Search results for the GEO ID: GSE44084  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM1078126 | GPL1261 |
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pre-iPSC- siRNA to luciferase- biological replicate1
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pre-iPSC- siRNA to luciferase- biological replicate1
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cell type: pre-iPSCs
sirna mediated knockdown: control
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pre-iPSC-control 1
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| Sample_geo_accession | GSM1078126
| | Sample_status | Public on Jun 05 2013
| | Sample_submission_date | Feb 05 2013
| | Sample_last_update_date | Jun 05 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | pre-iPSCs were treated with indicated siRNA for 3 days and then RNA was extracted
| | Sample_growth_protocol_ch1 | pre-iPSCs we re grown in standard embryonic stem cell media
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction was carried out according to manufacturer's instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol
| | Sample_hyb_protocol | Hybridisation was performed using Affymetrix protocol
| | Sample_scan_protocol | Gene ChiPs were scanned with a Gene Array Scanner
| | Sample_data_processing | CEL files generated were normalized by RMA normalization from the R statistical package
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Rupa,,Sridharan
| | Sample_contact_email | rsridharan2@wisc.edu
| | Sample_contact_institute | UW-Madison
| | Sample_contact_address | 2118 Wisconsin Institute for Discovery
| | Sample_contact_city | Madison
| | Sample_contact_zip/postal_code | 53715
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1078nnn/GSM1078126/suppl/GSM1078126_pre-iPSC-control_1.CEL.gz
| | Sample_series_id | GSE44084
| | Sample_data_row_count | 45101
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GSM1078127 | GPL1261 |
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pre-iPSC- siRNA to luciferase- biological replicate2
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pre-iPSC- siRNA to luciferase- biological replicate2
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cell type: pre-iPSCs
sirna mediated knockdown: control
|
pre-iPSC-control 2
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| Sample_geo_accession | GSM1078127
| | Sample_status | Public on Jun 05 2013
| | Sample_submission_date | Feb 05 2013
| | Sample_last_update_date | Jun 05 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | pre-iPSCs were treated with indicated siRNA for 3 days and then RNA was extracted
| | Sample_growth_protocol_ch1 | pre-iPSCs we re grown in standard embryonic stem cell media
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction was carried out according to manufacturer's instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol
| | Sample_hyb_protocol | Hybridisation was performed using Affymetrix protocol
| | Sample_scan_protocol | Gene ChiPs were scanned with a Gene Array Scanner
| | Sample_data_processing | CEL files generated were normalized by RMA normalization from the R statistical package
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Rupa,,Sridharan
| | Sample_contact_email | rsridharan2@wisc.edu
| | Sample_contact_institute | UW-Madison
| | Sample_contact_address | 2118 Wisconsin Institute for Discovery
| | Sample_contact_city | Madison
| | Sample_contact_zip/postal_code | 53715
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1078nnn/GSM1078127/suppl/GSM1078127_pre-iPSC-control_2.CEL.gz
| | Sample_series_id | GSE44084
| | Sample_data_row_count | 45101
| | |
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GSM1078128 | GPL1261 |
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pre-iPSC- siRNA to luciferase- biological replicate3
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pre-iPSC- siRNA to luciferase- biological replicate3
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cell type: pre-iPSCs
sirna mediated knockdown: control
|
pre-iPSC-control 3
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| Sample_geo_accession | GSM1078128
| | Sample_status | Public on Jun 05 2013
| | Sample_submission_date | Feb 05 2013
| | Sample_last_update_date | Jun 05 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | pre-iPSCs were treated with indicated siRNA for 3 days and then RNA was extracted
| | Sample_growth_protocol_ch1 | pre-iPSCs we re grown in standard embryonic stem cell media
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction was carried out according to manufacturer's instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol
| | Sample_hyb_protocol | Hybridisation was performed using Affymetrix protocol
