Search results for the GEO ID: GSE45030  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM1095995 | GPL570 |
|
ag04405_p5_hipsc
|
induced pluripotent stem cells
|
cell type: hiPSC
genotype/variation: hiPSC derived from AT patient
|
|
| Sample_geo_accession | GSM1095995
| | Sample_status | Public on Apr 01 2013
| | Sample_submission_date | Mar 11 2013
| | Sample_last_update_date | Apr 01 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | all grown in standard conditions: hESC/hiPSC (in KO serum replacer, hESC media), FBs (Dmem +10% FBS), NPCs (Dmem, N2, B27, Egf, Fgf)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cells were lysed, and run through Stratagene Total RNA isolation kit
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Labeling was performed with Ambion MESSAGEAMP PREMIER kit (cat#: 4383452)
| | Sample_hyb_protocol | Labeled cRNA was mixed with hybridization mix according to Affymetrix protocol and hybridized in Affymetrix GeneChip hybridization oven 645 at 45C for 16 hours with rotation at 60 rpm
| | Sample_scan_protocol | Scanning was performed on Affymetrix 7G scanner with target intensity 500
| | Sample_data_processing | Cel files were imported into Genespring and RMA normalized. Probesets not expressed in at least 10% of samples were eliminated
| | Sample_platform_id | GPL570
| | Sample_contact_name | William,,Lowry
| | Sample_contact_email | blowry@ucla.edu
| | Sample_contact_laboratory | Lowry
| | Sample_contact_institute | UCLA
| | Sample_contact_address | 621 Charles Young
| | Sample_contact_city | Los Angeles
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 90095
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1095nnn/GSM1095995/suppl/GSM1095995_ag04405_p5_hipsc.CEL.gz
| | Sample_series_id | GSE45030
| | Sample_data_row_count | 37424
| | |
|
GSM1095996 | GPL570 |
|
ag04405_p5_p2_npc
|
neural progenitor cell
|
cell type: NPC
genotype/variation: NPCs derived from A-T patient
|
|
| Sample_geo_accession | GSM1095996
| | Sample_status | Public on Apr 01 2013
| | Sample_submission_date | Mar 11 2013
| | Sample_last_update_date | Apr 01 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | all grown in standard conditions: hESC/hiPSC (in KO serum replacer, hESC media), FBs (Dmem +10% FBS), NPCs (Dmem, N2, B27, Egf, Fgf)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cells were lysed, and run through Stratagene Total RNA isolation kit
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Labeling was performed with Ambion MESSAGEAMP PREMIER kit (cat#: 4383452)
| | Sample_hyb_protocol | Labeled cRNA was mixed with hybridization mix according to Affymetrix protocol and hybridized in Affymetrix GeneChip hybridization oven 645 at 45C for 16 hours with rotation at 60 rpm
| | Sample_scan_protocol | Scanning was performed on Affymetrix 7G scanner with target intensity 500
| | Sample_data_processing | Cel files were imported into Genespring and RMA normalized. Probesets not expressed in at least 10% of samples were eliminated
| | Sample_platform_id | GPL570
| | Sample_contact_name | William,,Lowry
| | Sample_contact_email | blowry@ucla.edu
| | Sample_contact_laboratory | Lowry
| | Sample_contact_institute | UCLA
| | Sample_contact_address | 621 Charles Young
| | Sample_contact_city | Los Angeles
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 90095
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1095nnn/GSM1095996/suppl/GSM1095996_ag04405_p5_p2_npc.CEL.gz
| | Sample_series_id | GSE45030
| | Sample_data_row_count | 37424
| | |
|
GSM1095997 | GPL570 |
|
gm01588_p7_hipsc
|
induced pluripotent stem cells
|
cell type: hiPSC
genotype/variation: hiPSC derived from AT patient
|
|
| Sample_geo_accession | GSM1095997
| | Sample_status | Public on Apr 01 2013
| | Sample_submission_date | Mar 11 2013
| | Sample_last_update_date | Apr 01 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | all grown in standard conditions: hESC/hiPSC (in KO serum replacer, hESC media), FBs (Dmem +10% FBS), NPCs (Dmem, N2, B27, Egf, Fgf)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cells were lysed, and run through Stratagene Total RNA isolation kit
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Labeling was performed with Ambion MESSAGEAMP PREMIER kit (cat#: 4383452)
| | Sample_hyb_protocol | Labeled cRNA was mixed with hybridization mix according to Affymetrix protocol and hybridized in Affymetrix GeneChip hybridization oven 645 at 45C for 16 hours with rotation at 60 rpm
