Search results for the GEO ID: GSE44652  |
(Click on the check boxes provided under "Select for analysis", to initiate grouping) |
(Once the selection is made, click on "Add groups" in "Make groups for comparison", to make a group. Scroll down) |
|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM1088394 | GPL570 |
|
JURKAT_shGFP_dup1
|
T-ALL cell line, shGFP control
|
cell line: Jurkat
cell type: T-ALL cell line
shRNA: shGFP
|
GFP_dup1
|
| Sample_geo_accession | GSM1088394
| | Sample_status | Public on Mar 18 2013
| | Sample_submission_date | Feb 25 2013
| | Sample_last_update_date | Mar 18 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | JURKAT cells were infected with lentivirus encoding shRNA. The infected cells were selected by puromycin.
| | Sample_growth_protocol_ch1 | JURKAT cells were cultured in RPMI-1640 medium supplemented with 10% FBS and Pen/Strep.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | After 72 hours of infection, total RNA was harvested by Trizol, followed by a column purification using the RNeasy Mini kit (Qiagen) following the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix biotin label protocol.
| | Sample_hyb_protocol | Standard Affymetrix 3' array hybridyzation protocol.
| | Sample_scan_protocol | Standard Affymetrix confocal laser scanner protocol.
| | Sample_data_processing | The data was normalized and analyzed by dChip software.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Takaomi,,Sanda
| | Sample_contact_email | takaomi_sanda@dfci.harvard.edu
| | Sample_contact_institute | Dana-Farber Cancer Institute
| | Sample_contact_address | 450 Brookline Ave
| | Sample_contact_city | Boston
| | Sample_contact_zip/postal_code | 02215
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1088nnn/GSM1088394/suppl/GSM1088394_AL2010100601.CEL.gz
| | Sample_series_id | GSE44652
| | Sample_data_row_count | 54675
| | |
|
GSM1088395 | GPL570 |
|
JURKAT_shGFP_dup2
|
T-ALL cell line, shGFP control
|
cell line: Jurkat
cell type: T-ALL cell line
shRNA: shGFP
|
GFP_dup2
|
| Sample_geo_accession | GSM1088395
| | Sample_status | Public on Mar 18 2013
| | Sample_submission_date | Feb 25 2013
| | Sample_last_update_date | Mar 18 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | JURKAT cells were infected with lentivirus encoding shRNA. The infected cells were selected by puromycin.
| | Sample_growth_protocol_ch1 | JURKAT cells were cultured in RPMI-1640 medium supplemented with 10% FBS and Pen/Strep.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | After 72 hours of infection, total RNA was harvested by Trizol, followed by a column purification using the RNeasy Mini kit (Qiagen) following the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix biotin label protocol.
| | Sample_hyb_protocol | Standard Affymetrix 3' array hybridyzation protocol.
| | Sample_scan_protocol | Standard Affymetrix confocal laser scanner protocol.
| | Sample_data_processing | The data was normalized and analyzed by dChip software.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Takaomi,,Sanda
| | Sample_contact_email | takaomi_sanda@dfci.harvard.edu
| | Sample_contact_institute | Dana-Farber Cancer Institute
| | Sample_contact_address | 450 Brookline Ave
| | Sample_contact_city | Boston
| | Sample_contact_zip/postal_code | 02215
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1088nnn/GSM1088395/suppl/GSM1088395_AL2010100602.CEL.gz
| | Sample_series_id | GSE44652
| | Sample_data_row_count | 54675
| | |
|
GSM1088396 | GPL570 |
|
JURKAT_shLuc_dup1
|
T-ALL cell line, shLuc control
|
cell line: Jurkat
cell type: T-ALL cell line
shRNA: shLuc
|
Luc_dup1
|
| Sample_geo_accession | GSM1088396
| | Sample_status | Public on Mar 18 2013
| | Sample_submission_date | Feb 25 2013
| | Sample_last_update_date | Mar 18 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | JURKAT cells were infected with lentivirus encoding shRNA. The infected cells were selected by puromycin.
