Search results for the GEO ID: GSE44285  |
(Click on the check boxes provided under "Select for analysis", to initiate grouping) |
(Once the selection is made, click on "Add groups" in "Make groups for comparison", to make a group. Scroll down) |
|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM1082321 | GPL1261 |
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WT HSC 1
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wildtype murine HSCs
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genotype: wildtype
strain: C57Bl/6
cell type: HSC
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| Sample_geo_accession | GSM1082321
| | Sample_status | Public on Feb 28 2013
| | Sample_submission_date | Feb 12 2013
| | Sample_last_update_date | Feb 28 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | WT versus knock-out HSCs purified from 6-8 week old mice; KO allele described in Pub Med ID: 22013525
| | Sample_growth_protocol_ch1 | No growth- purification of native HSCs from bone marrow of mice
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | HSCss were extracted from bone marrow and purified using flow cytometry for KSL (lack of lineage marker expression (Lin-) and postive expression for c-Kit and Sca-1), expression of CD150 and included in the side population (Hoechst dye exclusion)
| | Sample_label_ch1 | dUTP-biotin
| | Sample_label_protocol_ch1 | Ambion Message Amp kit to amplify and label mRNA
| | Sample_hyb_protocol | Affymetrix hybridization protocol
| | Sample_scan_protocol | Gene Chip Scanner 3000
| | Sample_data_processing | GC-RMA
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Chad,A.,Shaw
| | Sample_contact_email | cashaw@bcm.edu
| | Sample_contact_phone | 7137988087
| | Sample_contact_laboratory | Shaw
| | Sample_contact_department | Molecular and Human Genetics
| | Sample_contact_institute | BCM
| | Sample_contact_address | 1 Baylor Plaza
| | Sample_contact_city | Houston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1082nnn/GSM1082321/suppl/GSM1082321_WT-HSC-1.cel.gz
| | Sample_series_id | GSE44285
| | Sample_data_row_count | 45101
| | |
|
GSM1082322 | GPL1261 |
|
WT HSC 2
|
wildtype murine HSCs
|
genotype: wildtype
strain: C57Bl/6
cell type: HSC
|
|
| Sample_geo_accession | GSM1082322
| | Sample_status | Public on Feb 28 2013
| | Sample_submission_date | Feb 12 2013
| | Sample_last_update_date | Feb 28 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | WT versus knock-out HSCs purified from 6-8 week old mice; KO allele described in Pub Med ID: 22013525
| | Sample_growth_protocol_ch1 | No growth- purification of native HSCs from bone marrow of mice
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | HSCss were extracted from bone marrow and purified using flow cytometry for KSL (lack of lineage marker expression (Lin-) and postive expression for c-Kit and Sca-1), expression of CD150 and included in the side population (Hoechst dye exclusion)
| | Sample_label_ch1 | dUTP-biotin
| | Sample_label_protocol_ch1 | Ambion Message Amp kit to amplify and label mRNA
| | Sample_hyb_protocol | Affymetrix hybridization protocol
| | Sample_scan_protocol | Gene Chip Scanner 3000
| | Sample_data_processing | GC-RMA
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Chad,A.,Shaw
| | Sample_contact_email | cashaw@bcm.edu
| | Sample_contact_phone | 7137988087
| | Sample_contact_laboratory | Shaw
| | Sample_contact_department | Molecular and Human Genetics
| | Sample_contact_institute | BCM
| | Sample_contact_address | 1 Baylor Plaza
| | Sample_contact_city | Houston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1082nnn/GSM1082322/suppl/GSM1082322_WT-HSC-2.cel.gz
| | Sample_series_id | GSE44285
| | Sample_data_row_count | 45101
| | |
|
GSM1082323 | GPL1261 |
|
WT HSC 3
|
wildtype murine HSCs
|
genotype: wildtype
strain: C57Bl/6
cell type: HSC
|
|
| Sample_geo_accession | GSM1082323
| | Sample_status | Public on Feb 28 2013
| | Sample_submission_date | Feb 12 2013
| | Sample_last_update_date | Feb 28 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | WT versus knock-out HSCs purified from 6-8 week old mice; KO allele described in Pub Med ID: 22013525
| | Sample_growth_protocol_ch1 | No growth- purification of native HSCs from bone marrow of mice
