Search results for the GEO ID: GSE44331  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM1083361 | GPL1261 |
|
WT uninfected, biological replicate 1
|
Mouse whole brain
|
tissue: whole brain
strain: C57BL/6J
genotype/variation: wild type
age: 8 weeks, 5 days
infection: none
|
Gene expression data
|
| Sample_geo_accession | GSM1083361
| | Sample_status | Public on Apr 04 2013
| | Sample_submission_date | Feb 14 2013
| | Sample_last_update_date | Apr 04 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Brains from 3 mice were pooled into 1 sample and samples were run in triplicate (total of 9 mice per condition)
| | Sample_growth_protocol_ch1 | 8-week old male mice were infected intranasally with 107 pfu of VSV-Indiana strain. At 5 days post-infection mice were perfused and whole brain was harvested for RNA extraction.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | 16 hr hybridization
| | Sample_scan_protocol | 488 nm, 570 nm, Affymetrix Genechip Scanner
| | Sample_data_processing | The data were processed using MAS5. Genepattern software filtered the MAS5 values for the genes that were significant. These data are on the Series record.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Melissa,B,Uccellini
| | Sample_contact_email | melissa.uccellini@gmail.com
| | Sample_contact_institute | Mt Sinai School of Medicine
| | Sample_contact_address | 1 Gustave Levy Place
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10023
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1083nnn/GSM1083361/suppl/GSM1083361_1-WT_PBS_Mouse430_2_.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1083nnn/GSM1083361/suppl/GSM1083361_1-WT_PBS_Mouse430_2_.mas5.CHP.gz
| | Sample_series_id | GSE44331
| | Sample_data_row_count | 45101
| | |
|
GSM1083362 | GPL1261 |
|
WT uninfected, biological replicate 2
|
Mouse whole brain
|
tissue: whole brain
strain: C57BL/6J
genotype/variation: wild type
age: 8 weeks, 5 days
infection: none
|
Gene expression data
|
| Sample_geo_accession | GSM1083362
| | Sample_status | Public on Apr 04 2013
| | Sample_submission_date | Feb 14 2013
| | Sample_last_update_date | Apr 04 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Brains from 3 mice were pooled into 1 sample and samples were run in triplicate (total of 9 mice per condition)
| | Sample_growth_protocol_ch1 | 8-week old male mice were infected intranasally with 107 pfu of VSV-Indiana strain. At 5 days post-infection mice were perfused and whole brain was harvested for RNA extraction.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | 16 hr hybridization
| | Sample_scan_protocol | 488 nm, 570 nm, Affymetrix Genechip Scanner
| | Sample_data_processing | The data were processed using MAS5. Genepattern software filtered the MAS5 values for the genes that were significant. These data are on the Series record.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Melissa,B,Uccellini
| | Sample_contact_email | melissa.uccellini@gmail.com
| | Sample_contact_institute | Mt Sinai School of Medicine
| | Sample_contact_address | 1 Gustave Levy Place
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10023
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1083nnn/GSM1083362/suppl/GSM1083362_2-WT_PBS_Mouse430_2_.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1083nnn/GSM1083362/suppl/GSM1083362_2-WT_PBS_Mouse430_2_.mas5.CHP.gz
| | Sample_series_id | GSE44331
| | Sample_data_row_count | 45101
| | |
|
GSM1083363 | GPL1261 |
|
WT uninfected, biological replicate 3
|
Mouse whole brain
|
tissue: whole brain
strain: C57BL/6J
genotype/variation: wild type
age: 8 weeks, 5 days
infection: none
|
Gene expression data
|
| Sample_geo_accession | GSM1083363
| | Sample_status | Public on Apr 04 2013
| | Sample_submission_date | Feb 14 2013
| | Sample_last_update_date | Apr 04 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Brains from 3 mice were pooled into 1 sample and samples were run in triplicate (total of 9 mice per condition)
| | Sample_growth_protocol_ch1 | 8-week old male mice were infected intranasally with 107 pfu of VSV-Indiana strain. At 5 days post-infection mice were perfused and whole brain was harvested for RNA extraction.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | 16 hr hybridization