| | Sample_scan_protocol | Scanning was performed on Affymetrix 7G scanner with target intensity 500
| | Sample_data_processing | Cel files were imported into Genespring and RMA normalized. Probesets not expressed in at least 10% of samples were eliminated
| | Sample_platform_id | GPL570
| | Sample_contact_name | William,,Lowry
| | Sample_contact_email | blowry@ucla.edu
| | Sample_contact_laboratory | Lowry
| | Sample_contact_institute | UCLA
| | Sample_contact_address | 621 Charles Young
| | Sample_contact_city | Los Angeles
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 90095
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1095nnn/GSM1095997/suppl/GSM1095997_gm01588_p7_hipsc.CEL.gz
| | Sample_series_id | GSE45030
| | Sample_data_row_count | 37424
| | |
|
GSM1095998 | GPL570 |
|
gm015588_p7_p2_npc
|
neural progenitor cell
|
cell type: NPC
genotype/variation: NPCs derived from A-T patient
|
|
| Sample_geo_accession | GSM1095998
| | Sample_status | Public on Apr 01 2013
| | Sample_submission_date | Mar 11 2013
| | Sample_last_update_date | Apr 01 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | all grown in standard conditions: hESC/hiPSC (in KO serum replacer, hESC media), FBs (Dmem +10% FBS), NPCs (Dmem, N2, B27, Egf, Fgf)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cells were lysed, and run through Stratagene Total RNA isolation kit
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Labeling was performed with Ambion MESSAGEAMP PREMIER kit (cat#: 4383452)
| | Sample_hyb_protocol | Labeled cRNA was mixed with hybridization mix according to Affymetrix protocol and hybridized in Affymetrix GeneChip hybridization oven 645 at 45C for 16 hours with rotation at 60 rpm
| | Sample_scan_protocol | Scanning was performed on Affymetrix 7G scanner with target intensity 500
| | Sample_data_processing | Cel files were imported into Genespring and RMA normalized. Probesets not expressed in at least 10% of samples were eliminated
| | Sample_platform_id | GPL570
| | Sample_contact_name | William,,Lowry
| | Sample_contact_email | blowry@ucla.edu
| | Sample_contact_laboratory | Lowry
| | Sample_contact_institute | UCLA
| | Sample_contact_address | 621 Charles Young
| | Sample_contact_city | Los Angeles
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 90095
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1095nnn/GSM1095998/suppl/GSM1095998_gm015588_p7_p2_npc.CEL.gz
| | Sample_series_id | GSE45030
| | Sample_data_row_count | 37424
| | |
|
GSM1095999 | GPL570 |
|
H1 p60
|
wildtype hESCs
|
cell type: hESC
genotype/variation: wildtype hESCs
|
|
| Sample_geo_accession | GSM1095999
| | Sample_status | Public on Apr 01 2013
| | Sample_submission_date | Mar 11 2013
| | Sample_last_update_date | Jun 10 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | all grown in standard conditions: hESC/hiPSC (in KO serum replacer, hESC media), FBs (Dmem +10% FBS), NPCs (Dmem, N2, B27, Egf, Fgf)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cells were lysed, and run through Stratagene Total RNA isolation kit
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Labeling was performed with Ambion MESSAGEAMP PREMIER kit (cat#: 4383452)
| | Sample_hyb_protocol | Labeled cRNA was mixed with hybridization mix according to Affymetrix protocol and hybridized in Affymetrix GeneChip hybridization oven 645 at 45C for 16 hours with rotation at 60 rpm
| | Sample_scan_protocol | Scanning was performed on Affymetrix 7G scanner with target intensity 500
| | Sample_data_processing | Cel files were imported into Genespring and RMA normalized. Probesets not expressed in at least 10% of samples were eliminated
| | Sample_platform_id | GPL570
| | Sample_contact_name | William,,Lowry
| | Sample_contact_email | blowry@ucla.edu
| | Sample_contact_laboratory | Lowry
| | Sample_contact_institute | UCLA
| | Sample_contact_address | 621 Charles Young
| | Sample_contact_city | Los Angeles
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 90095
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1095nnn/GSM1095999/suppl/GSM1095999_H1_p60.CEL.gz
| | Sample_series_id | GSE45030
| | Sample_data_row_count | 37424
| | |
|
GSM1096000 | GPL570 |
|
H9 NPC p1
|
neural progenitor cell
|
cell type: hNPC
genotype/variation: NPCs derived from hESCs
|
|
| Sample_geo_accession | GSM1096000
| | Sample_status | Public on Apr 01 2013
| | Sample_submission_date | Mar 11 2013