| | Sample_scan_protocol | Gene ChiPs were scanned with a Gene Array Scanner
| | Sample_data_processing | CEL files generated were normalized by RMA normalization from the R statistical package
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Rupa,,Sridharan
| | Sample_contact_email | rsridharan2@wisc.edu
| | Sample_contact_institute | UW-Madison
| | Sample_contact_address | 2118 Wisconsin Institute for Discovery
| | Sample_contact_city | Madison
| | Sample_contact_zip/postal_code | 53715
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1078nnn/GSM1078128/suppl/GSM1078128_pre-iPSC-control_3.CEL.gz
| | Sample_series_id | GSE44084
| | Sample_data_row_count | 45101
| | |
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GSM1078129 | GPL1261 |
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pre-iPSC- siRNA to Ehmt1, Ehmt2 and Setdb1- biological replicate1
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pre-iPSC- siRNA to Ehmt1, Ehmt2 and Setdb1- biological replicate1
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cell type: pre-iPSCs
sirna mediated knockdown: Ehmt1, Ehmt2, Setdb1 (3XHMT)
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pre-iPSC-3XHMT1
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| Sample_geo_accession | GSM1078129
| | Sample_status | Public on Jun 05 2013
| | Sample_submission_date | Feb 05 2013
| | Sample_last_update_date | Jun 05 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | pre-iPSCs were treated with indicated siRNA for 3 days and then RNA was extracted
| | Sample_growth_protocol_ch1 | pre-iPSCs we re grown in standard embryonic stem cell media
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction was carried out according to manufacturer's instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol
| | Sample_hyb_protocol | Hybridisation was performed using Affymetrix protocol
| | Sample_scan_protocol | Gene ChiPs were scanned with a Gene Array Scanner
| | Sample_data_processing | CEL files generated were normalized by RMA normalization from the R statistical package
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Rupa,,Sridharan
| | Sample_contact_email | rsridharan2@wisc.edu
| | Sample_contact_institute | UW-Madison
| | Sample_contact_address | 2118 Wisconsin Institute for Discovery
| | Sample_contact_city | Madison
| | Sample_contact_zip/postal_code | 53715
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1078nnn/GSM1078129/suppl/GSM1078129_pre-iPSC-3XHMT1.CEL.gz
| | Sample_series_id | GSE44084
| | Sample_data_row_count | 45101
| | |
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GSM1078130 | GPL1261 |
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pre-iPSC- siRNA to Ehmt1, Ehmt2 and Setdb1- biological replicate2
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pre-iPSC- siRNA to Ehmt1, Ehmt2 and Setdb1- biological replicate2
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cell type: pre-iPSCs
sirna mediated knockdown: Ehmt1, Ehmt2, Setdb1 (3XHMT)
|
pre-iPSC-3XHMT2
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| Sample_geo_accession | GSM1078130
| | Sample_status | Public on Jun 05 2013
| | Sample_submission_date | Feb 05 2013
| | Sample_last_update_date | Jun 05 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | pre-iPSCs were treated with indicated siRNA for 3 days and then RNA was extracted
| | Sample_growth_protocol_ch1 | pre-iPSCs we re grown in standard embryonic stem cell media
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction was carried out according to manufacturer's instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol
| | Sample_hyb_protocol | Hybridisation was performed using Affymetrix protocol
| | Sample_scan_protocol | Gene ChiPs were scanned with a Gene Array Scanner
| | Sample_data_processing | CEL files generated were normalized by RMA normalization from the R statistical package
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Rupa,,Sridharan
| | Sample_contact_email | rsridharan2@wisc.edu
| | Sample_contact_institute | UW-Madison
| | Sample_contact_address | 2118 Wisconsin Institute for Discovery
| | Sample_contact_city | Madison
| | Sample_contact_zip/postal_code | 53715
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1078nnn/GSM1078130/suppl/GSM1078130_pre-iPSC-3XHMT2.CEL.gz
| | Sample_series_id | GSE44084
| | Sample_data_row_count | 45101
| | |
|
GSM1078131 | GPL1261 |
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pre-iPSC- siRNA to Cbx3- biological replicate1
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pre-iPSC- siRNA to Cbx3- biological replicate1
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cell type: pre-iPSCs
sirna mediated knockdown: Cbx3 (HP1gamma)