| | Sample_scan_protocol | 488 nm, 570 nm, Affymetrix Genechip Scanner
| | Sample_data_processing | The data were processed using MAS5. Genepattern software filtered the MAS5 values for the genes that were significant. These data are on the Series record.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Melissa,B,Uccellini
| | Sample_contact_email | melissa.uccellini@gmail.com
| | Sample_contact_institute | Mt Sinai School of Medicine
| | Sample_contact_address | 1 Gustave Levy Place
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10023
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1083nnn/GSM1083363/suppl/GSM1083363_3-WT_PBS_Mouse430_2_.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1083nnn/GSM1083363/suppl/GSM1083363_3-WT_PBS_Mouse430_2_.mas5.CHP.gz
| | Sample_series_id | GSE44331
| | Sample_data_row_count | 45101
| | |
|
GSM1083364 | GPL1261 |
|
KO uninfected, biological replicate 1
|
Mouse whole brain
|
tissue: whole brain
strain: C57BL/6J
genotype/variation: Sarm1-/-
age: 8 weeks, 5 days
infection: none
|
Gene expression data
|
| Sample_geo_accession | GSM1083364
| | Sample_status | Public on Apr 04 2013
| | Sample_submission_date | Feb 14 2013
| | Sample_last_update_date | Apr 04 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Brains from 3 mice were pooled into 1 sample and samples were run in triplicate (total of 9 mice per condition)
| | Sample_growth_protocol_ch1 | 8-week old male mice were infected intranasally with 107 pfu of VSV-Indiana strain. At 5 days post-infection mice were perfused and whole brain was harvested for RNA extraction.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | 16 hr hybridization
| | Sample_scan_protocol | 488 nm, 570 nm, Affymetrix Genechip Scanner
| | Sample_data_processing | The data were processed using MAS5. Genepattern software filtered the MAS5 values for the genes that were significant. These data are on the Series record.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Melissa,B,Uccellini
| | Sample_contact_email | melissa.uccellini@gmail.com
| | Sample_contact_institute | Mt Sinai School of Medicine
| | Sample_contact_address | 1 Gustave Levy Place
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10023
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1083nnn/GSM1083364/suppl/GSM1083364_4-KO_PBS_Mouse430_2_.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1083nnn/GSM1083364/suppl/GSM1083364_4-KO_PBS_Mouse430_2_.mas5.CHP.gz
| | Sample_series_id | GSE44331
| | Sample_data_row_count | 45101
| | |
|
GSM1083365 | GPL1261 |
|
KO uninfected, biological replicate 2
|
Mouse whole brain
|
tissue: whole brain
strain: C57BL/6J
genotype/variation: Sarm1-/-
age: 8 weeks, 5 days
infection: none
|
Gene expression data
|
| Sample_geo_accession | GSM1083365
| | Sample_status | Public on Apr 04 2013
| | Sample_submission_date | Feb 14 2013
| | Sample_last_update_date | Apr 04 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Brains from 3 mice were pooled into 1 sample and samples were run in triplicate (total of 9 mice per condition)
| | Sample_growth_protocol_ch1 | 8-week old male mice were infected intranasally with 107 pfu of VSV-Indiana strain. At 5 days post-infection mice were perfused and whole brain was harvested for RNA extraction.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | 16 hr hybridization
| | Sample_scan_protocol | 488 nm, 570 nm, Affymetrix Genechip Scanner
| | Sample_data_processing | The data were processed using MAS5. Genepattern software filtered the MAS5 values for the genes that were significant. These data are on the Series record.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Melissa,B,Uccellini
| | Sample_contact_email | melissa.uccellini@gmail.com
| | Sample_contact_institute | Mt Sinai School of Medicine
| | Sample_contact_address | 1 Gustave Levy Place
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10023
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1083nnn/GSM1083365/suppl/GSM1083365_5-KO_PBS_Mouse430_2_.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1083nnn/GSM1083365/suppl/GSM1083365_5-KO_PBS_Mouse430_2_.mas5.CHP.gz
