Search results for the GEO ID: GSE44029  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM1077010 | GPL570 |
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Gene expression data from SW480 cell line treated with non targeting shRNA for 4 days - replicate1
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SW480-shcontrol
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tissue: colon
cell line: colon cancer cell line SW480
genotype/variation: control
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Gene expression data from SW480/shcontrol cells
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| Sample_geo_accession | GSM1077010
| | Sample_status | Public on Feb 04 2013
| | Sample_submission_date | Feb 02 2013
| | Sample_last_update_date | Feb 04 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | no treatment
| | Sample_growth_protocol_ch1 | Human colon cancer cell line SW480 were maintained in DMEM containing 1% penicillin/streptomycin and supplemented with 10% fetal bovine serum (FBS)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Standard Affymetrix protocol
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Raw data were normalized by MAS 5.0 algorithm, Gene Spring Software (Agilent technologies, Santa Clara, CA, US).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Bai,Zhao,Fang
| | Sample_contact_email | baizf2008@hotmail.com
| | Sample_contact_phone | 86-189-1038-2132
| | Sample_contact_fax | 86-10-68186281
| | Sample_contact_institute | National Center of Biomedical Analysis
| | Sample_contact_address | 27 Tai-Ping Road
| | Sample_contact_city | Beijing
| | Sample_contact_state | Beijing
| | Sample_contact_zip/postal_code | 100850
| | Sample_contact_country | China
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1077nnn/GSM1077010/suppl/GSM1077010_CB2008129-1-1.CEL.gz
| | Sample_series_id | GSE44029
| | Sample_data_row_count | 54675
| | |
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GSM1077011 | GPL570 |
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Gene expression data from SW480 cell line treated with non targeting shRNA for 4 days - replicate2
|
SW480-shcontrol
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tissue: colon
cell line: colon cancer cell line SW480
genotype/variation: control
|
Gene expression data from SW480/shcontrol cells
|
| Sample_geo_accession | GSM1077011
| | Sample_status | Public on Feb 04 2013
| | Sample_submission_date | Feb 02 2013
| | Sample_last_update_date | Feb 04 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | no treatment
| | Sample_growth_protocol_ch1 | Human colon cancer cell line SW480 were maintained in DMEM containing 1% penicillin/streptomycin and supplemented with 10% fetal bovine serum (FBS)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Standard Affymetrix protocol
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Raw data were normalized by MAS 5.0 algorithm, Gene Spring Software (Agilent technologies, Santa Clara, CA, US).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Bai,Zhao,Fang
| | Sample_contact_email | baizf2008@hotmail.com
| | Sample_contact_phone | 86-189-1038-2132
| | Sample_contact_fax | 86-10-68186281
| | Sample_contact_institute | National Center of Biomedical Analysis
| | Sample_contact_address | 27 Tai-Ping Road
| | Sample_contact_city | Beijing
| | Sample_contact_state | Beijing
| | Sample_contact_zip/postal_code | 100850
| | Sample_contact_country | China
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1077nnn/GSM1077011/suppl/GSM1077011_CB2008129-1-2.CEL.gz
| | Sample_series_id | GSE44029
| | Sample_data_row_count | 54675
| | |
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GSM1077012 | GPL570 |
|
Gene expression data from SW480 cell line treated with non targeting shRNA for 4 days - replicate3
|
SW480-shcontrol
|
tissue: colon
cell line: colon cancer cell line SW480
genotype/variation: control
|
Gene expression data from SW480/shcontrol cells
|
| Sample_geo_accession | GSM1077012
| | Sample_status | Public on Feb 04 2013
| | Sample_submission_date | Feb 02 2013
| | Sample_last_update_date | Feb 04 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | no treatment
| | Sample_growth_protocol_ch1 | Human colon cancer cell line SW480 were maintained in DMEM containing 1% penicillin/streptomycin and supplemented with 10% fetal bovine serum (FBS)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Standard Affymetrix protocol
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Raw data were normalized by MAS 5.0 algorithm, Gene Spring Software (Agilent technologies, Santa Clara, CA, US).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Bai,Zhao,Fang
| | Sample_contact_email | baizf2008@hotmail.com
| | Sample_contact_phone | 86-189-1038-2132
| | Sample_contact_fax | 86-10-68186281
| | Sample_contact_institute | National Center of Biomedical Analysis
| | Sample_contact_address | 27 Tai-Ping Road
| | Sample_contact_city | Beijing
| | Sample_contact_state | Beijing
| | Sample_contact_zip/postal_code | 100850
| | Sample_contact_country | China
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1077nnn/GSM1077012/suppl/GSM1077012_CB2008129-1-3.CEL.gz
