Search results for the GEO ID: GSE44867  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM1093076 | GPL570 |
|
1-A375-NTC-3hrs-ctrl-DMSO
|
1-A375-NTC-3hrs-ctrl-DMSO
|
cell line: A375
hsf1 kd: no
treatment: DMSO
|
Gene expression data from vec control cells treated with 0.1% DMSO
|
| Sample_geo_accession | GSM1093076
| | Sample_status | Public on Mar 06 2013
| | Sample_submission_date | Mar 05 2013
| | Sample_last_update_date | Mar 06 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | 300K cells were seeded in 6 wells for 3d with 100ng/ml doxyxycline prior to treatment for 3 h
| | Sample_growth_protocol_ch1 | All lines were cultured in RPMI-1640 supplemented with 10% FCS and 100ng/ml Doxycycline for 3d prior to treatment with 0.1% DMSO or 100nM HSP990for 3h.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNeasy Plus kit (qiagen) following the manufacturers instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Nugen Ovation RNA Amplification System+ WB + FL cDNA Biotin Module V2 (NuGen Lts)
| | Sample_hyb_protocol | Affymetrix GeneChip eukaryotic hybridization protocol (Affymetrix Inc.)
| | Sample_scan_protocol | GeneChip Scanner 3000 (Affymetrix Inc.)
| | Sample_data_processing | Micorarray Analysis Suite version 5.0 (MAS 5.0) background correction, scaled to 150
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yaoyu,,Chen
| | Sample_contact_email | yaoyu.chen@novartis.com
| | Sample_contact_institute | Novartis institution of biomedical research
| | Sample_contact_address | 250 Massachusetts Ave
| | Sample_contact_city | Cambridge
| | Sample_contact_state | MASSACHUSETTS
| | Sample_contact_zip/postal_code | 02139
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1093nnn/GSM1093076/suppl/GSM1093076_NUID-0000-0115-8319.cel.gz
| | Sample_series_id | GSE44867
| | Sample_data_row_count | 54675
| | |
|
GSM1093077 | GPL570 |
|
2-A375-NTC-3hrs-Dox-DMSO
|
2-A375-NTC-3hrs-Dox-DMSO
|
cell line: A375
hsf1 kd: no
treatment: DMSO
|
Gene expression data from vec control cells treated with 0.1% DMSO
|
| Sample_geo_accession | GSM1093077
| | Sample_status | Public on Mar 06 2013
| | Sample_submission_date | Mar 05 2013
| | Sample_last_update_date | Mar 06 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | 300K cells were seeded in 6 wells for 3d with 100ng/ml doxyxycline prior to treatment for 3 h
| | Sample_growth_protocol_ch1 | All lines were cultured in RPMI-1640 supplemented with 10% FCS and 100ng/ml Doxycycline for 3d prior to treatment with 0.1% DMSO or 100nM HSP990for 3h.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNeasy Plus kit (qiagen) following the manufacturers instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Nugen Ovation RNA Amplification System+ WB + FL cDNA Biotin Module V2 (NuGen Lts)
| | Sample_hyb_protocol | Affymetrix GeneChip eukaryotic hybridization protocol (Affymetrix Inc.)
| | Sample_scan_protocol | GeneChip Scanner 3000 (Affymetrix Inc.)