| | Sample_last_update_date | Jun 10 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | all grown in standard conditions: hESC/hiPSC (in KO serum replacer, hESC media), FBs (Dmem +10% FBS), NPCs (Dmem, N2, B27, Egf, Fgf)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cells were lysed, and run through Stratagene Total RNA isolation kit
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Labeling was performed with Ambion MESSAGEAMP PREMIER kit (cat#: 4383452)
| | Sample_hyb_protocol | Labeled cRNA was mixed with hybridization mix according to Affymetrix protocol and hybridized in Affymetrix GeneChip hybridization oven 645 at 45C for 16 hours with rotation at 60 rpm
| | Sample_scan_protocol | Scanning was performed on Affymetrix 7G scanner with target intensity 500
| | Sample_data_processing | Cel files were imported into Genespring and RMA normalized. Probesets not expressed in at least 10% of samples were eliminated
| | Sample_platform_id | GPL570
| | Sample_contact_name | William,,Lowry
| | Sample_contact_email | blowry@ucla.edu
| | Sample_contact_laboratory | Lowry
| | Sample_contact_institute | UCLA
| | Sample_contact_address | 621 Charles Young
| | Sample_contact_city | Los Angeles
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 90095
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1096nnn/GSM1096000/suppl/GSM1096000_H9_NPC_p1.CEL.gz
| | Sample_series_id | GSE45030
| | Sample_data_row_count | 37424
| | |
|
GSM1096001 | GPL570 |
|
H9 p44
|
wildtype hESCs
|
cell type: hESC
genotype/variation: wildtype hESCs
|
|
| Sample_geo_accession | GSM1096001
| | Sample_status | Public on Apr 01 2013
| | Sample_submission_date | Mar 11 2013
| | Sample_last_update_date | Jun 10 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | all grown in standard conditions: hESC/hiPSC (in KO serum replacer, hESC media), FBs (Dmem +10% FBS), NPCs (Dmem, N2, B27, Egf, Fgf)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cells were lysed, and run through Stratagene Total RNA isolation kit
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Labeling was performed with Ambion MESSAGEAMP PREMIER kit (cat#: 4383452)
| | Sample_hyb_protocol | Labeled cRNA was mixed with hybridization mix according to Affymetrix protocol and hybridized in Affymetrix GeneChip hybridization oven 645 at 45C for 16 hours with rotation at 60 rpm
| | Sample_scan_protocol | Scanning was performed on Affymetrix 7G scanner with target intensity 500
| | Sample_data_processing | Cel files were imported into Genespring and RMA normalized. Probesets not expressed in at least 10% of samples were eliminated
| | Sample_platform_id | GPL570
| | Sample_contact_name | William,,Lowry
| | Sample_contact_email | blowry@ucla.edu
| | Sample_contact_laboratory | Lowry
| | Sample_contact_institute | UCLA
| | Sample_contact_address | 621 Charles Young
| | Sample_contact_city | Los Angeles
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 90095
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1096nnn/GSM1096001/suppl/GSM1096001_H9_p44.CEL.gz
| | Sample_series_id | GSE45030
| | Sample_data_row_count | 37424
| | |
|
GSM1096002 | GPL570 |
|
hiPSC 3975.2 p9
|
wildtype hiPSCs
|
cell type: hiPSC
genotype/variation: wildtype hiPSCs
|
|
| Sample_geo_accession | GSM1096002
| | Sample_status | Public on Apr 01 2013
| | Sample_submission_date | Mar 11 2013
| | Sample_last_update_date | Apr 01 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | all grown in standard conditions: hESC/hiPSC (in KO serum replacer, hESC media), FBs (Dmem +10% FBS), NPCs (Dmem, N2, B27, Egf, Fgf)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cells were lysed, and run through Stratagene Total RNA isolation kit
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Labeling was performed with Ambion MESSAGEAMP PREMIER kit (cat#: 4383452)
| | Sample_hyb_protocol | Labeled cRNA was mixed with hybridization mix according to Affymetrix protocol and hybridized in Affymetrix GeneChip hybridization oven 645 at 45C for 16 hours with rotation at 60 rpm
| | Sample_scan_protocol | Scanning was performed on Affymetrix 7G scanner with target intensity 500
| | Sample_data_processing | Cel files were imported into Genespring and RMA normalized. Probesets not expressed in at least 10% of samples were eliminated
| | Sample_platform_id | GPL570
| | Sample_contact_name | William,,Lowry
| | Sample_contact_email | blowry@ucla.edu
| | Sample_contact_laboratory | Lowry
| | Sample_contact_institute | UCLA
| | Sample_contact_address | 621 Charles Young
| | Sample_contact_city | Los Angeles
