Search results for the GEO ID: GSE44946  |
(Click on the check boxes provided under "Select for analysis", to initiate grouping) |
(Once the selection is made, click on "Add groups" in "Make groups for comparison", to make a group. Scroll down) |
|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM1094286 | GPL570 |
|
PANC1_DMSO_rep1
|
PANC1 cells treated with DMSO
|
tissue: pancreatic carcinoma
cell line: PANC1
treatment: DMSO
time: control
|
Gene expression data from DMSO treated PANC-1 cells
|
| Sample_geo_accession | GSM1094286
| | Sample_status | Public on Mar 10 2013
| | Sample_submission_date | Mar 07 2013
| | Sample_last_update_date | Mar 10 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | PANC1 cells were treated in 6-well plate with BRD7552 (5uM) and DMSO at a final concentration of 01%.
| | Sample_growth_protocol_ch1 | PANC1 cells were cultured according to ATCC instructions.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extraction was performed using Qiagen Rneasy kit according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yuan,,Yuan
| | Sample_contact_email | yuan@broadinstitute.org
| | Sample_contact_institute | Broad Institute
| | Sample_contact_address | 7 Cambridge center
| | Sample_contact_city | Cambridge
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02142
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1094nnn/GSM1094286/suppl/GSM1094286_PANC1_D_1.CEL.gz
| | Sample_series_id | GSE44946
| | Sample_data_row_count | 54675
| | |
|
GSM1094287 | GPL570 |
|
PANC1_DMSO_rep2
|
PANC1 cells treated with DMSO
|
tissue: pancreatic carcinoma
cell line: PANC1
treatment: DMSO
time: control
|
Gene expression data from DMSO treated PANC-1 cells
|
| Sample_geo_accession | GSM1094287
| | Sample_status | Public on Mar 10 2013
| | Sample_submission_date | Mar 07 2013
| | Sample_last_update_date | Mar 10 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | PANC1 cells were treated in 6-well plate with BRD7552 (5uM) and DMSO at a final concentration of 01%.
| | Sample_growth_protocol_ch1 | PANC1 cells were cultured according to ATCC instructions.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extraction was performed using Qiagen Rneasy kit according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yuan,,Yuan
| | Sample_contact_email | yuan@broadinstitute.org
| | Sample_contact_institute | Broad Institute
| | Sample_contact_address | 7 Cambridge center
| | Sample_contact_city | Cambridge
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02142
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1094nnn/GSM1094287/suppl/GSM1094287_PANC1_D_2.CEL.gz
| | Sample_series_id | GSE44946
| | Sample_data_row_count | 54675
| | |
|
GSM1094288 | GPL570 |
|
PANC1_DMSO_rep3
|
PANC1 cells treated with DMSO
|
tissue: pancreatic carcinoma
cell line: PANC1
treatment: DMSO
time: control
|
Gene expression data from DMSO treated PANC-1 cells
|
| Sample_geo_accession | GSM1094288
| | Sample_status | Public on Mar 10 2013
| | Sample_submission_date | Mar 07 2013
| | Sample_last_update_date | Mar 10 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | PANC1 cells were treated in 6-well plate with BRD7552 (5uM) and DMSO at a final concentration of 01%.
| | Sample_growth_protocol_ch1 | PANC1 cells were cultured according to ATCC instructions.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extraction was performed using Qiagen Rneasy kit according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yuan,,Yuan
| | Sample_contact_email | yuan@broadinstitute.org
| | Sample_contact_institute | Broad Institute
| | Sample_contact_address | 7 Cambridge center
| | Sample_contact_city | Cambridge
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02142
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1094nnn/GSM1094288/suppl/GSM1094288_PANC1_D_3.CEL.gz
| | Sample_series_id | GSE44946
| | Sample_data_row_count | 54675
| | |
|
GSM1094289 | GPL570 |
|
PANC1_BRD7552_6h_rep1
|
PANC1 cells treated with BRD7552 for 6 hours
|
tissue: pancreatic carcinoma
cell line: PANC1
treatment: BRD7552
time: 6 h
|
Gene expression data from BRD7552 treated PANC-1 cells at 6-hour
|
| Sample_geo_accession | GSM1094289
| | Sample_status | Public on Mar 10 2013
| | Sample_submission_date | Mar 07 2013
| | Sample_last_update_date | Mar 10 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | PANC1 cells were treated in 6-well plate with BRD7552 (5uM) and DMSO at a final concentration of 01%.
| | Sample_growth_protocol_ch1 | PANC1 cells were cultured according to ATCC instructions.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extraction was performed using Qiagen Rneasy kit according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yuan,,Yuan
| | Sample_contact_email | yuan@broadinstitute.org
| | Sample_contact_institute | Broad Institute
| | Sample_contact_address | 7 Cambridge center
| | Sample_contact_city | Cambridge
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02142
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1094nnn/GSM1094289/suppl/GSM1094289_PANC1_B6_1.CEL.gz
| | Sample_series_id | GSE44946
| | Sample_data_row_count | 54675
| | |
|
GSM1094290 | GPL570 |
|
PANC1_BRD7552_6h_rep2
|
PANC1 cells treated with BRD7552 for 6 hours
|
tissue: pancreatic carcinoma
cell line: PANC1
treatment: BRD7552
time: 6 h
|
Gene expression data from BRD7552 treated PANC-1 cells at 6-hour
|
| Sample_geo_accession | GSM1094290
| | Sample_status | Public on Mar 10 2013
| | Sample_submission_date | Mar 07 2013
| | Sample_last_update_date | Mar 10 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | PANC1 cells were treated in 6-well plate with BRD7552 (5uM) and DMSO at a final concentration of 01%.