| | Sample_series_id | GSE44331
| | Sample_data_row_count | 45101
| | |
|
GSM1083366 | GPL1261 |
|
KO uninfected, biological replicate 3
|
Mouse whole brain
|
tissue: whole brain
strain: C57BL/6J
genotype/variation: Sarm1-/-
age: 8 weeks, 5 days
infection: none
|
Gene expression data
|
| Sample_geo_accession | GSM1083366
| | Sample_status | Public on Apr 04 2013
| | Sample_submission_date | Feb 14 2013
| | Sample_last_update_date | Apr 04 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Brains from 3 mice were pooled into 1 sample and samples were run in triplicate (total of 9 mice per condition)
| | Sample_growth_protocol_ch1 | 8-week old male mice were infected intranasally with 107 pfu of VSV-Indiana strain. At 5 days post-infection mice were perfused and whole brain was harvested for RNA extraction.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | 16 hr hybridization
| | Sample_scan_protocol | 488 nm, 570 nm, Affymetrix Genechip Scanner
| | Sample_data_processing | The data were processed using MAS5. Genepattern software filtered the MAS5 values for the genes that were significant. These data are on the Series record.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Melissa,B,Uccellini
| | Sample_contact_email | melissa.uccellini@gmail.com
| | Sample_contact_institute | Mt Sinai School of Medicine
| | Sample_contact_address | 1 Gustave Levy Place
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10023
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1083nnn/GSM1083366/suppl/GSM1083366_6-KO_PBS_Mouse430_2_.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1083nnn/GSM1083366/suppl/GSM1083366_6-KO_PBS_Mouse430_2_.mas5.CHP.gz
| | Sample_series_id | GSE44331
| | Sample_data_row_count | 45101
| | |
|
GSM1083367 | GPL1261 |
|
WT VSV infected, biological replicate 1
|
Mouse whole brain
|
tissue: whole brain
strain: C57BL/6J
genotype/variation: wild type
age: 8 weeks, 5 days
infection: 107 pfu of VSV-Indiana strain
|
Gene expression data
|
| Sample_geo_accession | GSM1083367
| | Sample_status | Public on Apr 04 2013
| | Sample_submission_date | Feb 14 2013
| | Sample_last_update_date | Apr 04 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Brains from 3 mice were pooled into 1 sample and samples were run in triplicate (total of 9 mice per condition)
| | Sample_growth_protocol_ch1 | 8-week old male mice were infected intranasally with 107 pfu of VSV-Indiana strain. At 5 days post-infection mice were perfused and whole brain was harvested for RNA extraction.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | 16 hr hybridization
| | Sample_scan_protocol | 488 nm, 570 nm, Affymetrix Genechip Scanner
| | Sample_data_processing | The data were processed using MAS5. Genepattern software filtered the MAS5 values for the genes that were significant. These data are on the Series record.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Melissa,B,Uccellini
| | Sample_contact_email | melissa.uccellini@gmail.com
| | Sample_contact_institute | Mt Sinai School of Medicine
| | Sample_contact_address | 1 Gustave Levy Place
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10023
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1083nnn/GSM1083367/suppl/GSM1083367_7-WT_VSV_Mouse430_2_.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1083nnn/GSM1083367/suppl/GSM1083367_7-WT_VSV_Mouse430_2_.mas5.CHP.gz
| | Sample_series_id | GSE44331
| | Sample_data_row_count | 45101
| | |
|
GSM1083368 | GPL1261 |
|
WT VSV infected, biological replicate 2
|
Mouse whole brain
|
tissue: whole brain
strain: C57BL/6J
genotype/variation: wild type
age: 8 weeks, 5 days
infection: 107 pfu of VSV-Indiana strain
|
Gene expression data
|
| Sample_geo_accession | GSM1083368
| | Sample_status | Public on Apr 04 2013
| | Sample_submission_date | Feb 14 2013
| | Sample_last_update_date | Apr 04 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Brains from 3 mice were pooled into 1 sample and samples were run in triplicate (total of 9 mice per condition)