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 90095
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1096nnn/GSM1096002/suppl/GSM1096002_hiPSC_3975.2_p9.CEL.gz
| | Sample_series_id | GSE45030
| | Sample_data_row_count | 37424
| | |
|
GSM1096003 | GPL570 |
|
hiPSC 3975.4 p6
|
wildtype hiPSCs
|
cell type: hiPSC
genotype/variation: wildtype hiPSCs
|
|
| Sample_geo_accession | GSM1096003
| | Sample_status | Public on Apr 01 2013
| | Sample_submission_date | Mar 11 2013
| | Sample_last_update_date | Apr 01 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | all grown in standard conditions: hESC/hiPSC (in KO serum replacer, hESC media), FBs (Dmem +10% FBS), NPCs (Dmem, N2, B27, Egf, Fgf)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cells were lysed, and run through Stratagene Total RNA isolation kit
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Labeling was performed with Ambion MESSAGEAMP PREMIER kit (cat#: 4383452)
| | Sample_hyb_protocol | Labeled cRNA was mixed with hybridization mix according to Affymetrix protocol and hybridized in Affymetrix GeneChip hybridization oven 645 at 45C for 16 hours with rotation at 60 rpm
| | Sample_scan_protocol | Scanning was performed on Affymetrix 7G scanner with target intensity 500
| | Sample_data_processing | Cel files were imported into Genespring and RMA normalized. Probesets not expressed in at least 10% of samples were eliminated
| | Sample_platform_id | GPL570
| | Sample_contact_name | William,,Lowry
| | Sample_contact_email | blowry@ucla.edu
| | Sample_contact_laboratory | Lowry
| | Sample_contact_institute | UCLA
| | Sample_contact_address | 621 Charles Young
| | Sample_contact_city | Los Angeles
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 90095
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1096nnn/GSM1096003/suppl/GSM1096003_hiPSC_3975.4_p6.CEL.gz
| | Sample_series_id | GSE45030
| | Sample_data_row_count | 37424
| | |
|
GSM1096004 | GPL570 |
|
hiPSC E
|
wildtype hiPSCs
|
cell type: hiPSC
genotype/variation: wildtype hiPSCs
|
|
| Sample_geo_accession | GSM1096004
| | Sample_status | Public on Apr 01 2013
| | Sample_submission_date | Mar 11 2013
| | Sample_last_update_date | Jun 10 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | all grown in standard conditions: hESC/hiPSC (in KO serum replacer, hESC media), FBs (Dmem +10% FBS), NPCs (Dmem, N2, B27, Egf, Fgf)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cells were lysed, and run through Stratagene Total RNA isolation kit
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Labeling was performed with Ambion MESSAGEAMP PREMIER kit (cat#: 4383452)
| | Sample_hyb_protocol | Labeled cRNA was mixed with hybridization mix according to Affymetrix protocol and hybridized in Affymetrix GeneChip hybridization oven 645 at 45C for 16 hours with rotation at 60 rpm
| | Sample_scan_protocol | Scanning was performed on Affymetrix 7G scanner with target intensity 500
| | Sample_data_processing | Cel files were imported into Genespring and RMA normalized. Probesets not expressed in at least 10% of samples were eliminated
| | Sample_platform_id | GPL570
| | Sample_contact_name | William,,Lowry
| | Sample_contact_email | blowry@ucla.edu
| | Sample_contact_laboratory | Lowry
| | Sample_contact_institute | UCLA
| | Sample_contact_address | 621 Charles Young
| | Sample_contact_city | Los Angeles
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 90095
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1096nnn/GSM1096004/suppl/GSM1096004_hiPSC_E.CEL.gz
| | Sample_series_id | GSE45030
| | Sample_data_row_count | 37424
| | |
|
GSM1096005 | GPL570 |
|
hiPSC IMR9.4 p9
|
wildtype hiPSCs
|
cell type: hiPSC
genotype/variation: wildtype hiPSCs
|
|
| Sample_geo_accession | GSM1096005
| | Sample_status | Public on Apr 01 2013
| | Sample_submission_date | Mar 11 2013
| | Sample_last_update_date | Apr 01 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | all grown in standard conditions: hESC/hiPSC (in KO serum replacer, hESC media), FBs (Dmem +10% FBS), NPCs (Dmem, N2, B27, Egf, Fgf)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cells were lysed, and run through Stratagene Total RNA isolation kit
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Labeling was performed with Ambion MESSAGEAMP PREMIER kit (cat#: 4383452)
| | Sample_hyb_protocol | Labeled cRNA was mixed with hybridization mix according to Affymetrix protocol and hybridized in Affymetrix GeneChip hybridization oven 645 at 45C for 16 hours with rotation at 60 rpm