| | Sample_data_processing | Micorarray Analysis Suite version 5.0 (MAS 5.0) background correction, scaled to 150
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yaoyu,,Chen
| | Sample_contact_email | yaoyu.chen@novartis.com
| | Sample_contact_institute | Novartis institution of biomedical research
| | Sample_contact_address | 250 Massachusetts Ave
| | Sample_contact_city | Cambridge
| | Sample_contact_state | MASSACHUSETTS
| | Sample_contact_zip/postal_code | 02139
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1093nnn/GSM1093077/suppl/GSM1093077_NUID-0000-0115-8320.cel.gz
| | Sample_series_id | GSE44867
| | Sample_data_row_count | 54675
| | |
|
GSM1093078 | GPL570 |
|
3-A375-sh1999-3hrs-ctrl-DMSO
|
3-A375-sh1999-3hrs-ctrl-DMSO
|
cell line: A375
hsf1 kd: no
treatment: DMSO
|
Gene expression data from T877A AR overexpressing LNCaPs treated with 0.1% DMSO
|
| Sample_geo_accession | GSM1093078
| | Sample_status | Public on Mar 06 2013
| | Sample_submission_date | Mar 05 2013
| | Sample_last_update_date | Mar 06 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | 300K cells were seeded in 6 wells for 3d with 100ng/ml doxyxycline prior to treatment for 3 h
| | Sample_growth_protocol_ch1 | All lines were cultured in RPMI-1640 supplemented with 10% FCS and 100ng/ml Doxycycline for 3d prior to treatment with 0.1% DMSO or 100nM HSP990for 3h.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNeasy Plus kit (qiagen) following the manufacturers instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Nugen Ovation RNA Amplification System+ WB + FL cDNA Biotin Module V2 (NuGen Lts)
| | Sample_hyb_protocol | Affymetrix GeneChip eukaryotic hybridization protocol (Affymetrix Inc.)
| | Sample_scan_protocol | GeneChip Scanner 3000 (Affymetrix Inc.)
| | Sample_data_processing | Micorarray Analysis Suite version 5.0 (MAS 5.0) background correction, scaled to 150
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yaoyu,,Chen
| | Sample_contact_email | yaoyu.chen@novartis.com
| | Sample_contact_institute | Novartis institution of biomedical research
| | Sample_contact_address | 250 Massachusetts Ave
| | Sample_contact_city | Cambridge
| | Sample_contact_state | MASSACHUSETTS
| | Sample_contact_zip/postal_code | 02139
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1093nnn/GSM1093078/suppl/GSM1093078_NUID-0000-0115-8321.cel.gz
| | Sample_series_id | GSE44867
| | Sample_data_row_count | 54675
| | |
|
GSM1093079 | GPL570 |
|
4-A375-sh1999-3hrs-Dox-DMSO
|
4-A375-sh1999-3hrs-Dox-DMSO
|
cell line: A375
hsf1 kd: Yes
treatment: DMSO
|
Gene expression data from T877A AR overexpressing LNCaPs treated with 0.1% DMSO
|
| Sample_geo_accession | GSM1093079
| | Sample_status | Public on Mar 06 2013
| | Sample_submission_date | Mar 05 2013
| | Sample_last_update_date | Mar 06 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | 300K cells were seeded in 6 wells for 3d with 100ng/ml doxyxycline prior to treatment for 3 h
| | Sample_growth_protocol_ch1 | All lines were cultured in RPMI-1640 supplemented with 10% FCS and 100ng/ml Doxycycline for 3d prior to treatment with 0.1% DMSO or 100nM HSP990for 3h.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNeasy Plus kit (qiagen) following the manufacturers instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Nugen Ovation RNA Amplification System+ WB + FL cDNA Biotin Module V2 (NuGen Lts)
| | Sample_hyb_protocol | Affymetrix GeneChip eukaryotic hybridization protocol (Affymetrix Inc.)
| | Sample_scan_protocol | GeneChip Scanner 3000 (Affymetrix Inc.)
