Sample_contact_email | arif.ekici@uk-erlangen.de
| | Sample_contact_institute | Institute of Human Genetics
| | Sample_contact_address | Schwabachanlage 10
| | Sample_contact_city | Erlangen
| | Sample_contact_zip/postal_code | 91054
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1074nnn/GSM1074463/suppl/GSM1074463_A3.CEL.gz
| | Sample_series_id | GSE43923
| | Sample_data_row_count | 54675
| | |
|
GSM1074464 | GPL570 |
|
Osteophytic Cartilage 1
|
osteophytic cartilage from knee joint after total knee arthroplasty
|
disease: osteoarthritis
tissue: osteophytic cartilage
|
O1.CEL
|
| Sample_geo_accession | GSM1074464
| | Sample_status | Public on Jan 31 2013
| | Sample_submission_date | Jan 30 2013
| | Sample_last_update_date | Jan 31 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNeasy extraction of mRNA was performed according to the manufacturer's instructions. A total of 15 different donors were used. Three paired sets of mRNA preparations of articular and osteophytic cartilage each of 5 donors in equal quantities were used for analysis.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G3000A.
| | Sample_data_processing | The data were analyzed with Partek Genomics Suite 6.0 and GCRMA as normalization method. After ANOVA differential expressed gene list are generated.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Arif,B,Ekici
| | Sample_contact_email | arif.ekici@uk-erlangen.de
| | Sample_contact_institute | Institute of Human Genetics
| | Sample_contact_address | Schwabachanlage 10
| | Sample_contact_city | Erlangen
| | Sample_contact_zip/postal_code | 91054
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1074nnn/GSM1074464/suppl/GSM1074464_O1.CEL.gz
| | Sample_series_id | GSE43923
| | Sample_data_row_count | 54675
| | |
|
GSM1074465 | GPL570 |
|
Osteophytic Cartilage 2
|
osteophytic cartilage from knee joint after total knee arthroplasty
|
disease: osteoarthritis
tissue: osteophytic cartilage
|
O2.CEL
|
| Sample_geo_accession | GSM1074465
| | Sample_status | Public on Jan 31 2013
| | Sample_submission_date | Jan 30 2013
| | Sample_last_update_date | Jan 31 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNeasy extraction of mRNA was performed according to the manufacturer's instructions. A total of 15 different donors were used. Three paired sets of mRNA preparations of articular and osteophytic cartilage each of 5 donors in equal quantities were used for analysis.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G3000A.
| | Sample_data_processing | The data were analyzed with Partek Genomics Suite 6.0 and GCRMA as normalization method. After ANOVA differential expressed gene list are generated.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Arif,B,Ekici
| | Sample_contact_email | arif.ekici@uk-erlangen.de
| | Sample_contact_institute | Institute of Human Genetics
| | Sample_contact_address | Schwabachanlage 10
| | Sample_contact_city | Erlangen
| | Sample_contact_zip/postal_code | 91054
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1074nnn/GSM1074465/suppl/GSM1074465_O2.CEL.gz
| | Sample_series_id | GSE43923
| | Sample_data_row_count | 54675
| | |
|
GSM1074466 | GPL570 |
|
Osteophytic Cartilage 3
|
osteophytic cartilage from knee joint after total knee arthroplasty
|
disease: osteoarthritis
tissue: osteophytic cartilage
|
O3.CEL
|
| Sample_geo_accession | GSM1074466
| | Sample_status | Public on Jan 31 2013
| | Sample_submission_date | Jan 30 2013
| | Sample_last_update_date | Jan 31 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNeasy extraction of mRNA was performed according to the manufacturer's instructions. A total of 15 different donors were used. Three paired sets of mRNA preparations of articular and osteophytic cartilage each of 5 donors in equal quantities were used for analysis.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G3000A.
| | Sample_data_processing | The data were analyzed with Partek Genomics Suite 6.0 and GCRMA as normalization method. After ANOVA differential expressed gene list are generated.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Arif,B,Ekici
| | Sample_contact_email | arif.ekici@uk-erlangen.de
| | Sample_contact_institute | Institute of Human Genetics
| | Sample_contact_address | Schwabachanlage 10
| | Sample_contact_city | Erlangen
| | Sample_contact_zip/postal_code | 91054
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1074nnn/GSM1074466/suppl/GSM1074466_O3.CEL.gz
| | Sample_series_id | GSE43923
| | Sample_data_row_count | 54675
| | |
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