| | Sample_growth_protocol_ch1 | 8-week old male mice were infected intranasally with 107 pfu of VSV-Indiana strain. At 5 days post-infection mice were perfused and whole brain was harvested for RNA extraction.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | 16 hr hybridization
| | Sample_scan_protocol | 488 nm, 570 nm, Affymetrix Genechip Scanner
| | Sample_data_processing | The data were processed using MAS5. Genepattern software filtered the MAS5 values for the genes that were significant. These data are on the Series record.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Melissa,B,Uccellini
| | Sample_contact_email | melissa.uccellini@gmail.com
| | Sample_contact_institute | Mt Sinai School of Medicine
| | Sample_contact_address | 1 Gustave Levy Place
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10023
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1083nnn/GSM1083368/suppl/GSM1083368_8-WT_VSV_Mouse430_2_.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1083nnn/GSM1083368/suppl/GSM1083368_8-WT_VSV_Mouse430_2_.mas5.CHP.gz
| | Sample_series_id | GSE44331
| | Sample_data_row_count | 45101
| | |
|
GSM1083369 | GPL1261 |
|
WT VSV infected, biological replicate 3
|
Mouse whole brain
|
tissue: whole brain
strain: C57BL/6J
genotype/variation: wild type
age: 8 weeks, 5 days
infection: 107 pfu of VSV-Indiana strain
|
Gene expression data
|
| Sample_geo_accession | GSM1083369
| | Sample_status | Public on Apr 04 2013
| | Sample_submission_date | Feb 14 2013
| | Sample_last_update_date | Apr 04 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Brains from 3 mice were pooled into 1 sample and samples were run in triplicate (total of 9 mice per condition)
| | Sample_growth_protocol_ch1 | 8-week old male mice were infected intranasally with 107 pfu of VSV-Indiana strain. At 5 days post-infection mice were perfused and whole brain was harvested for RNA extraction.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | 16 hr hybridization
| | Sample_scan_protocol | 488 nm, 570 nm, Affymetrix Genechip Scanner
| | Sample_data_processing | The data were processed using MAS5. Genepattern software filtered the MAS5 values for the genes that were significant. These data are on the Series record.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Melissa,B,Uccellini
| | Sample_contact_email | melissa.uccellini@gmail.com
| | Sample_contact_institute | Mt Sinai School of Medicine
| | Sample_contact_address | 1 Gustave Levy Place
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10023
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1083nnn/GSM1083369/suppl/GSM1083369_9-WT_VSV_Mouse430_2_.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1083nnn/GSM1083369/suppl/GSM1083369_9-WT_VSV_Mouse430_2_.mas5.CHP.gz
| | Sample_series_id | GSE44331
| | Sample_data_row_count | 45101
| | |
|
GSM1083370 | GPL1261 |
|
KO VSV infected, biological replicate 1
|
Mouse whole brain
|
tissue: whole brain
strain: C57BL/6J
genotype/variation: Sarm1-/-
age: 8 weeks, 5 days
infection: 107 pfu of VSV-Indiana strain
|
Gene expression data
|
| Sample_geo_accession | GSM1083370
| | Sample_status | Public on Apr 04 2013
| | Sample_submission_date | Feb 14 2013
| | Sample_last_update_date | Apr 04 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Brains from 3 mice were pooled into 1 sample and samples were run in triplicate (total of 9 mice per condition)
| | Sample_growth_protocol_ch1 | 8-week old male mice were infected intranasally with 107 pfu of VSV-Indiana strain. At 5 days post-infection mice were perfused and whole brain was harvested for RNA extraction.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | 16 hr hybridization
| | Sample_scan_protocol | 488 nm, 570 nm, Affymetrix Genechip Scanner
| | Sample_data_processing | The data were processed using MAS5. Genepattern software filtered the MAS5 values for the genes that were significant. These data are on the Series record.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Melissa,B,Uccellini
| | Sample_contact_email | melissa.uccellini@gmail.com
| | Sample_contact_institute | Mt Sinai School of Medicine
| | Sample_contact_address | 1 Gustave Levy Place