| | Sample_data_processing | Micorarray Analysis Suite version 5.0 (MAS 5.0) background correction, scaled to 150
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yaoyu,,Chen
| | Sample_contact_email | yaoyu.chen@novartis.com
| | Sample_contact_institute | Novartis institution of biomedical research
| | Sample_contact_address | 250 Massachusetts Ave
| | Sample_contact_city | Cambridge
| | Sample_contact_state | MASSACHUSETTS
| | Sample_contact_zip/postal_code | 02139
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1093nnn/GSM1093079/suppl/GSM1093079_NUID-0000-0115-8322.cel.gz
| | Sample_series_id | GSE44867
| | Sample_data_row_count | 54675
| | |
|
GSM1093080 | GPL570 |
|
5-A375-NTC-3hrs-ctrl-HSP990
|
5-A375-NTC-3hrs-ctrl-HSP990
|
cell line: A375
hsf1 kd: no
treatment: 100nMHSP990
|
Gene expression data from F876L/T877A AR overexpressing cells treated with 0.1% DMSO
|
| Sample_geo_accession | GSM1093080
| | Sample_status | Public on Mar 06 2013
| | Sample_submission_date | Mar 05 2013
| | Sample_last_update_date | Mar 06 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | 300K cells were seeded in 6 wells for 3d with 100ng/ml doxyxycline prior to treatment for 3 h
| | Sample_growth_protocol_ch1 | All lines were cultured in RPMI-1640 supplemented with 10% FCS and 100ng/ml Doxycycline for 3d prior to treatment with 0.1% DMSO or 100nM HSP990for 3h.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNeasy Plus kit (qiagen) following the manufacturers instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Nugen Ovation RNA Amplification System+ WB + FL cDNA Biotin Module V2 (NuGen Lts)
| | Sample_hyb_protocol | Affymetrix GeneChip eukaryotic hybridization protocol (Affymetrix Inc.)
| | Sample_scan_protocol | GeneChip Scanner 3000 (Affymetrix Inc.)
| | Sample_data_processing | Micorarray Analysis Suite version 5.0 (MAS 5.0) background correction, scaled to 150
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yaoyu,,Chen
| | Sample_contact_email | yaoyu.chen@novartis.com
| | Sample_contact_institute | Novartis institution of biomedical research
| | Sample_contact_address | 250 Massachusetts Ave
| | Sample_contact_city | Cambridge
| | Sample_contact_state | MASSACHUSETTS
| | Sample_contact_zip/postal_code | 02139
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1093nnn/GSM1093080/suppl/GSM1093080_NUID-0000-0115-8323.cel.gz
| | Sample_series_id | GSE44867
| | Sample_data_row_count | 54675
| | |
|
GSM1093081 | GPL570 |
|
6-A375-NTC-3hrs-Dox-HSP990
|
6-A375-NTC-3hrs-Dox-HSP990
|
cell line: A375
hsf1 kd: no
treatment: 100nMHSP990
|
Gene expression data from F876L/T877A AR overexpressing cells treated with 0.1% DMSO
|
| Sample_geo_accession | GSM1093081
| | Sample_status | Public on Mar 06 2013
| | Sample_submission_date | Mar 05 2013
| | Sample_last_update_date | Mar 06 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | 300K cells were seeded in 6 wells for 3d with 100ng/ml doxyxycline prior to treatment for 3 h
| | Sample_growth_protocol_ch1 | All lines were cultured in RPMI-1640 supplemented with 10% FCS and 100ng/ml Doxycycline for 3d prior to treatment with 0.1% DMSO or 100nM HSP990for 3h.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNeasy Plus kit (qiagen) following the manufacturers instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Nugen Ovation RNA Amplification System+ WB + FL cDNA Biotin Module V2 (NuGen Lts)
| | Sample_hyb_protocol | Affymetrix GeneChip eukaryotic hybridization protocol (Affymetrix Inc.)
| | Sample_scan_protocol | GeneChip Scanner 3000 (Affymetrix Inc.)