| | Sample_series_id | GSE44029
| | Sample_data_row_count | 54675
| | |
|
GSM1077013 | GPL570 |
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Gene expression data from Sw480 cell line treated with shRNA against gankyrin for 4 days-replicate1
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SW480-shGankyrin
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tissue: colon
cell line: colon cancer cell line SW480
genotype/variation: knockdown of Gankyrin
|
Gene expression data from SW480/shgankyrin cells
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| Sample_geo_accession | GSM1077013
| | Sample_status | Public on Feb 04 2013
| | Sample_submission_date | Feb 02 2013
| | Sample_last_update_date | Feb 04 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | no treatment
| | Sample_growth_protocol_ch1 | Human colon cancer cell line SW480 were maintained in DMEM containing 1% penicillin/streptomycin and supplemented with 10% fetal bovine serum (FBS)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Standard Affymetrix protocol
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Raw data were normalized by MAS 5.0 algorithm, Gene Spring Software (Agilent technologies, Santa Clara, CA, US).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Bai,Zhao,Fang
| | Sample_contact_email | baizf2008@hotmail.com
| | Sample_contact_phone | 86-189-1038-2132
| | Sample_contact_fax | 86-10-68186281
| | Sample_contact_institute | National Center of Biomedical Analysis
| | Sample_contact_address | 27 Tai-Ping Road
| | Sample_contact_city | Beijing
| | Sample_contact_state | Beijing
| | Sample_contact_zip/postal_code | 100850
| | Sample_contact_country | China
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1077nnn/GSM1077013/suppl/GSM1077013_CB2008129-2-1.CEL.gz
| | Sample_series_id | GSE44029
| | Sample_data_row_count | 54675
| | |
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GSM1077014 | GPL570 |
|
Gene expression data from Sw480 cell line treated with shRNA against gankyrin for 4 days-replicate2
|
SW480-shGankyrin
|
tissue: colon
cell line: colon cancer cell line SW480
genotype/variation: knockdown of Gankyrin
|
Gene expression data from SW480/shgankyrin cells
|
| Sample_geo_accession | GSM1077014
| | Sample_status | Public on Feb 04 2013
| | Sample_submission_date | Feb 02 2013
| | Sample_last_update_date | Feb 04 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | no treatment
| | Sample_growth_protocol_ch1 | Human colon cancer cell line SW480 were maintained in DMEM containing 1% penicillin/streptomycin and supplemented with 10% fetal bovine serum (FBS)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Standard Affymetrix protocol
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Raw data were normalized by MAS 5.0 algorithm, Gene Spring Software (Agilent technologies, Santa Clara, CA, US).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Bai,Zhao,Fang
| | Sample_contact_email | baizf2008@hotmail.com
| | Sample_contact_phone | 86-189-1038-2132
| | Sample_contact_fax | 86-10-68186281
| | Sample_contact_institute | National Center of Biomedical Analysis
| | Sample_contact_address | 27 Tai-Ping Road
| | Sample_contact_city | Beijing
| | Sample_contact_state | Beijing
| | Sample_contact_zip/postal_code | 100850
| | Sample_contact_country | China
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1077nnn/GSM1077014/suppl/GSM1077014_CB2008129-2-2.CEL.gz
| | Sample_series_id | GSE44029
| | Sample_data_row_count | 54675
| | |
|
GSM1077015 | GPL570 |
|
Gene expression data from Sw480 cell line treated with shRNA against gankyrin for 4 days-replicate3
|
SW480-shGankyrin
|
tissue: colon
cell line: colon cancer cell line SW480
genotype/variation: knockdown of Gankyrin
|
Gene expression data from SW480/shgankyrin cells
|
| Sample_geo_accession | GSM1077015
| | Sample_status | Public on Feb 04 2013
| | Sample_submission_date | Feb 02 2013
| | Sample_last_update_date | Feb 04 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | no treatment
| | Sample_growth_protocol_ch1 | Human colon cancer cell line SW480 were maintained in DMEM containing 1% penicillin/streptomycin and supplemented with 10% fetal bovine serum (FBS)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Standard Affymetrix protocol
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Raw data were normalized by MAS 5.0 algorithm, Gene Spring Software (Agilent technologies, Santa Clara, CA, US).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Bai,Zhao,Fang
| | Sample_contact_email | baizf2008@hotmail.com
| | Sample_contact_phone | 86-189-1038-2132
| | Sample_contact_fax | 86-10-68186281
| | Sample_contact_institute | National Center of Biomedical Analysis
| | Sample_contact_address | 27 Tai-Ping Road
| | Sample_contact_city | Beijing
| | Sample_contact_state | Beijing
| | Sample_contact_zip/postal_code | 100850
| | Sample_contact_country | China
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1077nnn/GSM1077015/suppl/GSM1077015_CB2008129-2-3.CEL.gz
| | Sample_series_id | GSE44029
| | Sample_data_row_count | 54675
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