Search results for the GEO ID: GSE45022  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM1095922 | GPL570 |
|
NTG 1
|
HeLA tissue
|
cell type: HeLa
transfection: Dharmacon control siRNA
|
Gene expression data from HeLA cells and NTG control
|
| Sample_geo_accession | GSM1095922
| | Sample_status | Public on Apr 18 2013
| | Sample_submission_date | Mar 11 2013
| | Sample_last_update_date | Apr 18 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | No treatment other then nucleofaction
| | Sample_growth_protocol_ch1 | HeLa cells were nucleofacted with respective siRNAs and RNA was isolated after 72 hours
| | Sample_molecule_ch1 | polyA RNA
| | Sample_extract_protocol_ch1 | RNA was extracted using RNA easy mini kit Cat:74104
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip U133Plus2 Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with GCRMA (Bioconductor) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Tony,,McBryan
| | Sample_contact_email | tony@mcbryan.co.uk
| | Sample_contact_institute | University of Glasgow, Beatson Institute for Cancer Research
| | Sample_contact_address | Switchback Rd, Bearsden
| | Sample_contact_city | Glasgow
| | Sample_contact_zip/postal_code | G61 1BD
| | Sample_contact_country | United Kingdom
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1095nnn/GSM1095922/suppl/GSM1095922_0609_PA1_H_nu_NTG_r1.CEL.gz
| | Sample_series_id | GSE45022
| | Sample_series_id | GSE45025
| | Sample_data_row_count | 54675
| | |
|
GSM1095923 | GPL570 |
|
NTG 2
|
HeLA tissue
|
cell type: HeLa
transfection: Dharmacon control siRNA
|
Gene expression data from HeLA cells and NTG control
|
| Sample_geo_accession | GSM1095923
| | Sample_status | Public on Apr 18 2013
| | Sample_submission_date | Mar 11 2013
| | Sample_last_update_date | Apr 18 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | No treatment other then nucleofaction
| | Sample_growth_protocol_ch1 | HeLa cells were nucleofacted with respective siRNAs and RNA was isolated after 72 hours
| | Sample_molecule_ch1 | polyA RNA
| | Sample_extract_protocol_ch1 | RNA was extracted using RNA easy mini kit Cat:74104
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip U133Plus2 Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with GCRMA (Bioconductor) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Tony,,McBryan
| | Sample_contact_email | tony@mcbryan.co.uk
| | Sample_contact_institute | University of Glasgow, Beatson Institute for Cancer Research
| | Sample_contact_address | Switchback Rd, Bearsden
| | Sample_contact_city | Glasgow
| | Sample_contact_zip/postal_code | G61 1BD
| | Sample_contact_country | United Kingdom
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1095nnn/GSM1095923/suppl/GSM1095923_0609_PA2_H_nu_NTG_r2.CEL.gz
| | Sample_series_id | GSE45022
| | Sample_series_id | GSE45025
| | Sample_data_row_count | 54675
| | |
|
GSM1095924 | GPL570 |
|
NTG 3
|
HeLA tissue
|
cell type: HeLa
transfection: Dharmacon control siRNA
|
Gene expression data from HeLA cells and NTG control
|
| Sample_geo_accession | GSM1095924
| | Sample_status | Public on Apr 18 2013
| | Sample_submission_date | Mar 11 2013
| | Sample_last_update_date | Apr 18 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | No treatment other then nucleofaction
| | Sample_growth_protocol_ch1 | HeLa cells were nucleofacted with respective siRNAs and RNA was isolated after 72 hours
| | Sample_molecule_ch1 | polyA RNA
| | Sample_extract_protocol_ch1 | RNA was extracted using RNA easy mini kit Cat:74104
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip U133Plus2 Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with GCRMA (Bioconductor) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Tony,,McBryan