| | Sample_data_processing | Micorarray Analysis Suite version 5.0 (MAS 5.0) background correction, scaled to 150
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yaoyu,,Chen
| | Sample_contact_email | yaoyu.chen@novartis.com
| | Sample_contact_institute | Novartis institution of biomedical research
| | Sample_contact_address | 250 Massachusetts Ave
| | Sample_contact_city | Cambridge
| | Sample_contact_state | MASSACHUSETTS
| | Sample_contact_zip/postal_code | 02139
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1093nnn/GSM1093081/suppl/GSM1093081_NUID-0000-0115-8324.cel.gz
| | Sample_series_id | GSE44867
| | Sample_data_row_count | 54675
| | |
|
GSM1093082 | GPL570 |
|
7-A375-sh1999-3hrs-ctrl-HSP990
|
7-A375-sh1999-3hrs-ctrl-HSP990
|
cell line: A375
hsf1 kd: no
treatment: 100nMHSP990
|
Gene expression data from W741C/T877A overexpressing cells treated with 0.1% DMSO
|
| Sample_geo_accession | GSM1093082
| | Sample_status | Public on Mar 06 2013
| | Sample_submission_date | Mar 05 2013
| | Sample_last_update_date | Mar 06 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | 300K cells were seeded in 6 wells for 3d with 100ng/ml doxyxycline prior to treatment for 3 h
| | Sample_growth_protocol_ch1 | All lines were cultured in RPMI-1640 supplemented with 10% FCS and 100ng/ml Doxycycline for 3d prior to treatment with 0.1% DMSO or 100nM HSP990for 3h.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNeasy Plus kit (qiagen) following the manufacturers instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Nugen Ovation RNA Amplification System+ WB + FL cDNA Biotin Module V2 (NuGen Lts)
| | Sample_hyb_protocol | Affymetrix GeneChip eukaryotic hybridization protocol (Affymetrix Inc.)
| | Sample_scan_protocol | GeneChip Scanner 3000 (Affymetrix Inc.)
| | Sample_data_processing | Micorarray Analysis Suite version 5.0 (MAS 5.0) background correction, scaled to 150
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yaoyu,,Chen
| | Sample_contact_email | yaoyu.chen@novartis.com
| | Sample_contact_institute | Novartis institution of biomedical research
| | Sample_contact_address | 250 Massachusetts Ave
| | Sample_contact_city | Cambridge
| | Sample_contact_state | MASSACHUSETTS
| | Sample_contact_zip/postal_code | 02139
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1093nnn/GSM1093082/suppl/GSM1093082_NUID-0000-0115-8325.cel.gz
| | Sample_series_id | GSE44867
| | Sample_data_row_count | 54675
| | |
|
GSM1093083 | GPL570 |
|
8-A375-sh1999-3hrs-Dox-HSP990
|
8-A375-sh1999-3hrs-Dox-HSP990
|
cell line: A375
hsf1 kd: Yes
treatment: 100nMHSP990
|
Gene expression data from W741C/T877A overexpressing cells treated with 0.1% DMSO
|
| Sample_geo_accession | GSM1093083
| | Sample_status | Public on Mar 06 2013
| | Sample_submission_date | Mar 05 2013
| | Sample_last_update_date | Mar 06 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | 300K cells were seeded in 6 wells for 3d with 100ng/ml doxyxycline prior to treatment for 3 h
| | Sample_growth_protocol_ch1 | All lines were cultured in RPMI-1640 supplemented with 10% FCS and 100ng/ml Doxycycline for 3d prior to treatment with 0.1% DMSO or 100nM HSP990for 3h.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNeasy Plus kit (qiagen) following the manufacturers instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Nugen Ovation RNA Amplification System+ WB + FL cDNA Biotin Module V2 (NuGen Lts)
| | Sample_hyb_protocol | Affymetrix GeneChip eukaryotic hybridization protocol (Affymetrix Inc.)
| | Sample_scan_protocol | GeneChip Scanner 3000 (Affymetrix Inc.)