| | Sample_scan_protocol | Scanning was performed on Affymetrix 7G scanner with target intensity 500
| | Sample_data_processing | Cel files were imported into Genespring and RMA normalized. Probesets not expressed in at least 10% of samples were eliminated
| | Sample_platform_id | GPL570
| | Sample_contact_name | William,,Lowry
| | Sample_contact_email | blowry@ucla.edu
| | Sample_contact_laboratory | Lowry
| | Sample_contact_institute | UCLA
| | Sample_contact_address | 621 Charles Young
| | Sample_contact_city | Los Angeles
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 90095
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1096nnn/GSM1096005/suppl/GSM1096005_hiPSC_IMR9.4_p9.CEL.gz
| | Sample_series_id | GSE45030
| | Sample_data_row_count | 37424
| | |
|
GSM1096006 | GPL570 |
|
hiPSC-E NPC p1
|
NPCs derived from hESCs
|
cell type: NPC
genotype/variation: NPCs derived from hiPSCs
|
|
| Sample_geo_accession | GSM1096006
| | Sample_status | Public on Apr 01 2013
| | Sample_submission_date | Mar 11 2013
| | Sample_last_update_date | Jun 10 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | all grown in standard conditions: hESC/hiPSC (in KO serum replacer, hESC media), FBs (Dmem +10% FBS), NPCs (Dmem, N2, B27, Egf, Fgf)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cells were lysed, and run through Stratagene Total RNA isolation kit
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Labeling was performed with Ambion MESSAGEAMP PREMIER kit (cat#: 4383452)
| | Sample_hyb_protocol | Labeled cRNA was mixed with hybridization mix according to Affymetrix protocol and hybridized in Affymetrix GeneChip hybridization oven 645 at 45C for 16 hours with rotation at 60 rpm
| | Sample_scan_protocol | Scanning was performed on Affymetrix 7G scanner with target intensity 500
| | Sample_data_processing | Cel files were imported into Genespring and RMA normalized. Probesets not expressed in at least 10% of samples were eliminated
| | Sample_platform_id | GPL570
| | Sample_contact_name | William,,Lowry
| | Sample_contact_email | blowry@ucla.edu
| | Sample_contact_laboratory | Lowry
| | Sample_contact_institute | UCLA
| | Sample_contact_address | 621 Charles Young
| | Sample_contact_city | Los Angeles
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 90095
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1096nnn/GSM1096006/suppl/GSM1096006_hiPSC-E_NPC_p1.CEL.gz
| | Sample_series_id | GSE45030
| | Sample_data_row_count | 37424
| | |
|
GSM1096007 | GPL570 |
|
HSF1 NPC p1 (1)
|
NPCs derived from hiPSCs
|
cell type: NPC
genotype/variation: NPCs derived from hESCs
|
|
| Sample_geo_accession | GSM1096007
| | Sample_status | Public on Apr 01 2013
| | Sample_submission_date | Mar 11 2013
| | Sample_last_update_date | Jun 10 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | all grown in standard conditions: hESC/hiPSC (in KO serum replacer, hESC media), FBs (Dmem +10% FBS), NPCs (Dmem, N2, B27, Egf, Fgf)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cells were lysed, and run through Stratagene Total RNA isolation kit
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Labeling was performed with Ambion MESSAGEAMP PREMIER kit (cat#: 4383452)
| | Sample_hyb_protocol | Labeled cRNA was mixed with hybridization mix according to Affymetrix protocol and hybridized in Affymetrix GeneChip hybridization oven 645 at 45C for 16 hours with rotation at 60 rpm
| | Sample_scan_protocol | Scanning was performed on Affymetrix 7G scanner with target intensity 500
| | Sample_data_processing | Cel files were imported into Genespring and RMA normalized. Probesets not expressed in at least 10% of samples were eliminated
| | Sample_platform_id | GPL570
| | Sample_contact_name | William,,Lowry
| | Sample_contact_email | blowry@ucla.edu
| | Sample_contact_laboratory | Lowry
| | Sample_contact_institute | UCLA
| | Sample_contact_address | 621 Charles Young
| | Sample_contact_city | Los Angeles
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 90095
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1096nnn/GSM1096007/suppl/GSM1096007_HSF1_NPC_p1_1_.CEL.gz
| | Sample_series_id | GSE45030
| | Sample_data_row_count | 37424
| | |
|
GSM1096008 | GPL570 |
|
HSF1 p51b
|
wildtype hESCs
|
cell type: hESCs
genotype/variation: wildtype hESCs
|
|
| Sample_geo_accession | GSM1096008
| | Sample_status | Public on Apr 01 2013
| | Sample_submission_date | Mar 11 2013