| | Sample_contact_email | tony@mcbryan.co.uk
| | Sample_contact_institute | University of Glasgow, Beatson Institute for Cancer Research
| | Sample_contact_address | Switchback Rd, Bearsden
| | Sample_contact_city | Glasgow
| | Sample_contact_zip/postal_code | G61 1BD
| | Sample_contact_country | United Kingdom
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1095nnn/GSM1095924/suppl/GSM1095924_0609_PA3_H_nu_NTG_r3.CEL.gz
| | Sample_series_id | GSE45022
| | Sample_series_id | GSE45025
| | Sample_data_row_count | 54675
| | |
|
GSM1095925 | GPL570 |
|
NTG 4
|
HeLA tissue
|
cell type: HeLa
transfection: Dharmacon control siRNA
|
Gene expression data from HeLA cells and NTG control
|
| Sample_geo_accession | GSM1095925
| | Sample_status | Public on Apr 18 2013
| | Sample_submission_date | Mar 11 2013
| | Sample_last_update_date | Apr 18 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | No treatment other then nucleofaction
| | Sample_growth_protocol_ch1 | HeLa cells were nucleofacted with respective siRNAs and RNA was isolated after 72 hours
| | Sample_molecule_ch1 | polyA RNA
| | Sample_extract_protocol_ch1 | RNA was extracted using RNA easy mini kit Cat:74104
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip U133Plus2 Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with GCRMA (Bioconductor) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Tony,,McBryan
| | Sample_contact_email | tony@mcbryan.co.uk
| | Sample_contact_institute | University of Glasgow, Beatson Institute for Cancer Research
| | Sample_contact_address | Switchback Rd, Bearsden
| | Sample_contact_city | Glasgow
| | Sample_contact_zip/postal_code | G61 1BD
| | Sample_contact_country | United Kingdom
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1095nnn/GSM1095925/suppl/GSM1095925_0609_PA4_H_nu_NTG_r4.CEL.gz
| | Sample_series_id | GSE45022
| | Sample_series_id | GSE45025
| | Sample_data_row_count | 54675
| | |
|
GSM1095926 | GPL570 |
|
siHIRA 1
|
HeLA tissue
|
cell type: HeLa
transfection: HIRA siRNA
|
Gene expression data from HeLA cells and siHIRA knockdown
|
| Sample_geo_accession | GSM1095926
| | Sample_status | Public on Apr 18 2013
| | Sample_submission_date | Mar 11 2013
| | Sample_last_update_date | Apr 18 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | No treatment other then nucleofaction
| | Sample_growth_protocol_ch1 | HeLa cells were nucleofacted with respective siRNAs and RNA was isolated after 72 hours
| | Sample_molecule_ch1 | polyA RNA
| | Sample_extract_protocol_ch1 | RNA was extracted using RNA easy mini kit Cat:74104
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip U133Plus2 Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with GCRMA (Bioconductor) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Tony,,McBryan
| | Sample_contact_email | tony@mcbryan.co.uk
| | Sample_contact_institute | University of Glasgow, Beatson Institute for Cancer Research
| | Sample_contact_address | Switchback Rd, Bearsden
| | Sample_contact_city | Glasgow
| | Sample_contact_zip/postal_code | G61 1BD
| | Sample_contact_country | United Kingdom
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1095nnn/GSM1095926/suppl/GSM1095926_0609_PA5_H_nu_siHIRA_r1.CEL.gz
| | Sample_series_id | GSE45022
| | Sample_series_id | GSE45025
| | Sample_data_row_count | 54675
| | |
|
GSM1095927 | GPL570 |
|
siHIRA 2
|
HeLA tissue
|
cell type: HeLa
transfection: HIRA siRNA
|
Gene expression data from HeLA cells and siHIRA knockdown
|
| Sample_geo_accession | GSM1095927
| | Sample_status | Public on Apr 18 2013
| | Sample_submission_date | Mar 11 2013
| | Sample_last_update_date | Apr 18 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | No treatment other then nucleofaction
| | Sample_growth_protocol_ch1 | HeLa cells were nucleofacted with respective siRNAs and RNA was isolated after 72 hours