| | Sample_growth_protocol_ch1 | JURKAT cells were cultured in RPMI-1640 medium supplemented with 10% FBS and Pen/Strep.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | After 72 hours of infection, total RNA was harvested by Trizol, followed by a column purification using the RNeasy Mini kit (Qiagen) following the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix biotin label protocol.
| | Sample_hyb_protocol | Standard Affymetrix 3' array hybridyzation protocol.
| | Sample_scan_protocol | Standard Affymetrix confocal laser scanner protocol.
| | Sample_data_processing | The data was normalized and analyzed by dChip software.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Takaomi,,Sanda
| | Sample_contact_email | takaomi_sanda@dfci.harvard.edu
| | Sample_contact_institute | Dana-Farber Cancer Institute
| | Sample_contact_address | 450 Brookline Ave
| | Sample_contact_city | Boston
| | Sample_contact_zip/postal_code | 02215
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1088nnn/GSM1088396/suppl/GSM1088396_AL2010100603.CEL.gz
| | Sample_series_id | GSE44652
| | Sample_data_row_count | 54675
| | |
|
GSM1088397 | GPL570 |
|
JURKAT_shLuc_dup2
|
T-ALL cell line, shLuc control
|
cell line: Jurkat
cell type: T-ALL cell line
shRNA: shLuc
|
Luc_dup2
|
| Sample_geo_accession | GSM1088397
| | Sample_status | Public on Mar 18 2013
| | Sample_submission_date | Feb 25 2013
| | Sample_last_update_date | Mar 18 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | JURKAT cells were infected with lentivirus encoding shRNA. The infected cells were selected by puromycin.
| | Sample_growth_protocol_ch1 | JURKAT cells were cultured in RPMI-1640 medium supplemented with 10% FBS and Pen/Strep.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | After 72 hours of infection, total RNA was harvested by Trizol, followed by a column purification using the RNeasy Mini kit (Qiagen) following the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix biotin label protocol.
| | Sample_hyb_protocol | Standard Affymetrix 3' array hybridyzation protocol.
| | Sample_scan_protocol | Standard Affymetrix confocal laser scanner protocol.
| | Sample_data_processing | The data was normalized and analyzed by dChip software.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Takaomi,,Sanda
| | Sample_contact_email | takaomi_sanda@dfci.harvard.edu
| | Sample_contact_institute | Dana-Farber Cancer Institute
| | Sample_contact_address | 450 Brookline Ave
| | Sample_contact_city | Boston
| | Sample_contact_zip/postal_code | 02215
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1088nnn/GSM1088397/suppl/GSM1088397_AL2010100604.CEL.gz
| | Sample_series_id | GSE44652
| | Sample_data_row_count | 54675
| | |
|
GSM1088398 | GPL570 |
|
JURKAT_shTYK2#2_dup1
|
T-ALL cell line, shTYK2
|
cell line: Jurkat
cell type: T-ALL cell line
shRNA: shTYK2
|
TYK2_#2_dup1
|
| Sample_geo_accession | GSM1088398
| | Sample_status | Public on Mar 18 2013
| | Sample_submission_date | Feb 25 2013
| | Sample_last_update_date | Mar 18 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | JURKAT cells were infected with lentivirus encoding shRNA. The infected cells were selected by puromycin.
| | Sample_growth_protocol_ch1 | JURKAT cells were cultured in RPMI-1640 medium supplemented with 10% FBS and Pen/Strep.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | After 72 hours of infection, total RNA was harvested by Trizol, followed by a column purification using the RNeasy Mini kit (Qiagen) following the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix biotin label protocol.
| | Sample_hyb_protocol | Standard Affymetrix 3' array hybridyzation protocol.
| | Sample_scan_protocol | Standard Affymetrix confocal laser scanner protocol.