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10023
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1083nnn/GSM1083370/suppl/GSM1083370_10-KO_VSV_Mouse430_2_.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1083nnn/GSM1083370/suppl/GSM1083370_10-KO_VSV_Mouse430_2_.mas5.CHP.gz
| | Sample_series_id | GSE44331
| | Sample_data_row_count | 45101
| | |
|
GSM1083371 | GPL1261 |
|
KO VSV infected, biological replicate 2
|
Mouse whole brain
|
tissue: whole brain
strain: C57BL/6J
genotype/variation: Sarm1-/-
age: 8 weeks, 5 days
infection: 107 pfu of VSV-Indiana strain
|
Gene expression data
|
| Sample_geo_accession | GSM1083371
| | Sample_status | Public on Apr 04 2013
| | Sample_submission_date | Feb 14 2013
| | Sample_last_update_date | Apr 04 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Brains from 3 mice were pooled into 1 sample and samples were run in triplicate (total of 9 mice per condition)
| | Sample_growth_protocol_ch1 | 8-week old male mice were infected intranasally with 107 pfu of VSV-Indiana strain. At 5 days post-infection mice were perfused and whole brain was harvested for RNA extraction.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | 16 hr hybridization
| | Sample_scan_protocol | 488 nm, 570 nm, Affymetrix Genechip Scanner
| | Sample_data_processing | The data were processed using MAS5. Genepattern software filtered the MAS5 values for the genes that were significant. These data are on the Series record.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Melissa,B,Uccellini
| | Sample_contact_email | melissa.uccellini@gmail.com
| | Sample_contact_institute | Mt Sinai School of Medicine
| | Sample_contact_address | 1 Gustave Levy Place
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10023
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1083nnn/GSM1083371/suppl/GSM1083371_11-KO_VSV_Mouse430_2_.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1083nnn/GSM1083371/suppl/GSM1083371_11-KO_VSV_Mouse430_2_.mas5.CHP.gz
| | Sample_series_id | GSE44331
| | Sample_data_row_count | 45101
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GSM1083372 | GPL1261 |
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KO VSV infected, biological replicate 3
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Mouse whole brain
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tissue: whole brain
strain: C57BL/6J
genotype/variation: Sarm1-/-
age: 8 weeks, 5 days
infection: 107 pfu of VSV-Indiana strain
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Gene expression data
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| Sample_geo_accession | GSM1083372
| | Sample_status | Public on Apr 04 2013
| | Sample_submission_date | Feb 14 2013
| | Sample_last_update_date | Apr 04 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Brains from 3 mice were pooled into 1 sample and samples were run in triplicate (total of 9 mice per condition)
| | Sample_growth_protocol_ch1 | 8-week old male mice were infected intranasally with 107 pfu of VSV-Indiana strain. At 5 days post-infection mice were perfused and whole brain was harvested for RNA extraction.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | 16 hr hybridization
| | Sample_scan_protocol | 488 nm, 570 nm, Affymetrix Genechip Scanner
| | Sample_data_processing | The data were processed using MAS5. Genepattern software filtered the MAS5 values for the genes that were significant. These data are on the Series record.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Melissa,B,Uccellini
| | Sample_contact_email | melissa.uccellini@gmail.com
| | Sample_contact_institute | Mt Sinai School of Medicine
| | Sample_contact_address | 1 Gustave Levy Place
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10023
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1083nnn/GSM1083372/suppl/GSM1083372_12-KO_VSV_Mouse430_2_.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1083nnn/GSM1083372/suppl/GSM1083372_12-KO_VSV_Mouse430_2_.mas5.CHP.gz
| | Sample_series_id | GSE44331
| | Sample_data_row_count | 45101
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