| | Sample_data_processing | Micorarray Analysis Suite version 5.0 (MAS 5.0) background correction, scaled to 150
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yaoyu,,Chen
| | Sample_contact_email | yaoyu.chen@novartis.com
| | Sample_contact_institute | Novartis institution of biomedical research
| | Sample_contact_address | 250 Massachusetts Ave
| | Sample_contact_city | Cambridge
| | Sample_contact_state | MASSACHUSETTS
| | Sample_contact_zip/postal_code | 02139
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1093nnn/GSM1093083/suppl/GSM1093083_NUID-0000-0115-8326.cel.gz
| | Sample_series_id | GSE44867
| | Sample_data_row_count | 54675
| | |
|
GSM1093084 | GPL570 |
|
17-A375-NTC-3hrs-ctrl-DMSO Repeat 1
|
17-A375-NTC-3hrs-ctrl-DMSO
|
cell line: A375
hsf1 kd: no
treatment: DMSO
|
Gene expression data from vec control cells treated with 10uM MDV
|
| Sample_geo_accession | GSM1093084
| | Sample_status | Public on Mar 06 2013
| | Sample_submission_date | Mar 05 2013
| | Sample_last_update_date | Mar 06 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | 300K cells were seeded in 6 wells for 3d with 100ng/ml doxyxycline prior to treatment for 3 h
| | Sample_growth_protocol_ch1 | All lines were cultured in RPMI-1640 supplemented with 10% FCS and 100ng/ml Doxycycline for 3d prior to treatment with 0.1% DMSO or 100nM HSP990for 3h.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNeasy Plus kit (qiagen) following the manufacturers instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Nugen Ovation RNA Amplification System+ WB + FL cDNA Biotin Module V2 (NuGen Lts)
| | Sample_hyb_protocol | Affymetrix GeneChip eukaryotic hybridization protocol (Affymetrix Inc.)
| | Sample_scan_protocol | GeneChip Scanner 3000 (Affymetrix Inc.)
| | Sample_data_processing | Micorarray Analysis Suite version 5.0 (MAS 5.0) background correction, scaled to 150
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yaoyu,,Chen
| | Sample_contact_email | yaoyu.chen@novartis.com
| | Sample_contact_institute | Novartis institution of biomedical research
| | Sample_contact_address | 250 Massachusetts Ave
| | Sample_contact_city | Cambridge
| | Sample_contact_state | MASSACHUSETTS
| | Sample_contact_zip/postal_code | 02139
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1093nnn/GSM1093084/suppl/GSM1093084_NUID-0000-0115-8335.cel.gz
| | Sample_series_id | GSE44867
| | Sample_data_row_count | 54675
| | |
|
GSM1093085 | GPL570 |
|
18-A375-NTC-3hrs-Dox-DMSO Repeat 1
|
18-A375-NTC-3hrs-Dox-DMSO
|
cell line: A375
hsf1 kd: no
treatment: DMSO
|
Gene expression data from vec control cells treated with 10uM MDV
|
| Sample_geo_accession | GSM1093085
| | Sample_status | Public on Mar 06 2013
| | Sample_submission_date | Mar 05 2013
| | Sample_last_update_date | Mar 06 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | 300K cells were seeded in 6 wells for 3d with 100ng/ml doxyxycline prior to treatment for 3 h
| | Sample_growth_protocol_ch1 | All lines were cultured in RPMI-1640 supplemented with 10% FCS and 100ng/ml Doxycycline for 3d prior to treatment with 0.1% DMSO or 100nM HSP990for 3h.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNeasy Plus kit (qiagen) following the manufacturers instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Nugen Ovation RNA Amplification System+ WB + FL cDNA Biotin Module V2 (NuGen Lts)
| | Sample_hyb_protocol | Affymetrix GeneChip eukaryotic hybridization protocol (Affymetrix Inc.)
| | Sample_scan_protocol | GeneChip Scanner 3000 (Affymetrix Inc.)