| | Sample_molecule_ch1 | polyA RNA
| | Sample_extract_protocol_ch1 | RNA was extracted using RNA easy mini kit Cat:74104
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip U133Plus2 Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with GCRMA (Bioconductor) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Tony,,McBryan
| | Sample_contact_email | tony@mcbryan.co.uk
| | Sample_contact_institute | University of Glasgow, Beatson Institute for Cancer Research
| | Sample_contact_address | Switchback Rd, Bearsden
| | Sample_contact_city | Glasgow
| | Sample_contact_zip/postal_code | G61 1BD
| | Sample_contact_country | United Kingdom
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1095nnn/GSM1095927/suppl/GSM1095927_0609_PA6_H_nu_siHIRA_r2.CEL.gz
| | Sample_series_id | GSE45022
| | Sample_series_id | GSE45025
| | Sample_data_row_count | 54675
| | |
|
GSM1095928 | GPL570 |
|
siHIRA 3
|
HeLA tissue
|
cell type: HeLa
transfection: HIRA siRNA
|
Gene expression data from HeLA cells and siHIRA knockdown
|
| Sample_geo_accession | GSM1095928
| | Sample_status | Public on Apr 18 2013
| | Sample_submission_date | Mar 11 2013
| | Sample_last_update_date | Apr 18 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | No treatment other then nucleofaction
| | Sample_growth_protocol_ch1 | HeLa cells were nucleofacted with respective siRNAs and RNA was isolated after 72 hours
| | Sample_molecule_ch1 | polyA RNA
| | Sample_extract_protocol_ch1 | RNA was extracted using RNA easy mini kit Cat:74104
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip U133Plus2 Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with GCRMA (Bioconductor) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Tony,,McBryan
| | Sample_contact_email | tony@mcbryan.co.uk
| | Sample_contact_institute | University of Glasgow, Beatson Institute for Cancer Research
| | Sample_contact_address | Switchback Rd, Bearsden
| | Sample_contact_city | Glasgow
| | Sample_contact_zip/postal_code | G61 1BD
| | Sample_contact_country | United Kingdom
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1095nnn/GSM1095928/suppl/GSM1095928_0609_PA7_H_nu_siHIRA_r3.CEL.gz
| | Sample_series_id | GSE45022
| | Sample_series_id | GSE45025
| | Sample_data_row_count | 54675
| | |
|
GSM1095929 | GPL570 |
|
siHIRA 4
|
HeLA tissue
|
cell type: HeLa
transfection: HIRA siRNA
|
Gene expression data from HeLA cells and siHIRA knockdown
|
| Sample_geo_accession | GSM1095929
| | Sample_status | Public on Apr 18 2013
| | Sample_submission_date | Mar 11 2013
| | Sample_last_update_date | Apr 18 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | No treatment other then nucleofaction
| | Sample_growth_protocol_ch1 | HeLa cells were nucleofacted with respective siRNAs and RNA was isolated after 72 hours
| | Sample_molecule_ch1 | polyA RNA
| | Sample_extract_protocol_ch1 | RNA was extracted using RNA easy mini kit Cat:74104
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip U133Plus2 Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with GCRMA (Bioconductor) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Tony,,McBryan
| | Sample_contact_email | tony@mcbryan.co.uk
| | Sample_contact_institute | University of Glasgow, Beatson Institute for Cancer Research
| | Sample_contact_address | Switchback Rd, Bearsden
| | Sample_contact_city | Glasgow
| | Sample_contact_zip/postal_code | G61 1BD
| | Sample_contact_country | United Kingdom
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1095nnn/GSM1095929/suppl/GSM1095929_0609_PA8_H_nu_siHIRA_r4.CEL.gz
| | Sample_series_id | GSE45022
| | Sample_series_id | GSE45025
| | Sample_data_row_count | 54675
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