| | Sample_last_update_date | Jun 10 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | all grown in standard conditions: hESC/hiPSC (in KO serum replacer, hESC media), FBs (Dmem +10% FBS), NPCs (Dmem, N2, B27, Egf, Fgf)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cells were lysed, and run through Stratagene Total RNA isolation kit
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Labeling was performed with Ambion MESSAGEAMP PREMIER kit (cat#: 4383452)
| | Sample_hyb_protocol | Labeled cRNA was mixed with hybridization mix according to Affymetrix protocol and hybridized in Affymetrix GeneChip hybridization oven 645 at 45C for 16 hours with rotation at 60 rpm
| | Sample_scan_protocol | Scanning was performed on Affymetrix 7G scanner with target intensity 500
| | Sample_data_processing | Cel files were imported into Genespring and RMA normalized. Probesets not expressed in at least 10% of samples were eliminated
| | Sample_platform_id | GPL570
| | Sample_contact_name | William,,Lowry
| | Sample_contact_email | blowry@ucla.edu
| | Sample_contact_laboratory | Lowry
| | Sample_contact_institute | UCLA
| | Sample_contact_address | 621 Charles Young
| | Sample_contact_city | Los Angeles
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 90095
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1096nnn/GSM1096008/suppl/GSM1096008_HSF1_p51b.CEL.gz
| | Sample_series_id | GSE45030
| | Sample_data_row_count | 37424
| | |
|
GSM1096009 | GPL570 |
|
IMR90 - EMB fem
|
wildtype fibroblasts
|
cell type: FBs
genotype/variation: wildtype fibroblasts
|
|
| Sample_geo_accession | GSM1096009
| | Sample_status | Public on Apr 01 2013
| | Sample_submission_date | Mar 11 2013
| | Sample_last_update_date | Jun 10 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | all grown in standard conditions: hESC/hiPSC (in KO serum replacer, hESC media), FBs (Dmem +10% FBS), NPCs (Dmem, N2, B27, Egf, Fgf)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cells were lysed, and run through Stratagene Total RNA isolation kit
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Labeling was performed with Ambion MESSAGEAMP PREMIER kit (cat#: 4383452)
| | Sample_hyb_protocol | Labeled cRNA was mixed with hybridization mix according to Affymetrix protocol and hybridized in Affymetrix GeneChip hybridization oven 645 at 45C for 16 hours with rotation at 60 rpm
| | Sample_scan_protocol | Scanning was performed on Affymetrix 7G scanner with target intensity 500
| | Sample_data_processing | Cel files were imported into Genespring and RMA normalized. Probesets not expressed in at least 10% of samples were eliminated
| | Sample_platform_id | GPL570
| | Sample_contact_name | William,,Lowry
| | Sample_contact_email | blowry@ucla.edu
| | Sample_contact_laboratory | Lowry
| | Sample_contact_institute | UCLA
| | Sample_contact_address | 621 Charles Young
| | Sample_contact_city | Los Angeles
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 90095
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1096nnn/GSM1096009/suppl/GSM1096009_IMR90_-_EMB_fem.CEL.gz
| | Sample_series_id | GSE45030
| | Sample_data_row_count | 37424
| | |
|
GSM1096010 | GPL570 |
|
NHDF1- neo male
|
wildtype fibroblasts
|
cell type: FBs
genotype/variation: wildtype fibroblasts
|
|
| Sample_geo_accession | GSM1096010
| | Sample_status | Public on Apr 01 2013
| | Sample_submission_date | Mar 11 2013
| | Sample_last_update_date | Apr 01 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | all grown in standard conditions: hESC/hiPSC (in KO serum replacer, hESC media), FBs (Dmem +10% FBS), NPCs (Dmem, N2, B27, Egf, Fgf)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cells were lysed, and run through Stratagene Total RNA isolation kit
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Labeling was performed with Ambion MESSAGEAMP PREMIER kit (cat#: 4383452)
| | Sample_hyb_protocol | Labeled cRNA was mixed with hybridization mix according to Affymetrix protocol and hybridized in Affymetrix GeneChip hybridization oven 645 at 45C for 16 hours with rotation at 60 rpm
| | Sample_scan_protocol | Scanning was performed on Affymetrix 7G scanner with target intensity 500
| | Sample_data_processing | Cel files were imported into Genespring and RMA normalized. Probesets not expressed in at least 10% of samples were eliminated
| | Sample_platform_id | GPL570
| | Sample_contact_name | William,,Lowry
| | Sample_contact_email | blowry@ucla.edu
| | Sample_contact_laboratory | Lowry