| | Sample_data_processing | Micorarray Analysis Suite version 5.0 (MAS 5.0) background correction, scaled to 150
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yaoyu,,Chen
| | Sample_contact_email | yaoyu.chen@novartis.com
| | Sample_contact_institute | Novartis institution of biomedical research
| | Sample_contact_address | 250 Massachusetts Ave
| | Sample_contact_city | Cambridge
| | Sample_contact_state | MASSACHUSETTS
| | Sample_contact_zip/postal_code | 02139
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1093nnn/GSM1093085/suppl/GSM1093085_NUID-0000-0115-8336.cel.gz
| | Sample_series_id | GSE44867
| | Sample_data_row_count | 54675
| | |
|
GSM1093086 | GPL570 |
|
19-A375-sh1999-3hrs-ctrl-DMSO Repeat 1
|
19-A375-sh1999-3hrs-ctrl-DMSO
|
cell line: A375
hsf1 kd: no
treatment: DMSO
|
Gene expression data from T877A AR overexpressing LNCaPs treated with 10uM MDV
|
| Sample_geo_accession | GSM1093086
| | Sample_status | Public on Mar 06 2013
| | Sample_submission_date | Mar 05 2013
| | Sample_last_update_date | Mar 06 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | 300K cells were seeded in 6 wells for 3d with 100ng/ml doxyxycline prior to treatment for 3 h
| | Sample_growth_protocol_ch1 | All lines were cultured in RPMI-1640 supplemented with 10% FCS and 100ng/ml Doxycycline for 3d prior to treatment with 0.1% DMSO or 100nM HSP990for 3h.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNeasy Plus kit (qiagen) following the manufacturers instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Nugen Ovation RNA Amplification System+ WB + FL cDNA Biotin Module V2 (NuGen Lts)
| | Sample_hyb_protocol | Affymetrix GeneChip eukaryotic hybridization protocol (Affymetrix Inc.)
| | Sample_scan_protocol | GeneChip Scanner 3000 (Affymetrix Inc.)
| | Sample_data_processing | Micorarray Analysis Suite version 5.0 (MAS 5.0) background correction, scaled to 150
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yaoyu,,Chen
| | Sample_contact_email | yaoyu.chen@novartis.com
| | Sample_contact_institute | Novartis institution of biomedical research
| | Sample_contact_address | 250 Massachusetts Ave
| | Sample_contact_city | Cambridge
| | Sample_contact_state | MASSACHUSETTS
| | Sample_contact_zip/postal_code | 02139
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1093nnn/GSM1093086/suppl/GSM1093086_NUID-0000-0115-8337.cel.gz
| | Sample_series_id | GSE44867
| | Sample_data_row_count | 54675
| | |
|
GSM1093087 | GPL570 |
|
20-A375-sh1999-3hrs-Dox-DMSO Repeat 1
|
20-A375-sh1999-3hrs-Dox-DMSO
|
cell line: A375
hsf1 kd: Yes
treatment: DMSO
|
Gene expression data from T877A AR overexpressing LNCaPs treated with 10uM MDV
|
| Sample_geo_accession | GSM1093087
| | Sample_status | Public on Mar 06 2013
| | Sample_submission_date | Mar 05 2013
| | Sample_last_update_date | Mar 06 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | 300K cells were seeded in 6 wells for 3d with 100ng/ml doxyxycline prior to treatment for 3 h
| | Sample_growth_protocol_ch1 | All lines were cultured in RPMI-1640 supplemented with 10% FCS and 100ng/ml Doxycycline for 3d prior to treatment with 0.1% DMSO or 100nM HSP990for 3h.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNeasy Plus kit (qiagen) following the manufacturers instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Nugen Ovation RNA Amplification System+ WB + FL cDNA Biotin Module V2 (NuGen Lts)
| | Sample_hyb_protocol | Affymetrix GeneChip eukaryotic hybridization protocol (Affymetrix Inc.)
| | Sample_scan_protocol | GeneChip Scanner 3000 (Affymetrix Inc.)