| | Sample_growth_protocol_ch1 | PANC1 cells were cultured according to ATCC instructions.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extraction was performed using Qiagen Rneasy kit according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yuan,,Yuan
| | Sample_contact_email | yuan@broadinstitute.org
| | Sample_contact_institute | Broad Institute
| | Sample_contact_address | 7 Cambridge center
| | Sample_contact_city | Cambridge
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02142
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1094nnn/GSM1094290/suppl/GSM1094290_PANC1_B6_2.CEL.gz
| | Sample_series_id | GSE44946
| | Sample_data_row_count | 54675
| | |
|
GSM1094291 | GPL570 |
|
PANC1_BRD7552_6h_rep3
|
PANC1 cells treated with BRD7552 for 6 hours
|
tissue: pancreatic carcinoma
cell line: PANC1
treatment: BRD7552
time: 6 h
|
Gene expression data from BRD7552 treated PANC-1 cells at 6-hour
|
| Sample_geo_accession | GSM1094291
| | Sample_status | Public on Mar 10 2013
| | Sample_submission_date | Mar 07 2013
| | Sample_last_update_date | Mar 10 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | PANC1 cells were treated in 6-well plate with BRD7552 (5uM) and DMSO at a final concentration of 01%.
| | Sample_growth_protocol_ch1 | PANC1 cells were cultured according to ATCC instructions.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extraction was performed using Qiagen Rneasy kit according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yuan,,Yuan
| | Sample_contact_email | yuan@broadinstitute.org
| | Sample_contact_institute | Broad Institute
| | Sample_contact_address | 7 Cambridge center
| | Sample_contact_city | Cambridge
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02142
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1094nnn/GSM1094291/suppl/GSM1094291_PANC1_B6_3.CEL.gz
| | Sample_series_id | GSE44946
| | Sample_data_row_count | 54675
| | |
|
GSM1094292 | GPL570 |
|
PANC1_BRD7552_3d_rep1
|
PANC1 cells treated with BRD7552 for 72 hours
|
tissue: pancreatic carcinoma
cell line: PANC1
treatment: BRD7552
time: 72 h
|
Gene expression data from BRD7552 treated PANC-1 cells at 72-hour
|
| Sample_geo_accession | GSM1094292
| | Sample_status | Public on Mar 10 2013
| | Sample_submission_date | Mar 07 2013
| | Sample_last_update_date | Mar 10 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | PANC1 cells were treated in 6-well plate with BRD7552 (5uM) and DMSO at a final concentration of 01%.
| | Sample_growth_protocol_ch1 | PANC1 cells were cultured according to ATCC instructions.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extraction was performed using Qiagen Rneasy kit according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yuan,,Yuan
| | Sample_contact_email | yuan@broadinstitute.org
| | Sample_contact_institute | Broad Institute
| | Sample_contact_address | 7 Cambridge center
| | Sample_contact_city | Cambridge
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02142
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1094nnn/GSM1094292/suppl/GSM1094292_PANC1_B72_1.CEL.gz
| | Sample_series_id | GSE44946
| | Sample_data_row_count | 54675
| | |
|
GSM1094293 | GPL570 |
|
PANC1_BRD7552_3d_rep2
|
PANC1 cells treated with BRD7552 for 72 hours
|
tissue: pancreatic carcinoma
cell line: PANC1
treatment: BRD7552
time: 72 h
|
Gene expression data from BRD7552 treated PANC-1 cells at 72-hour
|
| Sample_geo_accession | GSM1094293
| | Sample_status | Public on Mar 10 2013
| | Sample_submission_date | Mar 07 2013
| | Sample_last_update_date | Mar 10 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | PANC1 cells were treated in 6-well plate with BRD7552 (5uM) and DMSO at a final concentration of 01%.
| | Sample_growth_protocol_ch1 | PANC1 cells were cultured according to ATCC instructions.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extraction was performed using Qiagen Rneasy kit according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yuan,,Yuan
| | Sample_contact_email | yuan@broadinstitute.org
| | Sample_contact_institute | Broad Institute
| | Sample_contact_address | 7 Cambridge center
| | Sample_contact_city | Cambridge
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02142
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1094nnn/GSM1094293/suppl/GSM1094293_PANC1_B72_2.CEL.gz
| | Sample_series_id | GSE44946
| | Sample_data_row_count | 54675
| | |
|
GSM1094294 | GPL570 |
|
PANC1_BRD7552_3d_rep3
|
PANC1 cells treated with BRD7552 for 72 hours
|
tissue: pancreatic carcinoma
cell line: PANC1
treatment: BRD7552
time: 72 h
|
Gene expression data from BRD7552 treated PANC-1 cells at 72-hour
|
| Sample_geo_accession | GSM1094294
| | Sample_status | Public on Mar 10 2013
| | Sample_submission_date | Mar 07 2013
| | Sample_last_update_date | Mar 10 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | PANC1 cells were treated in 6-well plate with BRD7552 (5uM) and DMSO at a final concentration of 01%.
| | Sample_growth_protocol_ch1 | PANC1 cells were cultured according to ATCC instructions.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extraction was performed using Qiagen Rneasy kit according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yuan,,Yuan
| | Sample_contact_email | yuan@broadinstitute.org
| | Sample_contact_institute | Broad Institute
| | Sample_contact_address | 7 Cambridge center
| | Sample_contact_city | Cambridge
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02142
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1094nnn/GSM1094294/suppl/GSM1094294_PANC1_B72_3.CEL.gz
| | Sample_series_id | GSE44946
| | Sample_data_row_count | 54675
| | |
|
| |
| |
Make groups for comparisons |
(2 groups will be compared at a time) |
|
| Select GSMs and click on "Add groups" |
Enter the group name here: |
|
|
|