| | Sample_data_processing | The data was normalized and analyzed by dChip software.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Takaomi,,Sanda
| | Sample_contact_email | takaomi_sanda@dfci.harvard.edu
| | Sample_contact_institute | Dana-Farber Cancer Institute
| | Sample_contact_address | 450 Brookline Ave
| | Sample_contact_city | Boston
| | Sample_contact_zip/postal_code | 02215
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1088nnn/GSM1088398/suppl/GSM1088398_AL2010100605.CEL.gz
| | Sample_series_id | GSE44652
| | Sample_data_row_count | 54675
| | |
|
GSM1088399 | GPL570 |
|
JURKAT_shTYK2#2_dup2
|
T-ALL cell line, shTYK2
|
cell line: Jurkat
cell type: T-ALL cell line
shRNA: shTYK2
|
TYK2_#2_dup2
|
| Sample_geo_accession | GSM1088399
| | Sample_status | Public on Mar 18 2013
| | Sample_submission_date | Feb 25 2013
| | Sample_last_update_date | Mar 18 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | JURKAT cells were infected with lentivirus encoding shRNA. The infected cells were selected by puromycin.
| | Sample_growth_protocol_ch1 | JURKAT cells were cultured in RPMI-1640 medium supplemented with 10% FBS and Pen/Strep.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | After 72 hours of infection, total RNA was harvested by Trizol, followed by a column purification using the RNeasy Mini kit (Qiagen) following the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix biotin label protocol.
| | Sample_hyb_protocol | Standard Affymetrix 3' array hybridyzation protocol.
| | Sample_scan_protocol | Standard Affymetrix confocal laser scanner protocol.
| | Sample_data_processing | The data was normalized and analyzed by dChip software.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Takaomi,,Sanda
| | Sample_contact_email | takaomi_sanda@dfci.harvard.edu
| | Sample_contact_institute | Dana-Farber Cancer Institute
| | Sample_contact_address | 450 Brookline Ave
| | Sample_contact_city | Boston
| | Sample_contact_zip/postal_code | 02215
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1088nnn/GSM1088399/suppl/GSM1088399_AL2010100606.CEL.gz
| | Sample_series_id | GSE44652
| | Sample_data_row_count | 54675
| | |
|
GSM1088400 | GPL570 |
|
JURKAT_shTYK2#3_dup1
|
T-ALL cell line, shTYK2
|
cell line: Jurkat
cell type: T-ALL cell line
shRNA: shTYK2
|
TYK2_#3_dup1
|
| Sample_geo_accession | GSM1088400
| | Sample_status | Public on Mar 18 2013
| | Sample_submission_date | Feb 25 2013
| | Sample_last_update_date | Mar 18 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | JURKAT cells were infected with lentivirus encoding shRNA. The infected cells were selected by puromycin.
| | Sample_growth_protocol_ch1 | JURKAT cells were cultured in RPMI-1640 medium supplemented with 10% FBS and Pen/Strep.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | After 72 hours of infection, total RNA was harvested by Trizol, followed by a column purification using the RNeasy Mini kit (Qiagen) following the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix biotin label protocol.
| | Sample_hyb_protocol | Standard Affymetrix 3' array hybridyzation protocol.
| | Sample_scan_protocol | Standard Affymetrix confocal laser scanner protocol.
| | Sample_data_processing | The data was normalized and analyzed by dChip software.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Takaomi,,Sanda
| | Sample_contact_email | takaomi_sanda@dfci.harvard.edu
| | Sample_contact_institute | Dana-Farber Cancer Institute
| | Sample_contact_address | 450 Brookline Ave
| | Sample_contact_city | Boston
| | Sample_contact_zip/postal_code | 02215
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1088nnn/GSM1088400/suppl/GSM1088400_AL2010100607.CEL.gz
| | Sample_series_id | GSE44652
| | Sample_data_row_count | 54675
| | |
|
GSM1088401 | GPL570 |
|
JURKAT_shTYK2#3_dup2
|
T-ALL cell line, shTYK2
|
cell line: Jurkat
cell type: T-ALL cell line
shRNA: shTYK2
|
TYK2_#3_dup2
|
| Sample_geo_accession | GSM1088401
| | Sample_status | Public on Mar 18 2013
| | Sample_submission_date | Feb 25 2013
| | Sample_last_update_date | Mar 18 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | JURKAT cells were infected with lentivirus encoding shRNA. The infected cells were selected by puromycin.