| | Sample_data_processing | Micorarray Analysis Suite version 5.0 (MAS 5.0) background correction, scaled to 150
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yaoyu,,Chen
| | Sample_contact_email | yaoyu.chen@novartis.com
| | Sample_contact_institute | Novartis institution of biomedical research
| | Sample_contact_address | 250 Massachusetts Ave
| | Sample_contact_city | Cambridge
| | Sample_contact_state | MASSACHUSETTS
| | Sample_contact_zip/postal_code | 02139
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1093nnn/GSM1093087/suppl/GSM1093087_NUID-0000-0115-8338.cel.gz
| | Sample_series_id | GSE44867
| | Sample_data_row_count | 54675
| | |
|
GSM1093088 | GPL570 |
|
21-A375-NTC-3hrs-ctrl-HSP990 Repeat 1
|
21-A375-NTC-3hrs-ctrl-HSP990
|
cell line: A375
hsf1 kd: no
treatment: 100nMHSP990
|
Gene expression data from F876L/T877A AR overexpressing cells treated with 10uM MDV
|
| Sample_geo_accession | GSM1093088
| | Sample_status | Public on Mar 06 2013
| | Sample_submission_date | Mar 05 2013
| | Sample_last_update_date | Mar 06 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | 300K cells were seeded in 6 wells for 3d with 100ng/ml doxyxycline prior to treatment for 3 h
| | Sample_growth_protocol_ch1 | All lines were cultured in RPMI-1640 supplemented with 10% FCS and 100ng/ml Doxycycline for 3d prior to treatment with 0.1% DMSO or 100nM HSP990for 3h.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNeasy Plus kit (qiagen) following the manufacturers instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Nugen Ovation RNA Amplification System+ WB + FL cDNA Biotin Module V2 (NuGen Lts)
| | Sample_hyb_protocol | Affymetrix GeneChip eukaryotic hybridization protocol (Affymetrix Inc.)
| | Sample_scan_protocol | GeneChip Scanner 3000 (Affymetrix Inc.)
| | Sample_data_processing | Micorarray Analysis Suite version 5.0 (MAS 5.0) background correction, scaled to 150
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yaoyu,,Chen
| | Sample_contact_email | yaoyu.chen@novartis.com
| | Sample_contact_institute | Novartis institution of biomedical research
| | Sample_contact_address | 250 Massachusetts Ave
| | Sample_contact_city | Cambridge
| | Sample_contact_state | MASSACHUSETTS
| | Sample_contact_zip/postal_code | 02139
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1093nnn/GSM1093088/suppl/GSM1093088_NUID-0000-0115-8339.cel.gz
| | Sample_series_id | GSE44867
| | Sample_data_row_count | 54675
| | |
|
GSM1093089 | GPL570 |
|
22-A375-NTC-3hrs-Dox-HSP990 Repeat 1
|
22-A375-NTC-3hrs-Dox-HSP990
|
cell line: A375
hsf1 kd: no
treatment: 100nMHSP990
|
Gene expression data from F876L/T877A AR overexpressing cells treated with 10uM MDV
|
| Sample_geo_accession | GSM1093089
| | Sample_status | Public on Mar 06 2013
| | Sample_submission_date | Mar 05 2013
| | Sample_last_update_date | Mar 06 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | 300K cells were seeded in 6 wells for 3d with 100ng/ml doxyxycline prior to treatment for 3 h
| | Sample_growth_protocol_ch1 | All lines were cultured in RPMI-1640 supplemented with 10% FCS and 100ng/ml Doxycycline for 3d prior to treatment with 0.1% DMSO or 100nM HSP990for 3h.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNeasy Plus kit (qiagen) following the manufacturers instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Nugen Ovation RNA Amplification System+ WB + FL cDNA Biotin Module V2 (NuGen Lts)
| | Sample_hyb_protocol | Affymetrix GeneChip eukaryotic hybridization protocol (Affymetrix Inc.)
| | Sample_scan_protocol | GeneChip Scanner 3000 (Affymetrix Inc.)