| | Sample_contact_institute | UCLA
| | Sample_contact_address | 621 Charles Young
| | Sample_contact_city | Los Angeles
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 90095
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1096nnn/GSM1096010/suppl/GSM1096010_NHDF1-_neo_male.CEL.gz
| | Sample_series_id | GSE45030
| | Sample_data_row_count | 37424
| | |
|
GSM1096011 | GPL570 |
|
NHDF3284 - Ad fem
|
wildtype fibroblasts
|
cell type: FBs
genotype/variation: wildtype fibroblasts
|
|
| Sample_geo_accession | GSM1096011
| | Sample_status | Public on Apr 01 2013
| | Sample_submission_date | Mar 11 2013
| | Sample_last_update_date | Jun 10 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | all grown in standard conditions: hESC/hiPSC (in KO serum replacer, hESC media), FBs (Dmem +10% FBS), NPCs (Dmem, N2, B27, Egf, Fgf)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cells were lysed, and run through Stratagene Total RNA isolation kit
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Labeling was performed with Ambion MESSAGEAMP PREMIER kit (cat#: 4383452)
| | Sample_hyb_protocol | Labeled cRNA was mixed with hybridization mix according to Affymetrix protocol and hybridized in Affymetrix GeneChip hybridization oven 645 at 45C for 16 hours with rotation at 60 rpm
| | Sample_scan_protocol | Scanning was performed on Affymetrix 7G scanner with target intensity 500
| | Sample_data_processing | Cel files were imported into Genespring and RMA normalized. Probesets not expressed in at least 10% of samples were eliminated
| | Sample_platform_id | GPL570
| | Sample_contact_name | William,,Lowry
| | Sample_contact_email | blowry@ucla.edu
| | Sample_contact_laboratory | Lowry
| | Sample_contact_institute | UCLA
| | Sample_contact_address | 621 Charles Young
| | Sample_contact_city | Los Angeles
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 90095
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1096nnn/GSM1096011/suppl/GSM1096011_NHDF3284_-_Ad_fem.CEL.gz
| | Sample_series_id | GSE45030
| | Sample_data_row_count | 37424
| | |
|
GSM1096012 | GPL570 |
|
NHDF3535 p5b - Ad fem
|
wildtype fibroblasts
|
cell type: FBs
genotype/variation: wildtype fibroblasts
|
|
| Sample_geo_accession | GSM1096012
| | Sample_status | Public on Apr 01 2013
| | Sample_submission_date | Mar 11 2013
| | Sample_last_update_date | Jun 10 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | all grown in standard conditions: hESC/hiPSC (in KO serum replacer, hESC media), FBs (Dmem +10% FBS), NPCs (Dmem, N2, B27, Egf, Fgf)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cells were lysed, and run through Stratagene Total RNA isolation kit
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Labeling was performed with Ambion MESSAGEAMP PREMIER kit (cat#: 4383452)
| | Sample_hyb_protocol | Labeled cRNA was mixed with hybridization mix according to Affymetrix protocol and hybridized in Affymetrix GeneChip hybridization oven 645 at 45C for 16 hours with rotation at 60 rpm
| | Sample_scan_protocol | Scanning was performed on Affymetrix 7G scanner with target intensity 500
| | Sample_data_processing | Cel files were imported into Genespring and RMA normalized. Probesets not expressed in at least 10% of samples were eliminated
| | Sample_platform_id | GPL570
| | Sample_contact_name | William,,Lowry
| | Sample_contact_email | blowry@ucla.edu
| | Sample_contact_laboratory | Lowry
| | Sample_contact_institute | UCLA
| | Sample_contact_address | 621 Charles Young
| | Sample_contact_city | Los Angeles
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 90095
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1096nnn/GSM1096012/suppl/GSM1096012_NHDF3535_p5b_-_Ad_fem.CEL.gz
| | Sample_series_id | GSE45030
| | Sample_data_row_count | 37424
| | |
|
GSM1096013 | GPL570 |
|
NHDF3975 - Ad fem
|
wildtype fibroblasts
|
cell type: FBs
genotype/variation: wildtype fibroblasts
|
|
| Sample_geo_accession | GSM1096013
| | Sample_status | Public on Apr 01 2013
| | Sample_submission_date | Mar 11 2013
| | Sample_last_update_date | Jun 10 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | all grown in standard conditions: hESC/hiPSC (in KO serum replacer, hESC media), FBs (Dmem +10% FBS), NPCs (Dmem, N2, B27, Egf, Fgf)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cells were lysed, and run through Stratagene Total RNA isolation kit
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Labeling was performed with Ambion MESSAGEAMP PREMIER kit (cat#: 4383452)