| | Sample_growth_protocol_ch1 | JURKAT cells were cultured in RPMI-1640 medium supplemented with 10% FBS and Pen/Strep.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | After 72 hours of infection, total RNA was harvested by Trizol, followed by a column purification using the RNeasy Mini kit (Qiagen) following the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix biotin label protocol.
| | Sample_hyb_protocol | Standard Affymetrix 3' array hybridyzation protocol.
| | Sample_scan_protocol | Standard Affymetrix confocal laser scanner protocol.
| | Sample_data_processing | The data was normalized and analyzed by dChip software.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Takaomi,,Sanda
| | Sample_contact_email | takaomi_sanda@dfci.harvard.edu
| | Sample_contact_institute | Dana-Farber Cancer Institute
| | Sample_contact_address | 450 Brookline Ave
| | Sample_contact_city | Boston
| | Sample_contact_zip/postal_code | 02215
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1088nnn/GSM1088401/suppl/GSM1088401_AL2010100608.CEL.gz
| | Sample_series_id | GSE44652
| | Sample_data_row_count | 54675
| | |
|
GSM1088402 | GPL570 |
|
JURKAT_shSTAT1#2_dup1
|
T-ALL cell line, shSTAT1
|
cell line: Jurkat
cell type: T-ALL cell line
shRNA: shSTAT1
|
STAT1_#2_dup1
|
| Sample_geo_accession | GSM1088402
| | Sample_status | Public on Mar 18 2013
| | Sample_submission_date | Feb 25 2013
| | Sample_last_update_date | Mar 18 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | JURKAT cells were infected with lentivirus encoding shRNA. The infected cells were selected by puromycin.
| | Sample_growth_protocol_ch1 | JURKAT cells were cultured in RPMI-1640 medium supplemented with 10% FBS and Pen/Strep.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | After 72 hours of infection, total RNA was harvested by Trizol, followed by a column purification using the RNeasy Mini kit (Qiagen) following the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix biotin label protocol.
| | Sample_hyb_protocol | Standard Affymetrix 3' array hybridyzation protocol.
| | Sample_scan_protocol | Standard Affymetrix confocal laser scanner protocol.
| | Sample_data_processing | The data was normalized and analyzed by dChip software.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Takaomi,,Sanda
| | Sample_contact_email | takaomi_sanda@dfci.harvard.edu
| | Sample_contact_institute | Dana-Farber Cancer Institute
| | Sample_contact_address | 450 Brookline Ave
| | Sample_contact_city | Boston
| | Sample_contact_zip/postal_code | 02215
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1088nnn/GSM1088402/suppl/GSM1088402_AL2010100609.CEL.gz
| | Sample_series_id | GSE44652
| | Sample_data_row_count | 54675
| | |
|
GSM1088403 | GPL570 |
|
JURKAT_shSTAT1#2_dup2
|
T-ALL cell line, shSTAT1
|
cell line: Jurkat
cell type: T-ALL cell line
shRNA: shSTAT1
|
STAT1_#2_dup2
|
| Sample_geo_accession | GSM1088403
| | Sample_status | Public on Mar 18 2013
| | Sample_submission_date | Feb 25 2013
| | Sample_last_update_date | Mar 18 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | JURKAT cells were infected with lentivirus encoding shRNA. The infected cells were selected by puromycin.
| | Sample_growth_protocol_ch1 | JURKAT cells were cultured in RPMI-1640 medium supplemented with 10% FBS and Pen/Strep.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | After 72 hours of infection, total RNA was harvested by Trizol, followed by a column purification using the RNeasy Mini kit (Qiagen) following the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix biotin label protocol.
| | Sample_hyb_protocol | Standard Affymetrix 3' array hybridyzation protocol.
| | Sample_scan_protocol | Standard Affymetrix confocal laser scanner protocol.