| | Sample_data_processing | Micorarray Analysis Suite version 5.0 (MAS 5.0) background correction, scaled to 150
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yaoyu,,Chen
| | Sample_contact_email | yaoyu.chen@novartis.com
| | Sample_contact_institute | Novartis institution of biomedical research
| | Sample_contact_address | 250 Massachusetts Ave
| | Sample_contact_city | Cambridge
| | Sample_contact_state | MASSACHUSETTS
| | Sample_contact_zip/postal_code | 02139
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1093nnn/GSM1093089/suppl/GSM1093089_NUID-0000-0115-8340.cel.gz
| | Sample_series_id | GSE44867
| | Sample_data_row_count | 54675
| | |
|
GSM1093090 | GPL570 |
|
23-A375-sh1999-3hrs-ctrl-HSP990 Repeat 1
|
23-A375-sh1999-3hrs-ctrl-HSP990
|
cell line: A375
hsf1 kd: no
treatment: 100nMHSP990
|
Gene expression data from W741C/T877A overexpressing cells treated with 10uM MDV
|
| Sample_geo_accession | GSM1093090
| | Sample_status | Public on Mar 06 2013
| | Sample_submission_date | Mar 05 2013
| | Sample_last_update_date | Mar 06 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | 300K cells were seeded in 6 wells for 3d with 100ng/ml doxyxycline prior to treatment for 3 h
| | Sample_growth_protocol_ch1 | All lines were cultured in RPMI-1640 supplemented with 10% FCS and 100ng/ml Doxycycline for 3d prior to treatment with 0.1% DMSO or 100nM HSP990for 3h.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNeasy Plus kit (qiagen) following the manufacturers instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Nugen Ovation RNA Amplification System+ WB + FL cDNA Biotin Module V2 (NuGen Lts)
| | Sample_hyb_protocol | Affymetrix GeneChip eukaryotic hybridization protocol (Affymetrix Inc.)
| | Sample_scan_protocol | GeneChip Scanner 3000 (Affymetrix Inc.)
| | Sample_data_processing | Micorarray Analysis Suite version 5.0 (MAS 5.0) background correction, scaled to 150
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yaoyu,,Chen
| | Sample_contact_email | yaoyu.chen@novartis.com
| | Sample_contact_institute | Novartis institution of biomedical research
| | Sample_contact_address | 250 Massachusetts Ave
| | Sample_contact_city | Cambridge
| | Sample_contact_state | MASSACHUSETTS
| | Sample_contact_zip/postal_code | 02139
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1093nnn/GSM1093090/suppl/GSM1093090_NUID-0000-0115-8341.cel.gz
| | Sample_series_id | GSE44867
| | Sample_data_row_count | 54675
| | |
|
GSM1093091 | GPL570 |
|
24-A375-sh1999-3hrs-Dox-HSP990 Repeat 1
|
24-A375-sh1999-3hrs-Dox-HSP990
|
cell line: A375
hsf1 kd: Yes
treatment: 100nMHSP990
|
Gene expression data from W741C/T877A overexpressing cells treated with 10uM MDV
|
| Sample_geo_accession | GSM1093091
| | Sample_status | Public on Mar 06 2013
| | Sample_submission_date | Mar 05 2013
| | Sample_last_update_date | Mar 06 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | 300K cells were seeded in 6 wells for 3d with 100ng/ml doxyxycline prior to treatment for 3 h
| | Sample_growth_protocol_ch1 | All lines were cultured in RPMI-1640 supplemented with 10% FCS and 100ng/ml Doxycycline for 3d prior to treatment with 0.1% DMSO or 100nM HSP990for 3h.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNeasy Plus kit (qiagen) following the manufacturers instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Nugen Ovation RNA Amplification System+ WB + FL cDNA Biotin Module V2 (NuGen Lts)
| | Sample_hyb_protocol | Affymetrix GeneChip eukaryotic hybridization protocol (Affymetrix Inc.)
| | Sample_scan_protocol | GeneChip Scanner 3000 (Affymetrix Inc.)
| | Sample_data_processing | Micorarray Analysis Suite version 5.0 (MAS 5.0) background correction, scaled to 150
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yaoyu,,Chen
| | Sample_contact_email | yaoyu.chen@novartis.com
| | Sample_contact_institute | Novartis institution of biomedical research
| | Sample_contact_address | 250 Massachusetts Ave
| | Sample_contact_city | Cambridge
| | Sample_contact_state | MASSACHUSETTS
| | Sample_contact_zip/postal_code | 02139
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1093nnn/GSM1093091/suppl/GSM1093091_NUID-0000-0115-8342.cel.gz
| | Sample_series_id | GSE44867
| | Sample_data_row_count | 54675
| | |
|
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| |
Make groups for comparisons |
(2 groups will be compared at a time) |
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| Select GSMs and click on "Add groups" |
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