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | HSCss were extracted from bone marrow and purified using flow cytometry for KSL (lack of lineage marker expression (Lin-) and postive expression for c-Kit and Sca-1), expression of CD150 and included in the side population (Hoechst dye exclusion)
| | Sample_label_ch1 | dUTP-biotin
| | Sample_label_protocol_ch1 | Ambion Message Amp kit to amplify and label mRNA
| | Sample_hyb_protocol | Affymetrix hybridization protocol
| | Sample_scan_protocol | Gene Chip Scanner 3000
| | Sample_data_processing | GC-RMA
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Chad,A.,Shaw
| | Sample_contact_email | cashaw@bcm.edu
| | Sample_contact_phone | 7137988087
| | Sample_contact_laboratory | Shaw
| | Sample_contact_department | Molecular and Human Genetics
| | Sample_contact_institute | BCM
| | Sample_contact_address | 1 Baylor Plaza
| | Sample_contact_city | Houston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1082nnn/GSM1082323/suppl/GSM1082323_WT-HSC-3.cel.gz
| | Sample_series_id | GSE44285
| | Sample_data_row_count | 45101
| | |
|
GSM1082324 | GPL1261 |
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Atxn1L HSC 1
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Atxn1L null murine HSCs
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genotype: Atxn1L-null
strain: C57Bl/6
cell type: HSC
|
|
| Sample_geo_accession | GSM1082324
| | Sample_status | Public on Feb 28 2013
| | Sample_submission_date | Feb 12 2013
| | Sample_last_update_date | Feb 28 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | WT versus knock-out HSCs purified from 6-8 week old mice; KO allele described in Pub Med ID: 22013525
| | Sample_growth_protocol_ch1 | No growth- purification of native HSCs from bone marrow of mice
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | HSCss were extracted from bone marrow and purified using flow cytometry for KSL (lack of lineage marker expression (Lin-) and postive expression for c-Kit and Sca-1), expression of CD150 and included in the side population (Hoechst dye exclusion)
| | Sample_label_ch1 | dUTP-biotin
| | Sample_label_protocol_ch1 | Ambion Message Amp kit to amplify and label mRNA
| | Sample_hyb_protocol | Affymetrix hybridization protocol
| | Sample_scan_protocol | Gene Chip Scanner 3000
| | Sample_data_processing | GC-RMA
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Chad,A.,Shaw
| | Sample_contact_email | cashaw@bcm.edu
| | Sample_contact_phone | 7137988087
| | Sample_contact_laboratory | Shaw
| | Sample_contact_department | Molecular and Human Genetics
| | Sample_contact_institute | BCM
| | Sample_contact_address | 1 Baylor Plaza
| | Sample_contact_city | Houston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1082nnn/GSM1082324/suppl/GSM1082324_Atxn1L-HSC-1.cel.gz
| | Sample_series_id | GSE44285
| | Sample_data_row_count | 45101
| | |
|
GSM1082325 | GPL1261 |
|
Atxn1L HSC 2
|
Atxn1L null murine HSCs
|
genotype: Atxn1L-null
strain: C57Bl/6
cell type: HSC
|
|
| Sample_geo_accession | GSM1082325
| | Sample_status | Public on Feb 28 2013
| | Sample_submission_date | Feb 12 2013
| | Sample_last_update_date | Feb 28 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | WT versus knock-out HSCs purified from 6-8 week old mice; KO allele described in Pub Med ID: 22013525
| | Sample_growth_protocol_ch1 | No growth- purification of native HSCs from bone marrow of mice
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | HSCss were extracted from bone marrow and purified using flow cytometry for KSL (lack of lineage marker expression (Lin-) and postive expression for c-Kit and Sca-1), expression of CD150 and included in the side population (Hoechst dye exclusion)
| | Sample_label_ch1 | dUTP-biotin
| | Sample_label_protocol_ch1 | Ambion Message Amp kit to amplify and label mRNA
| | Sample_hyb_protocol | Affymetrix hybridization protocol
| | Sample_scan_protocol | Gene Chip Scanner 3000
| | Sample_data_processing | GC-RMA
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Chad,A.,Shaw
| | Sample_contact_email | cashaw@bcm.edu
| | Sample_contact_phone | 7137988087
| | Sample_contact_laboratory | Shaw
| | Sample_contact_department | Molecular and Human Genetics
| | Sample_contact_institute | BCM
| | Sample_contact_address | 1 Baylor Plaza
| | Sample_contact_city | Houston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1082nnn/GSM1082325/suppl/GSM1082325_Atxn1L-HSC-2.cel.gz
| | Sample_series_id | GSE44285
| | Sample_data_row_count | 45101
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