| | Sample_data_processing | The data was normalized and analyzed by dChip software.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Takaomi,,Sanda
| | Sample_contact_email | takaomi_sanda@dfci.harvard.edu
| | Sample_contact_institute | Dana-Farber Cancer Institute
| | Sample_contact_address | 450 Brookline Ave
| | Sample_contact_city | Boston
| | Sample_contact_zip/postal_code | 02215
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1088nnn/GSM1088403/suppl/GSM1088403_AL2010100610.CEL.gz
| | Sample_series_id | GSE44652
| | Sample_data_row_count | 54675
| | |
|
GSM1088404 | GPL570 |
|
JURKAT_shSTAT1#3_dup1
|
T-ALL cell line, shSTAT1
|
cell line: Jurkat
cell type: T-ALL cell line
shRNA: shSTAT1
|
STAT1_#3_dup1
|
| Sample_geo_accession | GSM1088404
| | Sample_status | Public on Mar 18 2013
| | Sample_submission_date | Feb 25 2013
| | Sample_last_update_date | Mar 18 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | JURKAT cells were infected with lentivirus encoding shRNA. The infected cells were selected by puromycin.
| | Sample_growth_protocol_ch1 | JURKAT cells were cultured in RPMI-1640 medium supplemented with 10% FBS and Pen/Strep.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | After 72 hours of infection, total RNA was harvested by Trizol, followed by a column purification using the RNeasy Mini kit (Qiagen) following the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix biotin label protocol.
| | Sample_hyb_protocol | Standard Affymetrix 3' array hybridyzation protocol.
| | Sample_scan_protocol | Standard Affymetrix confocal laser scanner protocol.
| | Sample_data_processing | The data was normalized and analyzed by dChip software.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Takaomi,,Sanda
| | Sample_contact_email | takaomi_sanda@dfci.harvard.edu
| | Sample_contact_institute | Dana-Farber Cancer Institute
| | Sample_contact_address | 450 Brookline Ave
| | Sample_contact_city | Boston
| | Sample_contact_zip/postal_code | 02215
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1088nnn/GSM1088404/suppl/GSM1088404_AL2010100611.CEL.gz
| | Sample_series_id | GSE44652
| | Sample_data_row_count | 54675
| | |
|
GSM1088405 | GPL570 |
|
JURKAT_shSTAT1#3_dup2
|
T-ALL cell line, shSTAT1
|
cell line: Jurkat
cell type: T-ALL cell line
shRNA: shSTAT1
|
STAT1_#3_dup2
|
| Sample_geo_accession | GSM1088405
| | Sample_status | Public on Mar 18 2013
| | Sample_submission_date | Feb 25 2013
| | Sample_last_update_date | Mar 18 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | JURKAT cells were infected with lentivirus encoding shRNA. The infected cells were selected by puromycin.
| | Sample_growth_protocol_ch1 | JURKAT cells were cultured in RPMI-1640 medium supplemented with 10% FBS and Pen/Strep.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | After 72 hours of infection, total RNA was harvested by Trizol, followed by a column purification using the RNeasy Mini kit (Qiagen) following the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix biotin label protocol.
| | Sample_hyb_protocol | Standard Affymetrix 3' array hybridyzation protocol.
| | Sample_scan_protocol | Standard Affymetrix confocal laser scanner protocol.
| | Sample_data_processing | The data was normalized and analyzed by dChip software.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Takaomi,,Sanda
| | Sample_contact_email | takaomi_sanda@dfci.harvard.edu
| | Sample_contact_institute | Dana-Farber Cancer Institute
| | Sample_contact_address | 450 Brookline Ave
| | Sample_contact_city | Boston
| | Sample_contact_zip/postal_code | 02215
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1088nnn/GSM1088405/suppl/GSM1088405_AL2010100612.CEL.gz
| | Sample_series_id | GSE44652
| | Sample_data_row_count | 54675
| | |
|
| |
| |
Make groups for comparisons |
(2 groups will be compared at a time) |
|
| Select GSMs and click on "Add groups" |
Enter the group name here: |
|
|
|