| | Sample_hyb_protocol | Labeled cRNA was mixed with hybridization mix according to Affymetrix protocol and hybridized in Affymetrix GeneChip hybridization oven 645 at 45C for 16 hours with rotation at 60 rpm
| | Sample_scan_protocol | Scanning was performed on Affymetrix 7G scanner with target intensity 500
| | Sample_data_processing | Cel files were imported into Genespring and RMA normalized. Probesets not expressed in at least 10% of samples were eliminated
| | Sample_platform_id | GPL570
| | Sample_contact_name | William,,Lowry
| | Sample_contact_email | blowry@ucla.edu
| | Sample_contact_laboratory | Lowry
| | Sample_contact_institute | UCLA
| | Sample_contact_address | 621 Charles Young
| | Sample_contact_city | Los Angeles
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 90095
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1096nnn/GSM1096013/suppl/GSM1096013_NHDF3975_-_Ad_fem.CEL.gz
| | Sample_series_id | GSE45030
| | Sample_data_row_count | 37424
| | |
|
GSM1096014 | GPL570 |
|
NHDF17430 - Ad fem
|
wildtype fibroblasts
|
cell type: FBs
genotype/variation: wildtype fibroblasts
|
|
| Sample_geo_accession | GSM1096014
| | Sample_status | Public on Apr 01 2013
| | Sample_submission_date | Mar 11 2013
| | Sample_last_update_date | Jun 10 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | all grown in standard conditions: hESC/hiPSC (in KO serum replacer, hESC media), FBs (Dmem +10% FBS), NPCs (Dmem, N2, B27, Egf, Fgf)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cells were lysed, and run through Stratagene Total RNA isolation kit
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Labeling was performed with Ambion MESSAGEAMP PREMIER kit (cat#: 4383452)
| | Sample_hyb_protocol | Labeled cRNA was mixed with hybridization mix according to Affymetrix protocol and hybridized in Affymetrix GeneChip hybridization oven 645 at 45C for 16 hours with rotation at 60 rpm
| | Sample_scan_protocol | Scanning was performed on Affymetrix 7G scanner with target intensity 500
| | Sample_data_processing | Cel files were imported into Genespring and RMA normalized. Probesets not expressed in at least 10% of samples were eliminated
| | Sample_platform_id | GPL570
| | Sample_contact_name | William,,Lowry
| | Sample_contact_email | blowry@ucla.edu
| | Sample_contact_laboratory | Lowry
| | Sample_contact_institute | UCLA
| | Sample_contact_address | 621 Charles Young
| | Sample_contact_city | Los Angeles
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 90095
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1096nnn/GSM1096014/suppl/GSM1096014_NHDF17430_-_Ad_fem.CEL.gz
| | Sample_series_id | GSE45030
| | Sample_data_row_count | 37424
| | |
|
GSM1096015 | GPL570 |
|
NHDF17914 - Ad fem
|
wildtype fibroblasts
|
cell type: FBs
genotype/variation: wildtype fibroblasts
|
|
| Sample_geo_accession | GSM1096015
| | Sample_status | Public on Apr 01 2013
| | Sample_submission_date | Mar 11 2013
| | Sample_last_update_date | Jun 10 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | all grown in standard conditions: hESC/hiPSC (in KO serum replacer, hESC media), FBs (Dmem +10% FBS), NPCs (Dmem, N2, B27, Egf, Fgf)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cells were lysed, and run through Stratagene Total RNA isolation kit
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Labeling was performed with Ambion MESSAGEAMP PREMIER kit (cat#: 4383452)
| | Sample_hyb_protocol | Labeled cRNA was mixed with hybridization mix according to Affymetrix protocol and hybridized in Affymetrix GeneChip hybridization oven 645 at 45C for 16 hours with rotation at 60 rpm
| | Sample_scan_protocol | Scanning was performed on Affymetrix 7G scanner with target intensity 500
| | Sample_data_processing | Cel files were imported into Genespring and RMA normalized. Probesets not expressed in at least 10% of samples were eliminated
| | Sample_platform_id | GPL570
| | Sample_contact_name | William,,Lowry
| | Sample_contact_email | blowry@ucla.edu
| | Sample_contact_laboratory | Lowry
| | Sample_contact_institute | UCLA
| | Sample_contact_address | 621 Charles Young
| | Sample_contact_city | Los Angeles
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 90095
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1096nnn/GSM1096015/suppl/GSM1096015_NHDF17914_-_Ad_fem.CEL.gz
| | Sample_series_id | GSE45030
| | Sample_data_row_count | 37424
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