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pre-iPSC-Cbx3-1
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| Sample_geo_accession | GSM1078131
| | Sample_status | Public on Jun 05 2013
| | Sample_submission_date | Feb 05 2013
| | Sample_last_update_date | Jun 05 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | pre-iPSCs were treated with indicated siRNA for 3 days and then RNA was extracted
| | Sample_growth_protocol_ch1 | pre-iPSCs we re grown in standard embryonic stem cell media
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction was carried out according to manufacturer's instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol
| | Sample_hyb_protocol | Hybridisation was performed using Affymetrix protocol
| | Sample_scan_protocol | Gene ChiPs were scanned with a Gene Array Scanner
| | Sample_data_processing | CEL files generated were normalized by RMA normalization from the R statistical package
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Rupa,,Sridharan
| | Sample_contact_email | rsridharan2@wisc.edu
| | Sample_contact_institute | UW-Madison
| | Sample_contact_address | 2118 Wisconsin Institute for Discovery
| | Sample_contact_city | Madison
| | Sample_contact_zip/postal_code | 53715
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1078nnn/GSM1078131/suppl/GSM1078131_pre-iPSC-Cbx3-1.CEL.gz
| | Sample_series_id | GSE44084
| | Sample_data_row_count | 45101
| | |
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GSM1078132 | GPL1261 |
|
pre-iPSC- siRNA to Cbx3- biological replicate2
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pre-iPSC- siRNA to Cbx3- biological replicate2
|
cell type: pre-iPSCs
sirna mediated knockdown: Cbx3 (HP1gamma)
|
pre-iPSC-Cbx3-2
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| Sample_geo_accession | GSM1078132
| | Sample_status | Public on Jun 05 2013
| | Sample_submission_date | Feb 05 2013
| | Sample_last_update_date | Jun 05 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | pre-iPSCs were treated with indicated siRNA for 3 days and then RNA was extracted
| | Sample_growth_protocol_ch1 | pre-iPSCs we re grown in standard embryonic stem cell media
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction was carried out according to manufacturer's instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol
| | Sample_hyb_protocol | Hybridisation was performed using Affymetrix protocol
| | Sample_scan_protocol | Gene ChiPs were scanned with a Gene Array Scanner
| | Sample_data_processing | CEL files generated were normalized by RMA normalization from the R statistical package
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Rupa,,Sridharan
| | Sample_contact_email | rsridharan2@wisc.edu
| | Sample_contact_institute | UW-Madison
| | Sample_contact_address | 2118 Wisconsin Institute for Discovery
| | Sample_contact_city | Madison
| | Sample_contact_zip/postal_code | 53715
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1078nnn/GSM1078132/suppl/GSM1078132_pre-iPSC-Cbx3-2.CEL.gz
| | Sample_series_id | GSE44084
| | Sample_data_row_count | 45101
| | |
|
GSM1078133 | GPL1261 |
|
pre-iPSC- siRNA to Cbx3- biological replicate3
|
pre-iPSC- siRNA to Cbx3- biological replicate3
|
cell type: pre-iPSCs
sirna mediated knockdown: Cbx3 (HP1gamma)
|
pre-iPSC-Cbx3-3
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| Sample_geo_accession | GSM1078133
| | Sample_status | Public on Jun 05 2013
| | Sample_submission_date | Feb 05 2013
| | Sample_last_update_date | Jun 05 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | pre-iPSCs were treated with indicated siRNA for 3 days and then RNA was extracted
| | Sample_growth_protocol_ch1 | pre-iPSCs we re grown in standard embryonic stem cell media
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction was carried out according to manufacturer's instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol
| | Sample_hyb_protocol | Hybridisation was performed using Affymetrix protocol
| | Sample_scan_protocol | Gene ChiPs were scanned with a Gene Array Scanner
| | Sample_data_processing | CEL files generated were normalized by RMA normalization from the R statistical package
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Rupa,,Sridharan
| | Sample_contact_email | rsridharan2@wisc.edu
| | Sample_contact_institute | UW-Madison
| | Sample_contact_address | 2118 Wisconsin Institute for Discovery
| | Sample_contact_city | Madison
| | Sample_contact_zip/postal_code | 53715
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1078nnn/GSM1078133/suppl/GSM1078133_pre-iPSC-Cbx3-3.CEL.gz
| | Sample_series_id | GSE44084
| | Sample_data_row_count | 45101
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